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PDB: 120 results

4ZBM
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BU of 4zbm by Molmil
Crystal structure of Drosophila cyclic nucleotide gated channel pore mimicking NaK mutant
Descriptor: BARIUM ION, POTASSIUM ION, Potassium channel protein
Authors:Lam, Y, Zeng, W, Derebe, M.G, Jiang, Y.
Deposit date:2015-04-14
Release date:2015-07-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural implications of weak Ca2+ block in Drosophila cyclic nucleotide-gated channels.
J.Gen.Physiol., 146, 2015
4PDV
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BU of 4pdv by Molmil
Structure of K+ selective NaK mutant in barium and potassium
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, BARIUM ION, POTASSIUM ION, ...
Authors:Lam, Y, Zeng, W, Sauer, D.B, Jiang, Y.
Deposit date:2014-04-22
Release date:2014-07-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.821 Å)
Cite:High Resolution Structural Views of Rubidium, Cesium and Barium Binding within a Potassium Selective Channel Filter
To Be Published
4PDR
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BU of 4pdr by Molmil
Crystal Structure of a K+ selective NaK mutant in Barium and Sodium
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, BARIUM ION, Potassium channel protein, ...
Authors:Lam, Y, Zeng, W, Sauer, D.B, Jiang, Y.
Deposit date:2014-04-21
Release date:2014-07-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:High Resolution Structural Views of Rubidium, Cesium and Barium Binding within a Potassium Selective Channel Filter
To Be Published
4PDL
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BU of 4pdl by Molmil
Structure of K+ selective NaK mutant in caesium
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CESIUM ION, HEXANE, ...
Authors:Lam, Y, Zeng, W, Sauer, D.B, Jiang, Y.
Deposit date:2014-04-19
Release date:2014-07-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:High Resolution Structural Views of Rubidium, Cesium and Barium Binding within a Potassium Selective Channel Filter
To Be Published
4PDM
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BU of 4pdm by Molmil
Crystal Structure of K+ selective NaK mutant in rubidium
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Potassium channel protein, RUBIDIUM ION
Authors:Lam, Y.
Deposit date:2014-04-19
Release date:2014-07-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:High Resolution Structural Views of Rubidium, Cesium and Barium Binding within a Potassium Selective Channel Filter
To Be Published
1QQT
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BU of 1qqt by Molmil
METHIONYL-TRNA SYNTHETASE FROM ESCHERICHIA COLI
Descriptor: METHIONYL-TRNA SYNTHETASE, ZINC ION
Authors:Mechulam, Y, Schmitt, E, Maveyraud, L, Zelwer, C, Nureki, O, Yokoyama, S, Konno, M, Blanquet, S.
Deposit date:1999-06-08
Release date:2000-01-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal structure of Escherichia coli methionyl-tRNA synthetase highlights species-specific features.
J.Mol.Biol., 294, 1999
3V11
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BU of 3v11 by Molmil
Structure of the ternary initiation complex AIF2:GDPNP:methionylated initiator TRNA
Descriptor: Initiator tRNA, MAGNESIUM ION, METHIONINE, ...
Authors:Mechulam, Y, Schmitt, E.
Deposit date:2011-12-09
Release date:2012-03-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (5 Å)
Cite:Structure of the ternary initiation complex aIF2-GDPNP-methionylated initiator tRNA.
Nat.Struct.Mol.Biol., 19, 2012
2QN6
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BU of 2qn6 by Molmil
Structure of an archaeal heterotrimeric initiation factor 2 reveals a nucleotide state between the GTP and the GDP states
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Translation initiation factor 2 alpha subunit, ...
Authors:Mechulam, Y, Yatime, L, Blanquet, S, Schmitt, E.
Deposit date:2007-07-18
Release date:2007-11-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure of an archaeal heterotrimeric initiation factor 2 reveals a nucleotide state between the GTP and the GDP states.
Proc.Natl.Acad.Sci.Usa, 104, 2007
4GX2
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BU of 4gx2 by Molmil
GsuK channel bound to NAD
Descriptor: CALCIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PHOSPHATE ION, ...
Authors:Kong, C, Zeng, W, Ye, S, Chen, L, Sauer, D.B, Lam, Y, Derebe, M.G, Jiang, Y.
