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PDB: 96 results

2HS2
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BU of 2hs2 by Molmil
Crystal structure of M46L mutant of HIV-1 protease complexed with TMC114 (darunavir)
Descriptor: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Weber, I.T, Kovalevsky, A.Y, Liu, F.
Deposit date:2006-07-20
Release date:2006-10-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Ultra-high Resolution Crystal Structure of HIV-1 Protease Mutant Reveals Two Binding Sites for Clinical Inhibitor TMC114.
J.Mol.Biol., 363, 2006
2HS1
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BU of 2hs1 by Molmil
Ultra-high resolution X-ray crystal structure of HIV-1 protease V32I mutant with TMC114 (darunavir) inhibitor
Descriptor: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Weber, I.T, Kovalevsky, A.Y.
Deposit date:2006-07-20
Release date:2006-10-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (0.84 Å)
Cite:Ultra-high Resolution Crystal Structure of HIV-1 Protease Mutant Reveals Two Binding Sites for Clinical Inhibitor TMC114.
J.Mol.Biol., 363, 2006
5VK7
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BU of 5vk7 by Molmil
aspartate aminotransferase pH 4.0
Descriptor: Aspartate aminotransferase, cytoplasmic
Authors:Dajnowicz, S, Kovalevsky, A.Y, Mueser, T.C.
Deposit date:2017-04-21
Release date:2017-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Direct visualization of critical hydrogen atoms in a pyridoxal 5'-phosphate enzyme.
Nat Commun, 8, 2017
5VJZ
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BU of 5vjz by Molmil
Joint X-ray/neutron structure of aspartate aminotransferase with alpha-methyl-aspartate at pH 7.5
Descriptor: 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-SUCCINIC ACID, Aspartate aminotransferase, cytoplasmic
Authors:Dajnowicz, S, Kovalevsky, A.Y, Mueser, T.C.
Deposit date:2017-04-20
Release date:2017-11-01
Last modified:2022-03-16
Method:NEUTRON DIFFRACTION (2 Å), X-RAY DIFFRACTION
Cite:Direct visualization of critical hydrogen atoms in a pyridoxal 5'-phosphate enzyme.
Nat Commun, 8, 2017
8EYS
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BU of 8eys by Molmil
X-ray crystal structure of salmonella typhimurium Tryptophan synthase internal aldimine at pH 5.0
Descriptor: Tryptophan synthase alpha chain, Tryptophan synthase beta chain
Authors:Drago, V.N, Kovalevsky, A.Y, Mueser, T.C.
Deposit date:2022-10-28
Release date:2024-02-14
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Neutron diffraction from a microgravity-grown crystal reveals the active site hydrogens of the internal aldimine form of tryptophan synthase.
Cell Rep Phys Sci, 5, 2024
5R42
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BU of 5r42 by Molmil
Crystal Structure of deuterated gamma-Chymotrypsin at pH 7.5, room temperature
Descriptor: IODIDE ION, gamma-Chymotrypsin, peptide SWPW, ...
Authors:Kreinbring, C.A, Wilson, M.A, Kovalevsky, A.Y, Blakeley, M.P, Fisher, S.Z, Lazar, L.M, Moulin, A.G, Novak, W.R, Petsko, G.A, Ringe, D.
Deposit date:2020-02-18
Release date:2021-09-01
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Effect of Temperature and pH on Ionizable Residues in gamma-Chymotrypsin: a X-ray and Neutron Crystallography Study
To be published
5R49
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BU of 5r49 by Molmil
Crystal Structure of gamma-Chymotrypsin at pH 5.6, cryo temperature
Descriptor: IODIDE ION, MALONATE ION, gamma-chymotrypsin, ...
Authors:Kreinbring, C.A, Wilson, M.A, Kovalevsky, A.Y, Blakeley, M.P, Fisher, S.Z, Lazar, L.M, Moulin, A.G, Novak, W.R, Petsko, G.A, Ringe, D.
Deposit date:2020-02-18
Release date:2021-09-01
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Effect of Temperature and pH on Ionizable Residues in gamma-Chymotrypsin: a X-ray and Neutron Crystallography Study
To be published
5R45
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BU of 5r45 by Molmil
Crystal Structure of gamma-Chymotrypsin at pH 7.5, cryo temperature
Descriptor: Chymotrypsinogen A, IODIDE ION, MALONATE ION, ...
Authors:Kreinbring, C.A, Wilson, M.A, Kovalevsky, A.Y, Blakeley, M.P, Fisher, S.Z, Lazar, L.M, Moulin, A.G, Novak, W.R, Petsko, G.A, Ringe, D.
