Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 784 results

5GLF
DownloadVisualize
BU of 5glf by Molmil
Structural insights into the interaction of p97 N-terminal domain and SHP motif in Derlin-1 rhomboid pseudoprotease
Descriptor: Derlin-1, Transitional endoplasmic reticulum ATPase
Authors:Lim, J.J, Lee, Y, Yoon, S.Y, Ly, T.T, Kang, J.Y, Youn, H.-S, An, J.Y, Lee, J.-G, Park, K.R, Kim, T.G, Yang, J.K, Jun, Y, Eom, S.H.
Deposit date:2016-07-11
Release date:2016-11-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural insights into the interaction of human p97 N-terminal domain and SHP motif in Derlin-1 rhomboid pseudoprotease.
FEBS Lett., 590, 2016
8ILJ
DownloadVisualize
BU of 8ilj by Molmil
S-formylglutathione hydrolase (BuSFGH) from Burkholderiaceae sp.
Descriptor: S-formylglutathione hydrolase
Authors:Hwang, J, Lee, J.H, Do, H.
Deposit date:2023-03-03
Release date:2024-01-10
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal structure and functional characterization of an S-formylglutathione hydrolase (BuSFGH) from Burkholderiaceae sp.
Crystals, 13, 2023
5TSP
DownloadVisualize
BU of 5tsp by Molmil
Crystal structure of the catalytic domain of Clostridium perfringens neuraminidase (NanI) in complex with a CHES
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CALCIUM ION, Sialidase
Authors:Lee, Y, Youn, H.-S, Lee, J.-G, An, J.Y, Park, K.R, Kang, J.Y, Jin, M.S, Ryu, Y.B, Park, K.H, Eom, S.H.
Deposit date:2016-10-31
Release date:2017-03-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Crystal structure of the catalytic domain of Clostridium perfringens neuraminidase in complex with a non-carbohydrate-based inhibitor, 2-(cyclohexylamino)ethanesulfonic acid
Biochem. Biophys. Res. Commun., 486, 2017
3A7C
DownloadVisualize
BU of 3a7c by Molmil
Crystal structure of TLR2-PE-DTPA complex
Descriptor: (10S,13R)-3-{2-[{2-[bis(carboxymethyl)amino]ethyl}(carboxymethyl)amino]ethyl}-10-hydroxy-5,16-dioxo-13-(tetradecanoyloxy)-9,11,15-trioxa-3,6-diaza-10-phosphanonacosan-1-oic acid 10-oxide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kang, J.Y, Jin, M.S, Lee, J.-O.
Deposit date:2009-09-20
Release date:2009-11-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Recognition of lipopeptide patterns by Toll-like receptor 2-Toll-like receptor 6 heterodimer
Immunity, 31, 2009
7CS1
DownloadVisualize
BU of 7cs1 by Molmil
Aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis-Complex with Coenzyme A and Neomycin
Descriptor: Aminoglycoside 2'-N-acetyltransferase, COENZYME A, NEOMYCIN
Authors:Jeong, C.S, Hwang, J, Do, H, Lee, J.H.
Deposit date:2020-08-14
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.966 Å)
Cite:Structural and biochemical analyses of an aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis.
Sci Rep, 10, 2020
7CSI
DownloadVisualize
BU of 7csi by Molmil
Aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis-Complex with Coenzyme A and Sisomicin
Descriptor: (1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside, Aminoglycoside 2'-N-acetyltransferase, COENZYME A
Authors:Jeong, C.S, Hwang, J, Do, H, Lee, J.H.
Deposit date:2020-08-14
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural and biochemical analyses of an aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis.
Sci Rep, 10, 2020
7CSJ
DownloadVisualize
BU of 7csj by Molmil
Aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis-Complex with Coenzyme A and Gentamicin
Descriptor: Aminoglycoside 2'-N-acetyltransferase, COENZYME A, gentamicin C1
Authors:Jeong, C.S, Hwang, J, Do, H, Lee, J.H.
Deposit date:2020-08-14
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.168 Å)
Cite:Structural and biochemical analyses of an aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis.
Sci Rep, 10, 2020
3A7B
DownloadVisualize
BU of 3a7b by Molmil
Crystal structure of TLR2-Streptococcus Pneumoniae lipoteichoic acid complex
Descriptor: (2S)-1-({3-O-[2-(acetylamino)-4-amino-2,4,6-trideoxy-beta-D-galactopyranosyl]-alpha-D-glucopyranosyl}oxy)-3-(heptanoyloxy)propan-2-yl (7Z)-pentadec-7-enoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kang, J.Y, Jin, M.S, Lee, J.-O.
Deposit date:2009-09-20
Release date:2009-11-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Recognition of lipopeptide patterns by Toll-like receptor 2-Toll-like receptor 6 heterodimer
Immunity, 31, 2009
5X3F
DownloadVisualize
BU of 5x3f by Molmil
Crystal structure of the YgjG-Protein A-Zpa963-PKA catalytic domain
Descriptor: Putrescine aminotransferase,Immunoglobulin G-binding protein A, Zpa963,cAMP-dependent protein kinase catalytic subunit alpha
Authors:Youn, S.J, Kwon, N.Y, Lee, J.H, Kim, J.H, Lee, H, Lee, J.O.
