Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1653 results

5MLS
DownloadVisualize
BU of 5mls by Molmil
Thrombin Mutant A190S in complex with (S)-1-(D-phenylalanyl)-N-(3-chlorobenzyl)pyrrolidine-2-carboxamide
Descriptor: D-phenylalanyl-N-(3-chlorobenzyl)-L-prolinamide, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Marca, A, Sandner, A, Heine, A, Klebe, G.
Deposit date:2016-12-07
Release date:2017-12-20
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Thrombin Mutante A190S in complex with (S)-1-((R)-2-amino-3,3-diphenylpropanoyl)-N-(4-carbamimidoylbenzyl)pyrrolidine-2-carboxamide
to be published
6RSV
DownloadVisualize
BU of 6rsv by Molmil
Endothiapepsin in complex with 017
Descriptor: 1~{H}-1,2,3,4-tetrazol-5-ylmethyldiazane, DIMETHYL SULFOXIDE, Endothiapepsin, ...
Authors:Magari, F, Heine, A, Klebe, G.
Deposit date:2019-05-22
Release date:2020-07-08
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Endothiapepsin in complex with 017
To Be Published
5MN1
DownloadVisualize
BU of 5mn1 by Molmil
Cationic trypsin in complex with 2-aminopyridine (deuterated sample at 100 K)
Descriptor: 2-AMINOPYRIDINE, CALCIUM ION, Cationic trypsin, ...
Authors:Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-12-12
Release date:2017-05-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.79 Å)
Cite:Charges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin.
Angew. Chem. Int. Ed. Engl., 56, 2017
5M6Y
DownloadVisualize
BU of 5m6y by Molmil
Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with a methylisoquinoline Fasudil-derivative
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 5-(1,4-diazepan-1-ylsulfonyl)-4-methyl-isoquinoline, cAMP-dependent protein kinase catalytic subunit alpha, ...
Authors:Wienen-Schmidt, B, Heine, A, Klebe, G.
Deposit date:2016-10-26
Release date:2018-06-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.367 Å)
Cite:Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with differently methylated Fasudil-derived ligands
To be Published
5MJT
DownloadVisualize
BU of 5mjt by Molmil
Thrombin Mutant A190S in complex with (S) -1 - ((R) -2-amino-3,3-diphenylpropanoyl) -N- (3-chlorobenzyl) pyrrolidine-2-carboxamide
Descriptor: DIMETHYL SULFOXIDE, GLYCEROL, Hirudin variant-2, ...
Authors:Marca, A, Sandner, A, Heine, A, Klebe, G.
Deposit date:2016-12-01
Release date:2017-12-20
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Thrombin Mutant A190S in complex with (S) -1 - ((R) -2-amino-3,3-diphenylpropanoyl) -N- (3-chlorobenzyl) pyrrolidine-2-carboxamide
to be published
5M75
DownloadVisualize
BU of 5m75 by Molmil
Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with a (S)-methyl substitued Fasudil-derivative
Descriptor: 5-[[(2~{S})-2-methyl-1,4-diazepan-1-yl]sulfonyl]isoquinoline, DIMETHYL SULFOXIDE, cAMP-dependent protein kinase catalytic subunit alpha, ...
Authors:Wienen-Schmidt, B, Heine, A, Klebe, G.
Deposit date:2016-10-26
Release date:2018-06-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.538 Å)
Cite:Cocrystal structure of cAMP-dependent Protein Kinase (PKA) in complex with differently methylated Fasudil-derived ligands.
To be Published
5MNC
DownloadVisualize
BU of 5mnc by Molmil
Cationic trypsin in complex with aniline (deuterated sample at 100 K)
Descriptor: ANILINE, CALCIUM ION, Cationic trypsin, ...
Authors:Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-12-13
Release date:2017-05-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.916 Å)
Cite:Charges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin.