Deposit date:2012-09-03
Release date:2012-12-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Distinct gating mechanisms revealed by the structures of a multi-ligand gated K(+) channel.
elife, 1, 2012
4GX1
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BU of 4gx1 by Molmil
Crystal structure of the GsuK bound to ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, PHOSPHATE ION, ...
Authors:Kong, C, Zeng, W, Ye, S, Chen, L, Sauer, D.B, Lam, Y, Derebe, M.G, Jiang, Y.
Deposit date:2012-09-03
Release date:2012-12-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Distinct gating mechanisms revealed by the structures of a multi-ligand gated K(+) channel.
elife, 1, 2012
4GX0
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BU of 4gx0 by Molmil
Crystal structure of the GsuK L97D mutant
Descriptor: CALCIUM ION, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Kong, C, Zeng, W, Ye, S, Chen, L, Sauer, D.B, Lam, Y, Derebe, M.G, Jiang, Y.
Deposit date:2012-09-03
Release date:2012-12-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Distinct gating mechanisms revealed by the structures of a multi-ligand gated K(+) channel.
elife, 1, 2012
4GX5
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BU of 4gx5 by Molmil
GsuK Channel
Descriptor: CALCIUM ION, POTASSIUM ION, TrkA domain protein, ...
Authors:Kong, C, Zeng, W, Ye, S, Chen, L, Sauer, D.B, Lam, Y, Derebe, M.G, Jiang, Y.
Deposit date:2012-09-03
Release date:2012-12-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Distinct gating mechanisms revealed by the structures of a multi-ligand gated K(+) channel.
elife, 1, 2012
4GVL
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BU of 4gvl by Molmil
Crystal Structure of the GsuK RCK domain
Descriptor: ADENOSINE MONOPHOSPHATE, CALCIUM ION, TrkA domain protein, ...
Authors:Kong, C, Zeng, W, Ye, S, Chen, L, Sauer, D.B, Lam, Y, Derebe, M.G, Jiang, Y.
Deposit date:2012-08-30
Release date:2012-12-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Distinct gating mechanisms revealed by the structures of a multi-ligand gated K(+) channel.
elife, 1, 2012
2VH7
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BU of 2vh7 by Molmil
Crystal structure of human common-type acylphosphatase
Descriptor: ACYLPHOSPHATASE-1
Authors:Yeung, R.C.Y, Lam, Y, Wong, K.B.
Deposit date:2007-11-19
Release date:2009-03-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A Rigidifying Salt-Bridge Favors the Activity of Thermophilic Enzyme at High Temperatures at the Expense of Low-Temperature Activity.
Plos Biol., 9, 2011
1KK0
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BU of 1kk0 by Molmil
Structure of the large gamma subunit of initiation factor eIF2 from Pyrococcus abyssi
Descriptor: ZINC ION, eIF2gamma
Authors:Schmitt, E, Blanquet, S, Mechulam, Y.
Deposit date:2001-12-06
Release date:2002-04-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The large subunit of initiation factor aIF2 is a close structural homologue of elongation factors.
EMBO J., 21, 2002
1KK3
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BU of 1kk3 by Molmil
Structure of the wild-type large gamma subunit of initiation factor eIF2 from Pyrococcus abyssi complexed with GDP-Mg2+
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ZINC ION, ...
Authors:Schmitt, E, Blanquet, S, Mechulam, Y.
Deposit date:2001-12-06
Release date:2002-04-10
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The large subunit of initiation factor aIF2 is a close structural homologue of elongation factors.
EMBO J., 21, 2002
5OCD
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BU of 5ocd by Molmil
structure of a CDPS from Fluoribacter dumoffii
Descriptor: Cyclodipeptide synthase
Authors:Schmitt, E, Mechulam, Y, Bourgeois, G.
Deposit date:2017-06-30
Release date:2018-08-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:Structural basis for partition of the cyclodipeptide synthases into two subfamilies.
J. Struct. Biol., 203, 2018
5MLQ
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BU of 5mlq by Molmil
Structure of CDPS from Nocardia brasiliensis
Descriptor: CDPS, CITRIC ACID
Authors:Bourgeois, G, Seguin, J, Moutiez, M, Babin, M, Belin, P, Mechulam, Y, Gondry, M, Schmitt, E.
