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PDB: 87 results

2DSU
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Binding of chitin-like polysaccharide to protective signalling factor: Crystal structure of the complex formed between signalling protein from sheep (SPS-40) with a tetrasaccharide at 2.2 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, Chitinase-3-like protein 1, alpha-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Srivastava, D.B, Ethayathulla, A.S, Kumar, J, Singh, N, Sharma, S, Kaur, P, Bhushan, A, Singh, T.P.
Deposit date:2006-07-07
Release date:2006-07-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Carbohydrate binding properties and carbohydrate induced conformational switch in sheep secretory glycoprotein (SPS-40): crystal structures of four complexes of SPS-40 with chitin-like oligosaccharides
J.Struct.Biol., 158, 2007
2G41
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Crystal structure of the complex of sheep signalling glycoprotein with chitin trimer at 3.0A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SIGNAL PROCESSING PROTEIN, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Srivastava, D.B, Ethayathulla, A.S, Kumar, J, Bhushan, A, Sharma, S, Singh, T.P.
Deposit date:2006-02-21
Release date:2006-04-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:Carbohydrate binding properties and carbohydrate induced conformational switch in sheep secretory glycoprotein (SPS-40): crystal structures of four complexes of SPS-40 with chitin-like oligosaccharides
J.Struct.Biol., 158, 2007
2DPE
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Crystal structure of a secretory 40KDA glycoprotein from sheep at 2.0A resolution
Descriptor: Chitinase-3-like protein 1, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Srivastava, D.B, Ethayathulla, A.S, Kumar, J, Singh, N, Sharma, S, Das, U, Srinivasan, A, Singh, T.P.
Deposit date:2006-05-11
Release date:2006-05-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of a secretory signalling glycoprotein from sheep at 2.0A resolution
J.Struct.Biol., 156, 2006
2DSW
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Binding of chitin-like polysaccharides to protective signalling factor: crystal structure of the complex of signalling protein from sheep (SPS-40) with a pentasaccharide at 2.8 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase-3-like protein 1, alpha-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Srivastava, D.B, Ethayathulla, A.S, Kumar, J, Singh, N, Sharma, S, Kaur, P, Bhushan, A, Singh, T.P.
Deposit date:2006-07-07
Release date:2006-08-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Carbohydrate binding properties and carbohydrate induced conformational switch in sheep secretory glycoprotein (SPS-40): crystal structures of four complexes of SPS-40 with chitin-like oligosaccharides
J.Struct.Biol., 158, 2007
8JZA
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Crystal structure of single domain antibody kt75 of human Thyroglobulin
Descriptor: ACETATE ION, POTASSIUM ION, single domain antibody kt75 of human Thyroglobulin
Authors:Mistry, H, Kumarasamy, J, Kumari, S, Kulkarni, S.P, Gupta, G.D.
Deposit date:2023-07-04
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal structure of single domain antibody kt75 of human Thyroglobulin
To Be Published
8UN9
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Crystal structure of the MrfB exonuclease catalytic core
Descriptor: Exonuclease MrfB, MAGNESIUM ION
Authors:Manthei, K.A, Nandakumar, J, Simmons, L.A.
Deposit date:2023-10-18
Release date:2024-05-01
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (2.103 Å)
Cite:Structural and biochemical characterization of the mitomycin C repair exonuclease MrfB.
Nucleic Acids Res., 52, 2024
2Q2T
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Structure of Chlorella virus DNA ligase-adenylate bound to a 5' phosphorylated nick
Descriptor: 5'-D(*AP*TP*TP*GP*CP*GP*AP*CP*(OMC)P*C)-3', 5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3', 5'-D(P*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3', ...
Authors:Lima, C.D, Nandakumar, J, Nair, P.A, Smith, P, Shuman, S.
Deposit date:2007-05-29
Release date:2007-07-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for nick recognition by a minimal pluripotent DNA ligase.
Nat.Struct.Mol.Biol., 14, 2007
2OWO
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Last Stop on the Road to Repair: Structure of E.coli DNA Ligase Bound to Nicked DNA-Adenylate
Descriptor: 26-MER, 5'-D(*AP*CP*AP*AP*TP*TP*GP*CP*GP*AP*CP*(OMC)P*C)-3', 5'-D(*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*AP*TP*G)-3', ...
Authors:Shuman, S, Nandakumar, J, Nair, P.A.
Deposit date:2007-02-16
Release date:2007-05-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Last Stop on the Road to Repair: Structure of E. coli DNA Ligase Bound to Nicked DNA-Adenylate.
Mol.Cell, 26, 2007
2Q2U
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BU of 2q2u by Molmil
Structure of Chlorella virus DNA ligase-product DNA complex
Descriptor: 5'-D(*AP*TP*TP*GP*CP*GP*AP*CP*(OMC)P*CP*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3', 5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3', Chlorella virus DNA ligase
Authors:Lima, C.D, Nandakumar, J, Nair, P.A, Smith, P, Shuman, S.
Deposit date:2007-05-29
Release date:2007-07-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for nick recognition by a minimal pluripotent DNA ligase.
Nat.Struct.Mol.Biol., 14, 2007
2FAO
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Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain
Descriptor: SULFATE ION, probable ATP-dependent DNA ligase
Authors:Zhu, H, Nandakumar, J, Aniukwu, J, Wang, L.K, Glickman, M.S, Lima, C.D, Shuman, S.
Deposit date:2005-12-07
Release date:2006-05-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
Proc.Natl.Acad.Sci.USA, 103, 2006
2FAR
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Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain with dATP and Manganese
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, MANGANESE (II) ION, SULFATE ION, ...
Authors:Zhu, H, Nandakumar, J, Aniukwu, J, Wang, L.K, Glickman, M.S, Lima, C.D, Shuman, S.
Deposit date:2005-12-07
Release date:2006-05-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
Proc.Natl.Acad.Sci.USA, 103, 2006
2FAQ
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Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain with ATP and Manganese
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, SULFATE ION, ...
Authors:Zhu, H, Nandakumar, J, Aniukwu, J, Wang, L.K, Glickman, M.S, Lima, C.D, Shuman, S.
Deposit date:2005-12-07
Release date:2006-05-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
Proc.Natl.Acad.Sci.USA, 103, 2006
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