Angew. Chem. Int. Ed. Engl., 56, 2017
5MNK
DownloadVisualize
BU of 5mnk by Molmil
Cationic trypsin in complex with benzylamine (deuterated sample at 100 K)
Descriptor: BENZYLAMINE, CALCIUM ION, Cationic trypsin, ...
Authors:Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-12-13
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.799 Å)
Cite:Cationic trypsin in complex with benzylamine (deuterated sample at 100 K)
to be published
5MNM
DownloadVisualize
BU of 5mnm by Molmil
Cationic trypsin in complex with benzylamine (at 295 K)
Descriptor: BENZYLAMINE, CALCIUM ION, Cationic trypsin, ...
Authors:Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-12-13
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.98 Å)
Cite:Cationic trypsin in complex with benzylamine (at 295 K)
to be published
5MOR
DownloadVisualize
BU of 5mor by Molmil
Joint X-ray/neutron structure of cationic trypsin in complex with benzylamine
Descriptor: (phenylmethyl)azanium, CALCIUM ION, Cationic trypsin, ...
Authors:Schiebel, J, Schrader, T.E, Ostermann, A, Heine, A, Klebe, G.
Deposit date:2016-12-14
Release date:2018-02-28
Last modified:2024-05-01
Method:NEUTRON DIFFRACTION (0.98 Å), X-RAY DIFFRACTION
Cite:Joint X-ray/neutron structure of cationic trypsin in complex with benzylamine
to be published
6SDP
DownloadVisualize
BU of 6sdp by Molmil
Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment 4np
Descriptor: Farnesyl diphosphate synthase, P-NITROPHENOL, SULFATE ION, ...
Authors:Magari, F, Heine, A, Klebe, G.
Deposit date:2019-07-29
Release date:2020-08-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment 4np
To Be Published
6SE2
DownloadVisualize
BU of 6se2 by Molmil
Trypanosoma cruzi farnesyl diphosphate synthase apo structure with zinc ions
Descriptor: Farnesyl diphosphate synthase, SULFATE ION, ZINC ION
Authors:Magari, F, Heine, A, Klebe, G.
Deposit date:2019-07-29
Release date:2020-08-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Trypanosoma cruzi farnesyl diphosphate synthase apo structure with zinc ions
To Be Published
5MNQ
DownloadVisualize
BU of 5mnq by Molmil
Cationic trypsin in complex with a derivative of N-amidinopiperidine
Descriptor: (2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[(1-carbamimidoylpiperidin-4-yl)methyl]pyrrolidine-2-carboxamide, CALCIUM ION, Cationic trypsin, ...
Authors:Schiebel, J, Ngo, K, Heine, A, Klebe, G.
Deposit date:2016-12-13
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.337 Å)
Cite:Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes.
Nat Commun, 9, 2018
6SF9
DownloadVisualize
BU of 6sf9 by Molmil
Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment j71
Descriptor: CAFFEINE, Farnesyl diphosphate synthase, SULFATE ION
Authors:Magari, F, Heine, A, Klebe, G.
Deposit date:2019-08-01
Release date:2020-08-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment j71
To Be Published
5MNE
DownloadVisualize
BU of 5mne by Molmil
Cationic trypsin in its apo form (deuterated sample at 100 K)
Descriptor: CALCIUM ION, Cationic trypsin, SULFATE ION
Authors:Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-12-13
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.008 Å)
Cite:Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes.
Nat Commun, 9, 2018
5MNN
DownloadVisualize
BU of 5mnn by Molmil
Cationic trypsin in complex with N-amidinopiperidine (deuterated sample at 100 K)
Descriptor: CALCIUM ION, Cationic trypsin, SULFATE ION, ...
Authors:Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-12-13
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.859 Å)
Cite:Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes.
Nat Commun, 9, 2018
6SDO
DownloadVisualize
BU of 6sdo by Molmil
Trypanosoma cruzi farnesyl diphosphate synthase in complex with 3np
Descriptor: 3-nitrophenol, Farnesyl diphosphate synthase, SULFATE ION, ...