Deposit date:2017-02-05
Release date:2017-06-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.38 Å)
Cite:Construction of novel repeat proteins with rigid and predictable structures using a shared helix method.
Sci Rep, 7, 2017
1Q1Y
DownloadVisualize
BU of 1q1y by Molmil
Crystal Structures of Peptide Deformylase from Staphylococcus aureus Complexed with Actinonin
Descriptor: ACTINONIN, Peptide deformylase, ZINC ION
Authors:Yoon, H.J, Lee, S.K, Kim, H.L, Kim, H.W, Kim, H.W, Lee, J.Y, Mikami, B, Suh, S.W.
Deposit date:2003-07-23
Release date:2004-07-23
Last modified:2017-02-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of peptide deformylase from Staphylococcus aureus in complex with actinonin, a naturally occurring antibacterial agent
Proteins, 57, 2004
8GJE
DownloadVisualize
BU of 8gje by Molmil
HIV-1 Env subtype C CZA97.12 SOSIP.664 in complex with 3BNC117 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3BNC117 Fab heavy chain, ...
Authors:Ozorowski, G, Lee, J.H, Ward, A.B.
Deposit date:2023-03-15
Release date:2023-10-18
Last modified:2023-11-22
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Glycan heterogeneity as a cause of the persistent fraction in HIV-1 neutralization.
Plos Pathog., 19, 2023
5XBY
DownloadVisualize
BU of 5xby by Molmil
Crystal structure of the PKA-Protein A fusion protein (end-to-end fusion)
Descriptor: cAMP-dependent protein kinase type II-alpha regulatory subunit,Immunoglobulin G-binding protein A
Authors:Youn, S.J, Kwon, N.Y, Lee, J.H, Kim, J.H, Lee, H, Lee, J.O.
Deposit date:2017-03-21
Release date:2017-07-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Construction of novel repeat proteins with rigid and predictable structures using a shared helix method.
Sci Rep, 7, 2017
6WKO
DownloadVisualize
BU of 6wko by Molmil
Structure of an influenza C virus hemagglutinin-esterase-fusion (HEF2) intermediate
Descriptor: CHLORIDE ION, Hemagglutinin-esterase-fusion glycoprotein
Authors:Serrao, V.H.B, Lee, J.E.
Deposit date:2020-04-16
Release date:2021-05-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Snapshot of an influenza virus glycoprotein fusion intermediate.
Cell Rep, 35, 2021
6V05
DownloadVisualize
BU of 6v05 by Molmil
Cryo-EM structure of a substrate-engaged Bam complex
Descriptor: Outer membrane protein assembly factor BamA, Outer membrane protein assembly factor BamA,Outer membrane protein assembly factor BamA,Outer membrane protein assembly factor BamA,Outer membrane protein assembly factor BamA, Outer membrane protein assembly factor BamB, ...
Authors:Tomasek, D, Rawson, S, Lee, J, Wzorek, J.S, Harrison, S.C, Li, Z, Kahne, D.
Deposit date:2019-11-18
Release date:2020-06-10
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structure of a nascent membrane protein as it folds on the BAM complex.
Nature, 583, 2020
1I7F
DownloadVisualize
BU of 1i7f by Molmil
CRYSTAL STRUCTURE OF THE HSP33 DOMAIN WITH CONSTITUTIVE CHAPERONE ACTIVITY
Descriptor: GLYCEROL, HEAT SHOCK PROTEIN 33, SULFATE ION
Authors:Kim, S.-J, Jeong, D.-G, Chi, S.-W, Lee, J.-S, Ryu, S.-E.
Deposit date:2001-03-09
Release date:2001-05-09
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of proteolytic fragments of the redox-sensitive Hsp33 with constitutive chaperone activity
Nat.Struct.Biol., 8, 2001
6KZ7
DownloadVisualize
BU of 6kz7 by Molmil
The crystal structure of BAF155 SWIRM domain and N-terminal elongated hSNF5 RPT1 domain complex: Chromatin remodeling complex
Descriptor: SWI/SNF complex subunit SMARCC1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Authors:Lee, W, Han, J, Kim, I, Park, J.H, Joo, K, Lee, J, Suh, J.Y.
Deposit date:2019-09-23
Release date:2020-07-08
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:A Coil-to-Helix Transition Serves as a Binding Motif for hSNF5 and BAF155 Interaction.
Int J Mol Sci, 21, 2020
7VWO
DownloadVisualize
BU of 7vwo by Molmil
TA complex from Mycobacterium tuberculosis
Descriptor: Antitoxin VapB43, Ribonuclease VapC43
Authors:Eun, H.-J, Lee, B.-J, Lee, J.-Y.
