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PDB: 1249 results

5WPM
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BU of 5wpm by Molmil
KRas G12V, bound to GppNHp and miniprotein 225-11(A30R)
Descriptor: GTPase KRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Lee, S.-J, Shim, S.Y, McGee, J.H, Verdine, G.L.
Deposit date:2017-08-05
Release date:2018-01-03
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Exceptionally high-affinity Ras binders that remodel its effector domain.
J. Biol. Chem., 293, 2018
5WPL
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KRas G12V, bound to GppNHp and miniprotein 225-11
Descriptor: CALCIUM ION, GTPase HRas, MAGNESIUM ION, ...
Authors:Lee, S.-J, Shim, S.Y, McGee, J.H, Verdine, G.L.
Deposit date:2017-08-05
Release date:2018-01-03
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Exceptionally high-affinity Ras binders that remodel its effector domain.
J. Biol. Chem., 293, 2018
1MNL
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BU of 1mnl by Molmil
HIGH-RESOLUTION SOLUTION STRUCTURE OF A SWEET PROTEIN SINGLE-CHAIN MONELLIN (SCM) DETERMINED BY NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY AND DYNAMICAL SIMULATED ANNEALING CALCULATIONS, 21 STRUCTURES
Descriptor: MONELLIN
Authors:Lee, S.-Y, Lee, J.-H, Chang, H.-J, Jo, J.-M, Jung, J.-W, Lee, W.
Deposit date:1998-08-06
Release date:1999-06-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a sweet protein single-chain monellin determined by nuclear magnetic resonance and dynamical simulated annealing calculations.
Biochemistry, 38, 1999
6M2D
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BU of 6m2d by Molmil
MUL1-RING domain
Descriptor: Mitochondrial ubiquitin ligase activator of NFKB 1, SULFATE ION, ZINC ION
Authors:Lee, S.O, Ryu, K.S, Chi, S.-W.
Deposit date:2020-02-27
Release date:2021-04-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.795 Å)
Cite:MUL1-RING recruits the substrate, p53-TAD as a complex with UBE2D2-UB conjugate.
Febs J., 2022
6M2C
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BU of 6m2c by Molmil
Distinct mechanism of MUL1-RING domain simultaneously recruiting E2 enzyme and the substrate p53-TAD domain
Descriptor: Mitochondrial ubiquitin ligase activator of NFKB 1, Ubiquitin-conjugating enzyme E2 D2, ZINC ION
Authors:Lee, S.O, Ryu, K.S, Chi, S.-W.
Deposit date:2020-02-27
Release date:2021-04-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.702 Å)
Cite:MUL1-RING recruits the substrate, p53-TAD as a complex with UBE2D2-UB conjugate.
Febs J., 2022
5WP5
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BU of 5wp5 by Molmil
Arabidopsis thaliana phosphoethanolamine N-methyltransferase 2 (AtPMT2) in complex with SAH
Descriptor: Phosphomethylethanolamine N-methyltransferase 2, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Lee, S.G, Jez, J.M.
Deposit date:2017-08-03
Release date:2017-11-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Conformational changes in the di-domain structure of Arabidopsis phosphoethanolamine methyltransferase leads to active-site formation.
J. Biol. Chem., 292, 2017
5WP4
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BU of 5wp4 by Molmil
Arabidopsis thaliana phosphoethanolamine N-methyltransferase 1 (AtPMT1, XIOPTL) in complex with SAH and phosphocholine
Descriptor: PHOSPHOCHOLINE, Phosphoethanolamine N-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Lee, S.G, Jez, J.M.
Deposit date:2017-08-03
Release date:2017-11-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.341 Å)
Cite:Conformational changes in the di-domain structure of Arabidopsis phosphoethanolamine methyltransferase leads to active-site formation.
J. Biol. Chem., 292, 2017
6NZ5
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BU of 6nz5 by Molmil
YcjX-GDPCP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, YcjX Stress Protein
Authors:Lee, S, Tsai, J, Tsai, F.T, Sung, N, Lee, J, Chang, C.
Deposit date:2019-02-12
Release date:2019-09-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.233 Å)
Cite:Crystal Structure of the YcjX Stress Protein Reveals a Ras-Like GTP-Binding Protein.
J.Mol.Biol., 431, 2019
1SVP
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BU of 1svp by Molmil
SINDBIS VIRUS CAPSID PROTEIN
Descriptor: SINDBIS VIRUS CAPSID PROTEIN
Authors:Lee, S, Rossmann, M.G.
Deposit date:1996-03-22
Release date:1996-08-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Identification of a protein binding site on the surface of the alphavirus nucleocapsid and its implication in virus assembly.
Structure, 4, 1996
6NZ4
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YcjX-GDP (type I)
Descriptor: GUANOSINE-5'-DIPHOSPHATE, YcjX Stress Protein
Authors:Lee, S, Tsai, J, Tsai, F.T.
Deposit date:2019-02-12
Release date:2019-09-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Crystal Structure of the YcjX Stress Protein Reveals a Ras-Like GTP-Binding Protein.
J.Mol.Biol., 431, 2019
8JZI
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BU of 8jzi by Molmil
Mutant S-adenosylmethionine synthase from C. glutamicum
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, ...
Authors:Lee, S, Kim, K.J.
Deposit date:2023-07-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Structural and Biochemical Studies on Product Inhibition of S-Adenosylmethionine Synthetase from Corynebacterium glutamicum .
J.Agric.Food Chem., 71, 2023
8JZH
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C. glutamicum S-adenosylmethionine synthase
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, S-adenosylmethionine synthase, ...
Authors:Lee, S, Kim, K.J.
Deposit date:2023-07-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Biochemical Studies on Product Inhibition of S-Adenosylmethionine Synthetase from Corynebacterium glutamicum .
J.Agric.Food Chem., 71, 2023
8JZG
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BU of 8jzg by Molmil
C. glutamicum S-adenosylmethionine synthase co-crystallized with Adenosine, triphosphate, and SAM
Descriptor: ADENOSINE, GLYCEROL, MAGNESIUM ION, ...
Authors:Lee, S, Kim, K.J.
Deposit date:2023-07-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Structural and Biochemical Studies on Product Inhibition of S-Adenosylmethionine Synthetase from Corynebacterium glutamicum .
J.Agric.Food Chem., 71, 2023
6N8V
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BU of 6n8v by Molmil
Hsp104DWB open conformation
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Heat shock protein 104
Authors:Lee, S, Rho, S.H, Lee, J, Sung, N, Liu, J, Tsai, F.T.F.
Deposit date:2018-11-30
Release date:2019-01-02
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (9.3 Å)
Cite:Cryo-EM Structures of the Hsp104 Protein Disaggregase Captured in the ATP Conformation.
Cell Rep, 26, 2019
6N8Z
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BU of 6n8z by Molmil
HSP104DWB extended conformation
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Heat shock protein 104
Authors:Lee, S, Rho, S.H, Lee, J, Sung, N, Liu, J, Tsai, F.T.F.
Deposit date:2018-11-30
Release date:2019-01-02
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (9.3 Å)
Cite:Cryo-EM Structures of the Hsp104 Protein Disaggregase Captured in the ATP Conformation.
Cell Rep, 26, 2019
6N8T
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BU of 6n8t by Molmil
Hsp104DWB closed conformation
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Heat shock protein 104
Authors:Lee, S, Rho, S.H, Lee, J, Sung, N, Liu, J, Tsai, F.T.F.
Deposit date:2018-11-30
Release date:2019-01-02
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (7.7 Å)
Cite:Cryo-EM Structures of the Hsp104 Protein Disaggregase Captured in the ATP Conformation.
Cell Rep, 26, 2019
8K3F
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BU of 8k3f by Molmil
Crystal structure of the recombination mediator protein RecR from Campylobacter jejuni
Descriptor: Recombination protein RecR, ZINC ION
Authors:Lee, S.J, Yoon, S.I.
Deposit date:2023-07-15
Release date:2023-11-01
Method:X-RAY DIFFRACTION (2.603 Å)
Cite:Structural and Biochemical Analysis of the Recombination Mediator Protein RecR from Campylobacter jejuni.
Int J Mol Sci, 24, 2023
1WYK
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BU of 1wyk by Molmil
SINDBIS VIRUS CAPSID PROTEIN (114-264)
Descriptor: 1,4-DIETHYLENE DIOXIDE, FORMYL GROUP, SINDBIS VIRUS CAPSID PROTEIN
Authors:Lee, S, Kuhn, R.J, Rossmann, M.G.
Deposit date:1998-01-12
Release date:1998-04-29
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Probing the potential glycoprotein binding site of sindbis virus capsid protein with dioxane and model building.
Proteins, 33, 1998
8FDS
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BU of 8fds by Molmil
Ankyrin domain of SKD3 isoform 2
Descriptor: Caseinolytic peptidase B protein homolog, FORMIC ACID
Authors:Lee, S, Tsai, F.T.F, Chang, C.
Deposit date:2022-12-04
Release date:2023-04-19
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural basis of impaired disaggregase function in the oxidation-sensitive SKD3 mutant causing 3-methylglutaconic aciduria.
Nat Commun, 14, 2023
4JX7
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BU of 4jx7 by Molmil
Crystal structure of Pim1 kinase in complex with inhibitor 2-[(trans-4-aminocyclohexyl)amino]-4-{[3-(trifluoromethyl)phenyl]amino}pyrido[4,3-d]pyrimidin-5(6H)-one
Descriptor: 2-[(trans-4-aminocyclohexyl)amino]-4-{[3-(trifluoromethyl)phenyl]amino}pyrido[4,3-d]pyrimidin-5(6H)-one, PIM1 consensus peptide, Serine/threonine-protein kinase pim-1
Authors:Lee, S.J, Han, B.G, Cho, J.W, Choi, J.S, Lee, J.K, Song, H.J, Koh, J.S, Lee, B.I.
Deposit date:2013-03-27
Release date:2013-08-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of pim1 kinase in complex with a pyrido[4,3-d]pyrimidine derivative suggests a unique binding mode.
Plos One, 8, 2013
4JX3
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BU of 4jx3 by Molmil
Crystal structure of Pim1 kinase
Descriptor: Serine/threonine-protein kinase pim-1
Authors:Lee, S.J, Han, B.G, Cho, J.W, Choi, J.S, Lee, J.K, Song, H.J, Koh, J.S, Lee, B.I.
Deposit date:2013-03-27
Release date:2013-08-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of pim1 kinase in complex with a pyrido[4,3-d]pyrimidine derivative suggests a unique binding mode.
Plos One, 8, 2013
6PGQ
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BU of 6pgq by Molmil
Crystal structure of N-glycosylated human calcitonin receptor extracellular domain in complex with salmon calcitonin (22-32)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, Calcitonin, ...
Authors:Lee, S, Pioszak, A.A.
Deposit date:2019-06-24
Release date:2020-02-12
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Calcitonin Receptor N-Glycosylation Enhances Peptide Hormone Affinity by Controlling Receptor Dynamics.
J.Mol.Biol., 432, 2020
7YMO
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BU of 7ymo by Molmil
Crystal structure of the recombination mediator protein RecO from Campylobacter jejuni
Descriptor: Recombination protein RecO, ZINC ION
Authors:Lee, S, Oh, H.B, Yoon, S.I.
Deposit date:2022-07-29
Release date:2022-08-31
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the Recombination Mediator Protein RecO from Campylobacter jejuni and Its Interaction with DNA and a Zinc Ion.
Int J Mol Sci, 23, 2022
5HS9
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Crystal structure of the quinone-bound YodB from B. subtilis
Descriptor: HTH-type transcriptional regulator YodB
Authors:Lee, S.J, Lee, I.G, Lee, B.J.
Deposit date:2016-01-25
Release date:2016-08-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Two distinct mechanisms of transcriptional regulation by the redox sensor YodB
Proc.Natl.Acad.Sci.USA, 113, 2016
5HS7
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Reduced form of the transcriptional regulator YodB from B. subtilis
Descriptor: GLYCEROL, HTH-type transcriptional regulator YodB
Authors:Lee, S.J, Lee, I.G, Lee, B.J.
Deposit date:2016-01-25
Release date:2016-08-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Two distinct mechanisms of transcriptional regulation by the redox sensor YodB
Proc.Natl.Acad.Sci.USA, 113, 2016

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