Deposit date:2016-12-07
Release date:2018-05-02
Last modified:2019-05-15
Method:X-RAY DIFFRACTION (3.18 Å)
Cite:Structural basis for partition of the cyclodipeptide synthases into two subfamilies.
J.Struct.Biol., 203, 2018
5MLP
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BU of 5mlp by Molmil
Structure of CDPS from Rickettsiella grylli
Descriptor: Uncharacterized protein
Authors:Bourgeois, G, Seguin, J, Moutiez, M, Babin, M, Belin, P, Mechulam, Y, Gondry, M, Schmitt, E.
Deposit date:2016-12-07
Release date:2018-05-02
Last modified:2019-05-15
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural basis for partition of the cyclodipeptide synthases into two subfamilies.
J.Struct.Biol., 203, 2018
6Q6R
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BU of 6q6r by Molmil
Recognition of different base tetrads by RHAU: X-ray crystal structure of G4 recognition motif bound to the 3-end tetrad of a DNA G-quadruplex
Descriptor: ATP-dependent DNA/RNA helicase DHX36, POTASSIUM ION, Parallel stranded DNA G-quadruplex
Authors:Heddi, B, Cheong, V.V, Schmitt, E, Mechulam, Y, Phan, A.T.
Deposit date:2018-12-11
Release date:2019-10-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Recognition of different base tetrads by RHAU (DHX36): X-ray crystal structure of the G4 recognition motif bound to the 3'-end tetrad of a DNA G-quadruplex.
J.Struct.Biol., 209, 2020
6QJO
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BU of 6qjo by Molmil
DNA containing both right- and left-handed parallel-stranded G-quadruplexes
Descriptor: DNA (28-MER), POTASSIUM ION
Authors:Winnerdy, F.R, Bakalar, B, Maity, A, Vandana, J.J, Schmitt, E, Mechulam, Y, Phan, A.T.
Deposit date:2019-01-24
Release date:2019-07-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:NMR solution and X-ray crystal structures of a DNA molecule containing both right- and left-handed parallel-stranded G-quadruplexes.
Nucleic Acids Res., 47, 2019
6Y4B
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BU of 6y4b by Molmil
Structure of cyclodipeptide synthase from Candidatus Glomeribacter gigasporarum bound to Phe-tRNAPhe
Descriptor: Cyclodipeptide synthase, PHENYLALANINE, RNA (77-MER)
Authors:Bourgeois, G, Mechulam, Y, Schmitt, E.
Deposit date:2020-02-20
Release date:2020-12-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (5 Å)
Cite:Structural basis of the interaction between cyclodipeptide synthases and aminoacylated tRNA substrates.
Rna, 26, 2020
6Y3G
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BU of 6y3g by Molmil
Crystal structure of phenylalanine tRNA from Escherichia coli
Descriptor: CALCIUM ION, GLYCEROL, GUANIDINE, ...
Authors:Bourgeois, G, Mechulam, Y, Schmitt, E.
Deposit date:2020-02-18
Release date:2020-12-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis of the interaction between cyclodipeptide synthases and aminoacylated tRNA substrates.
Rna, 26, 2020
6SPP
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BU of 6spp by Molmil
Structure of the Escherichia coli methionyl-tRNA synthetase variant VI298
Descriptor: CITRIC ACID, GLYCEROL, Methionine--tRNA ligase, ...
Authors:Nigro, G, Schmitt, E, Mechulam, Y.
Deposit date:2019-09-02
Release date:2020-01-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Use of beta3-methionine as an amino acid substrate of Escherichia coli methionyl-tRNA synthetase.
J.Struct.Biol., 209, 2020
6SWD
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BU of 6swd by Molmil
IC2 body model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
Descriptor: 16S ribosomal RNA, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
Authors:Coureux, P.-D, Mechulam, Y, Schmitt, E.
Deposit date:2019-09-20
Release date:2020-02-19
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM study of an archaeal 30S initiation complex gives insights into evolution of translation initiation.
Commun Biol, 3, 2020

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