Deposit date:2021-11-11
Release date:2022-11-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:TA complex from Mycobacterium tuberculosis
To Be Published
6DVR
DownloadVisualize
BU of 6dvr by Molmil
Crystal structure of human CARM1 with (R)-SKI-72
Descriptor: (2R,5S)-2-amino-6-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]-5-[(benzylamino)methyl]-N-[2-(4-methoxyphenyl)ethyl]hexanamide (non-preferred name), 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL, Histone-arginine methyltransferase CARM1, ...
Authors:Dong, A, Zeng, H, Hutchinson, A, Seitova, A, Luo, M, Cai, X.C, Ke, W, Wang, J, Shi, C, Zheng, W, Lee, J.P, Ibanez, G, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Brown, P.J, Structural Genomics Consortium (SGC)
Deposit date:2018-06-25
Release date:2018-07-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Crystal structure of human CARM1 with (R)-SKI-72
to be published
7TA2
DownloadVisualize
BU of 7ta2 by Molmil
Crystal structure of the human sperm-expressed surface protein SPACA6
Descriptor: BROMIDE ION, Sperm acrosome membrane-associated protein 6
Authors:Vance, T.D.R, Yip, P, Jimenez, E, Uson, I, Lee, J.E.
Deposit date:2021-12-20
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:SPACA6 ectodomain structure reveals a conserved superfamily of gamete fusion-associated proteins.
Commun Biol, 5, 2022
5CBN
DownloadVisualize
BU of 5cbn by Molmil
Fusion protein of mbp3-16 and B4 domain of protein A from staphylococcal aureus with chemical cross-linker EY-CBS
Descriptor: 2,2'-ethyne-1,2-diylbis{5-[(chloroacetyl)amino]benzenesulfonic acid}, Maltose-binding periplasmic protein, mbp3-16,Immunoglobulin G-binding protein A
Authors:Jeong, W.H, Lee, H, Song, D.H, Lee, J.O.
Deposit date:2015-07-01
Release date:2016-03-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Connecting two proteins using a fusion alpha helix stabilized by a chemical cross linker.
Nat Commun, 7, 2016
6JKW
DownloadVisualize
BU of 6jkw by Molmil
Seleno-methionine PNGM-1 from deep-sea sediment metagenome
Descriptor: Metallo-beta-lactamases PNGM-1, ZINC ION
Authors:Hong, M.K, Park, K.S, Jeon, J.H, Lee, J.H, Park, Y.S, Lee, S.H, Kang, L.W.
Deposit date:2019-03-02
Release date:2019-04-17
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:PNGM 1 a novel subclass B3 metallo beta lactamase from a deep sea sediment metagenome
Journal of Global Antimicrobial Resistance, 14, 2018
5COC
DownloadVisualize
BU of 5coc by Molmil
Fusion protein of human calmodulin and B4 domain of protein A from staphylococcal aureus
Descriptor: CALCIUM ION, Immunoglobulin G-binding protein A,Calmodulin
Authors:Jeong, W.H, Lee, H, Song, D.H, Lee, J.O.
Deposit date:2015-07-20
Release date:2016-03-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6691 Å)
Cite:Connecting two proteins using a fusion alpha helix stabilized by a chemical cross linker.
Nat Commun, 7, 2016
5IT1
DownloadVisualize
BU of 5it1 by Molmil
Streptomyces peucetius CYP105P2 complex with biphenyl compound
Descriptor: 4,4'-PROPANE-2,2-DIYLDIPHENOL, PROTOPORPHYRIN IX CONTAINING FE, Putative cytochrome P450
Authors:Lee, C.W, Lee, J.H.
Deposit date:2016-03-16
Release date:2016-06-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Cytochrome P450 (CYP105P2) from Streptomyces peucetius and Its Conformational Changes in Response to Substrate Binding
Int J Mol Sci, 17, 2016
8ORD
DownloadVisualize
BU of 8ord by Molmil
Cryo-EM map of zebrafish cardiac F-actin
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha 1b, ...
Authors:Bradshaw, M, Squire, J.M, Morris, E, Atkinson, G, Richardson, B, Lees, J, Paul, D.M.
Deposit date:2023-04-13
Release date:2023-08-02
Last modified:2023-10-11
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Zebrafish as a model for cardiac disease; Cryo-EM structure of native cardiac thin filaments from Danio Rerio.
J.Muscle Res.Cell.Motil., 44, 2023
4MHQ
DownloadVisualize
BU of 4mhq by Molmil
Crystal structure of human primase catalytic subunit
Descriptor: CITRIC ACID, DNA primase small subunit, ZINC ION
Authors:Park, K.R, An, J.Y, Lee, Y, Youn, H.S, Lee, J.G, Kang, J.Y, Kim, T.G, Lim, J.J, Eom, S.H, Wang, J.
Deposit date:2013-08-30
Release date:2014-09-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of human primase catalytic subunit
To be Published

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon