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PDB: 20 件

2LO6
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Structure of Nrd1 CID bound to phosphorylated RNAP II CTD
分子名称: DNA-directed RNA polymerase II subunit RPB1, Protein NRD1
著者Kubicek, K, Cerna, H, Pasulka, J, Holub, P, Hrossova, D, Loehr, F, Hofr, C, Vanacova, S, Stefl, R.
登録日2012-01-17
公開日2012-12-26
実験手法SOLUTION NMR
主引用文献Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1.
Genes Dev., 26, 2012
6R14
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BU of 6r14 by Molmil
Structure of kiteplatinated dsDNA
分子名称: Kiteplatin, Kiteplatinated DNA oligomer, chain A, ...
著者Margiotta, N, Papadia, P, Kubicek, K, Krejcikova, M, Gkionis, K, Sponer, J.
登録日2019-03-13
公開日2020-04-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural characterization of kiteplatinated DNA
To Be Published
6GC3
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BU of 6gc3 by Molmil
Structure of Nrd1 CID - Sen1 NIM complex
分子名称: Helicase SEN1, Protein NRD1
著者Jasnovidova, O, Kubicek, K, Stefl, R.
登録日2018-04-17
公開日2020-02-05
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structure of Nrd1 CID - Sen1 NIM complex
To Be Published
1X9L
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BU of 1x9l by Molmil
Solution structure of CuI-DR1885 from Deinococcus Radiodurans
分子名称: COPPER (I) ION, CuI-DR1885
著者Banci, L, Bertini, I, Ciofi-Baffoni, S, Katsari, E, Katsaros, N, Kubicek, K, Structural Proteomics in Europe (SPINE)
登録日2004-08-23
公開日2004-08-31
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献A copper(I) protein possibly involved in the assembly of CuA center of bacterial cytochrome c oxidase.
Proc.Natl.Acad.Sci.USA, 102, 2005
6QTC
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BU of 6qtc by Molmil
tSH2 domain of transcription elongation factor Spt6 complexed with tyrosine phosphorylated CTD
分子名称: Tyrosine phosphorylated CTD, tSH2 domain of transcription elongation factor Spt6
著者Brazda, P, Krejcikova, M, Smirakova, E, Kubicek, K, Stefl, R.
登録日2019-02-24
公開日2020-07-15
最終更新日2023-11-15
実験手法SOLUTION NMR
主引用文献tSH2 domain of transcription elongation factor Spt6 complexed with tyrosine phosphorylated CTD
To Be Published
5LVF
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BU of 5lvf by Molmil
Solution structure of Rtt103 CTD-interacting domain bound to a Thr4 phosphorylated CTD peptide
分子名称: PRO-SER-TYR-SER-PRO-PTH-SER-PRO-SER-TYR-SER-PRO-THR-SER-PRO-SER, Regulator of Ty1 transposition protein 103
著者Jasnovidova, O, Kubicek, K, Krejcikova, M, Stefl, R.
登録日2016-09-14
公開日2017-05-10
最終更新日2019-10-30
実験手法SOLUTION NMR
主引用文献Structural insight into recognition of phosphorylated threonine-4 of RNA polymerase II C-terminal domain by Rtt103p.
EMBO Rep., 18, 2017
5M9D
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BU of 5m9d by Molmil
Solution structure of Rtt103 CTD-interacting domain bound to a Ser2Ser7 phosphorylated CTD peptide
分子名称: Regulator of Ty1 transposition protein 103, THR-SER-PRO-SEP-TYR-SEP-PRO-THR-SER-PRO-SEP-TYR-SEP-PRO-THR-SER
著者Jasnovidova, O, Kubicek, K, Stefl, R.
登録日2016-11-01
公開日2017-10-11
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structure and dynamics of the RNAPII CTDsome with Rtt103.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7ZPI
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BU of 7zpi by Molmil
Mammalian Dicer in the "dicing state" with pre-miR-15a substrate
分子名称: 59-nt precursor of miR-15a, Endoribonuclease Dicer
著者Zanova, M, Zapletal, D, Kubicek, K, Stefl, R, Pinkas, M, Novacek, J.
登録日2022-04-27
公開日2022-11-16
実験手法ELECTRON MICROSCOPY (5.91 Å)
主引用文献Structural and functional basis of mammalian microRNA biogenesis by Dicer.
Mol.Cell, 82, 2022
7ZPK
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BU of 7zpk by Molmil
Mammalian Dicer in the "pre-dicing state" with pre-miR-15a substrate and TARBP2 subunit
分子名称: 59-nt precursor of miR-15a, Endoribonuclease Dicer, RISC-loading complex subunit TARBP2
著者Zanova, M, Zapletal, D, Kubicek, K, Stefl, R, Pinkas, M, Novacek, J.
登録日2022-04-27
公開日2022-11-16
実験手法ELECTRON MICROSCOPY (3.81 Å)
主引用文献Structural and functional basis of mammalian microRNA biogenesis by Dicer.
Mol.Cell, 82, 2022
7ZPJ
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BU of 7zpj by Molmil
Mammalian Dicer in the "pre-dicing state" with pre-miR-15a substrate and TARBP2 subunit
分子名称: 59-nt precursor of miR-15a, Endoribonuclease Dicer, RISC-loading complex subunit TARBP2 isoform 1
著者Zanova, M, Zapletal, D, Kubicek, K, Stefl, R, Pinkas, M, Novacek, J.
登録日2022-04-27
公開日2022-12-28
実験手法ELECTRON MICROSCOPY (3.81 Å)
主引用文献Structural and functional basis of mammalian microRNA biogenesis by Dicer.
Mol.Cell, 82, 2022
7YYN
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BU of 7yyn by Molmil
Mammalian Dicer in the dicing state with pre-miR-15a substrate
分子名称: 59-nt precursor of miR-15a, Isoform 2 of Endoribonuclease Dicer
著者Zanova, M, Zapletal, D, Kubicek, K, Stefl, R, Pinkas, M, Novacek, J.
登録日2022-02-18
公開日2022-11-16
実験手法ELECTRON MICROSCOPY (6.21 Å)
主引用文献Structural and functional basis of mammalian microRNA biogenesis by Dicer.
Mol.Cell, 82, 2022
7YZ4
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BU of 7yz4 by Molmil
Mouse endoribonuclease Dicer (composite structure)
分子名称: Endoribonuclease Dicer
著者Zanova, M, Zapletal, D, Kubicek, K, Stefl, R, Pinkas, M, Novacek, J.
登録日2022-02-18
公開日2022-11-16
実験手法ELECTRON MICROSCOPY (3.84 Å)
主引用文献Structural and functional basis of mammalian microRNA biogenesis by Dicer.
Mol.Cell, 82, 2022
7YYM
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BU of 7yym by Molmil
Mammalian Dicer in the "pre-dicing state" with pre-miR-15a substrate
分子名称: 59-nt precursor of miR-15a, Endoribonuclease Dicer
著者Zanova, M, Zapletal, D, Kubicek, K, Stefl, R, Pinkas, M, Novacek, J.
登録日2022-02-18
公開日2022-11-16
実験手法ELECTRON MICROSCOPY (4.19 Å)
主引用文献Structural and functional basis of mammalian microRNA biogenesis by Dicer.
Mol.Cell, 82, 2022
7O3D
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BU of 7o3d by Molmil
Cooperation between the intrinsically disordered and ordered regions of Spt6 regulates nucleosome and Pol II CTD binding, and nucleosome assembly
分子名称: Transcription elongation factor SPT6
著者Kasiliauskaite, A, Kubicek, K, Klumpler, T, Zanova, M, Zapletal, D, Novacek, J, Stefl, R.
登録日2021-04-01
公開日2022-04-13
最終更新日2022-06-15
実験手法ELECTRON MICROSCOPY (3.71 Å)
主引用文献Cooperation between intrinsically disordered and ordered regions of Spt6 regulates nucleosome and Pol II CTD binding, and nucleosome assembly.
Nucleic Acids Res., 50, 2022
7O6B
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BU of 7o6b by Molmil
Cooperation between the intrinsically disordered and ordered regions of Spt6 regulates nucleosome and Pol II CTD binding, and nucleosome assembly
分子名称: Transcription elongation factor SPT6
著者Kasiliauskaite, A, Kubicek, K, Klumpler, T, Zanova, M, Zapletal, D, Novacek, J, Stefl, R.
登録日2021-04-09
公開日2022-04-20
最終更新日2022-06-22
実験手法ELECTRON MICROSCOPY (3.88 Å)
主引用文献Cooperation between intrinsically disordered and ordered regions of Spt6 regulates nucleosome and Pol II CTD binding, and nucleosome assembly.
Nucleic Acids Res., 50, 2022
2JQA
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BU of 2jqa by Molmil
Solution structure of apo-DR1885 from Deinococcus radiodurans
分子名称: Hypothetical protein
著者Banci, L, Bertini, I, Ciofi Baffoni, S, Katsari, E, Katsaros, N, Kubicek, K.
登録日2007-05-30
公開日2007-06-12
最終更新日2023-12-20
実験手法SOLUTION NMR
主引用文献A copper(I) protein possibly involved in the assembly of CuA center of bacterial cytochrome c oxidase
Proc.Natl.Acad.Sci.USA, 102, 2005
2KVI
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BU of 2kvi by Molmil
Structure of Nab3 RRM
分子名称: Nuclear polyadenylated RNA-binding protein 3
著者Pergoli, R, Kubicek, K, Hobor, F, Pasulka, J, Stefl, R.
登録日2010-03-15
公開日2010-11-17
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure and RNA-binding study of RNA-recognition motif of Nab3
J.Biol.Chem., 2010
2L41
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BU of 2l41 by Molmil
Nab3 RRM - UCUU complex
分子名称: RNA (5'-R(P*UP*CP*UP*U)-3'), RRM domain from Nuclear polyadenylated RNA-binding protein 3
著者Stefl, R, Pergoli, R, Hobor, F, Kubicek, K, Zimmermann, M, Pasulka, J, Hofr, C.
登録日2010-09-28
公開日2010-11-17
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Recognition of transcription termination signal by the nuclear polyadenylated RNA-binding (NAB) 3 protein
J.Biol.Chem., 286, 2011
2M88
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BU of 2m88 by Molmil
NMR structure of a two-domain RNA-binding fragment of Nrd1
分子名称: Protein NRD1
著者Bacikova, V, Pasulka, J, Kubicek, K, Stefl, R.
登録日2013-05-08
公開日2014-05-14
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure and semi-sequence-specific RNA binding of Nrd1.
Nucleic Acids Res., 42, 2014
2MOW
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BU of 2mow by Molmil
Structure of Nrd1p CID - Trf4p NIM complex
分子名称: Poly(A) RNA polymerase protein 2, Protein NRD1
著者Kabzinski, T, Stefl, R, Kubicek, K.
登録日2014-05-06
公開日2014-08-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Molecular Basis for Coordinating Transcription Termination with Noncoding RNA Degradation.
Mol.Cell, 55, 2014

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件を2024-05-15に公開中

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