Deposit date:2020-02-18
Release date:2021-09-01
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Effect of Temperature and pH on Ionizable Residues in gamma-Chymotrypsin: a X-ray and Neutron Crystallography Study
To be published
5R4C
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BU of 5r4c by Molmil
Crystal Structure of gamma-Chymotrypsin at pH 9, room temperature
Descriptor: IODIDE ION, SULFATE ION, gamma-chymotrypsin, ...
Authors:Kreinbring, C.A, Wilson, M.A, Kovalevsky, A.Y, Blakeley, M.P, Fisher, S.Z, Lazar, L.M, Moulin, A.G, Novak, W.R, Petsko, G.A, Ringe, D.
Deposit date:2020-02-18
Release date:2021-09-01
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Effect of Temperature and pH on Ionizable Residues in gamma-Chymotrypsin: a X-ray and Neutron Crystallography Study
To be published
5R48
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BU of 5r48 by Molmil
Crystal Structure of gamma-Chymotrypsin at pH 5.6, room temperature
Descriptor: IODIDE ION, SULFATE ION, gamma-chymotrypsin, ...
Authors:Kreinbring, C.A, Wilson, M.A, Kovalevsky, A.Y, Blakeley, M.P, Fisher, S.Z, Lazar, L.M, Moulin, A.G, Novak, W.R, Petsko, G.A, Ringe, D.
Deposit date:2020-02-18
Release date:2021-09-01
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Effect of Temperature and pH on Ionizable Residues in gamma-Chymotrypsin: a X-ray and Neutron Crystallography Study
To be published
5R4A
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BU of 5r4a by Molmil
Crystal Structure of deuterated gamma-Chymotrypsin at pH 9, room temperature
Descriptor: IODIDE ION, SULFATE ION, gamma-chymotrypsin, ...
Authors:Kreinbring, C.A, Wilson, M.A, Kovalevsky, A.Y, Blakeley, M.P, Fisher, S.Z, Lazar, L.M, Moulin, A.G, Novak, W.R, Petsko, G.A, Ringe, D.
Deposit date:2020-02-18
Release date:2021-09-01
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Effect of Temperature and pH on Ionizable Residues in gamma-Chymotrypsin: a X-ray and Neutron Crystallography Study
To be published
5R44
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BU of 5r44 by Molmil
Crystal Structure of gamma-Chymotrypsin at pH 7.5, room temperature
Descriptor: Chymotrypsinogen A, IODIDE ION, peptide SWPW, ...
Authors:Kreinbring, C.A, Wilson, M.A, Kovalevsky, A.Y, Blakeley, M.P, Fisher, S.Z, Lazar, L.M, Moulin, A.G, Novak, W.R, Petsko, G.A, Ringe, D.
Deposit date:2020-02-18
Release date:2021-09-01
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Effect of Temperature and pH on Ionizable Residues in gamma-Chymotrypsin: a X-ray and Neutron Crystallography Study
To be published
5R46
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BU of 5r46 by Molmil
Crystal Structure of deuterated gamma-Chymotrypsin at pH 5.6, room temperature
Descriptor: IODIDE ION, SULFATE ION, gamma-chymotrypsin, ...
Authors:Kreinbring, C.A, Wilson, M.A, Kovalevsky, A.Y, Blakeley, M.P, Fisher, S.Z, Lazar, L.M, Moulin, A.G, Novak, W.R, Petsko, G.A, Ringe, D.
Deposit date:2020-02-18
Release date:2021-09-01
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Effect of Temperature and pH on Ionizable Residues in gamma-Chymotrypsin: a X-ray and Neutron Crystallography Study
To be published
5R43
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BU of 5r43 by Molmil
Crystal Structure of deuterated gamma-Chymotrypsin at pH 7.5, cryo temperature
Descriptor: Chymotrypsinogen A, IODIDE ION, MALONIC ACID, ...
Authors:Kreinbring, C.A, Wilson, M.A, Kovalevsky, A.Y, Blakeley, M.P, Fisher, S.Z, Lazar, L.M, Moulin, A.G, Novak, W.R, Petsko, G.A, Ringe, D.
Deposit date:2020-02-18
Release date:2021-09-01
Method:X-RAY DIFFRACTION (1 Å)
Cite:Effect of Temperature and pH on Ionizable Residues in gamma-Chymotrypsin: a X-ray and Neutron Crystallography Study
To be published
5R4B
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BU of 5r4b by Molmil
Crystal Structure of deuterated gamma-Chymotrypsin at pH 9, cryo temperature
Descriptor: IODIDE ION, SULFATE ION, gamma-chymotrypsin, ...
Authors:Kreinbring, C.A, Wilson, M.A, Kovalevsky, A.Y, Blakeley, M.P, Fisher, S.Z, Lazar, L.M, Moulin, A.G, Novak, W.R, Petsko, G.A, Ringe, D.
Deposit date:2020-02-18
Release date:2021-09-01
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Effect of Temperature and pH on Ionizable Residues in gamma-Chymotrypsin: a X-ray and Neutron Crystallography Study
To be published
5R4D
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BU of 5r4d by Molmil
Crystal Structure of gamma-Chymotrypsin at pH 9, cryo temperature
Descriptor: IODIDE ION, SULFATE ION, gamma-chymotrypsin, ...
Authors:Kreinbring, C.A, Wilson, M.A, Kovalevsky, A.Y, Blakeley, M.P, Fisher, S.Z, Lazar, L.M, Moulin, A.G, Novak, W.R, Petsko, G.A, Ringe, D.
Deposit date:2020-02-18
Release date:2021-09-01
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Effect of Temperature and pH on Ionizable Residues in gamma-Chymotrypsin: a X-ray and Neutron Crystallography Study
To be published
5R47
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BU of 5r47 by Molmil
Crystal Structure of deuterated gamma-Chymotrypsin at pH 5.6, cryo temperature
Descriptor: IODIDE ION, MALONIC ACID, gamma-chymotrypsin, ...
Authors:Kreinbring, C.A, Wilson, M.A, Kovalevsky, A.Y, Blakeley, M.P, Fisher, S.Z, Lazar, L.M, Moulin, A.G, Novak, W.R, Petsko, G.A, Ringe, D.
Deposit date:2020-02-18
Release date:2021-09-01
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Effect of Temperature and pH on Ionizable Residues in gamma-Chymotrypsin: a X-ray and Neutron Crystallography Study
To be published
4PDJ
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BU of 4pdj by Molmil
Neutron crystal Structure of E.coli Dihydrofolate Reductase complexed with folate and NADP+
Descriptor: DIHYDROFOLIC ACID, Dihydrofolate reductase, MANGANESE (II) ION, ...
Authors:Wan, Q, Kovalevsky, A.Y, Wilson, M, Langan, P, Dealwis, C, Bennett, B.
Deposit date:2014-04-18
Release date:2015-04-15
Last modified:2024-04-03
Method:NEUTRON DIFFRACTION (1.599 Å), X-RAY DIFFRACTION
Cite:Toward resolving the catalytic mechanism of dihydrofolate reductase using neutron and ultrahigh-resolution X-ray crystallography.
Proc.Natl.Acad.Sci.USA, 111, 2014
3I6O
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BU of 3i6o by Molmil
Crystal structure of wild type HIV-1 protease with macrocyclic inhibitor GRL-0216A
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(1S,2R)-1-benzyl-2-hydroxy-3-[(7E)-13-methoxy-1,1-dioxido-3,4,5,6,9,10-hexahydro-2H-11,1,2-benzoxathiazacyclotridecin-2-yl]propyl}carbamate, GLYCEROL, IODIDE ION, ...
Authors:Chumanevich, A.A, Wang, Y.-F, Kovalevsky, A.Y, Weber, I.T.
Deposit date:2009-07-07
Release date:2009-09-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Design, Synthesis, Protein-Ligand X-ray Structure, and Biological Evaluation of a Series of Novel Macrocyclic Human Immunodeficiency Virus-1 Protease Inhibitors to Combat Drug Resistance.
J.Med.Chem., 52, 2009
4QX5
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BU of 4qx5 by Molmil
Neutron diffraction reveals hydrogen bonds critical for cGMP-selective activation: Insights for PKG agonist design
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, IODIDE ION, cGMP-dependent protein kinase 1
Authors:Huang, G.Y, Gerlits, O.O, Blakeley, M.P, Sankaran, B, Kovalevsky, A.Y, Kim, C.
Deposit date:2014-07-18
Release date:2014-11-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.318 Å)
Cite:Neutron Diffraction Reveals Hydrogen Bonds Critical for cGMP-Selective Activation: Insights for cGMP-Dependent Protein Kinase Agonist Design.
Biochemistry, 53, 2014
6XKF
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BU of 6xkf by Molmil
The crystal structure of 3CL MainPro of SARS-CoV-2 with oxidized Cys145 (Sulfenic acid cysteine).
Descriptor: 1,2-ETHANEDIOL, 3C-like proteinase, CHLORIDE ION
Authors:Tan, K, Maltseva, N.I, Welk, L.F, Jedrzejczak, R.P, Coates, L, Kovalevskyi, A.Y, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-06-26
Release date:2020-07-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The crystal structure of 3CL MainPro of SARS-CoV-2 with oxidized Cys145 (Sulfenic acid cysteine).
To Be Published
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