Authors:Magari, F, Heine, A, Klebe, G.
Deposit date:2019-07-29
Release date:2020-08-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Trypanosoma cruzi farnesyl diphosphate synthase in complex with 3np
To Be Published
6SDN
DownloadVisualize
BU of 6sdn by Molmil
Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment j82
Descriptor: 4-NITROCATECHOL, Farnesyl diphosphate synthase, SULFATE ION, ...
Authors:Magari, F, Heine, A, Klebe, G.
Deposit date:2019-07-29
Release date:2020-08-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment j82
To Be Published
6SCV
DownloadVisualize
BU of 6scv by Molmil
Endothiapepsin in complex with ligand 69
Descriptor: Endothiapepsin, GLYCEROL, [(~{R})-cyclohexyl-[1-(2-phenylethyl)-1,2,3,4-tetrazol-5-yl]methyl]diazane
Authors:Magari, F, Heine, A, Klebe, G.
Deposit date:2019-07-25
Release date:2020-08-26
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Endothiapepsin in complex with ligand 69
To Be Published
6SDQ
DownloadVisualize
BU of 6sdq by Molmil
Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment 2m5n
Descriptor: 2-methoxy-5-nitro-phenol, Farnesyl diphosphate synthase, SULFATE ION, ...
Authors:Magari, F, Heine, A, Klebe, G.
Deposit date:2019-07-29
Release date:2020-08-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment 2m5n
To Be Published
5N3B
DownloadVisualize
BU of 5n3b by Molmil
cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule 2-(pyridin-3-yl)ethanamine
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-pyridin-3-ylethylazanium, cAMP dependent protein kinase inhibitor alpha-like protein, ...
Authors:Siefker, C, Heine, A, Klebe, G.
Deposit date:2017-02-08
Release date:2018-02-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:A crystallographic fragment study with cAMP-dependent protein kinase A
To Be Published
5N3N
DownloadVisualize
BU of 5n3n by Molmil
cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule [(2R)-2,4-dihydroxy-4-oxobutyl]-trimethylazanium
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CARNITINE, DIMETHYL SULFOXIDE, ...
Authors:Siefker, C, Heine, A, Klebe, G.
Deposit date:2017-02-08
Release date:2018-02-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.224 Å)
Cite:A crystallographic fragment study with cAMP-dependent protein kinase A
To be Published
5N1O
DownloadVisualize
BU of 5n1o by Molmil
cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule 2-chloro-4-(chloromethyl)-5-hydroxyphenyl)ethan-1-one
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1-[5-chloranyl-3-(chloromethyl)-2-oxidanyl-phenyl]ethanone, cAMP-dependent protein kinase catalytic subunit alpha, ...
Authors:Siefker, C, Heine, A, Klebe, G.
Deposit date:2017-02-06
Release date:2018-02-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A crystallographic fragment study with cAMP-dependent protein kinase A
To Be Published
5N3J
DownloadVisualize
BU of 5n3j by Molmil
cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule 4-Nitrobenzoic acid
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-NITROBENZOIC ACID, DIMETHYL SULFOXIDE, ...
Authors:Siefker, C, Heine, A, Klebe, G.
Deposit date:2017-02-08
Release date:2018-02-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Fragment Binding to Kinase Hinge: If Charge Distribution and Local pK a Shifts Mislead Popular Bioisosterism Concepts.
Angew.Chem.Int.Ed.Engl., 2020
5N6F
DownloadVisualize
BU of 5n6f by Molmil
Crystal structure of TGT in complex with guanine fragment
Descriptor: DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, GUANINE, ...
Authors:Hassaan, E, Heine, A, Klebe, G.
Deposit date:2017-02-15
Release date:2018-03-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.11909521 Å)
Cite:Fragments as Novel Starting Points for tRNA-Guanine Transglycosylase Inhibitors Found by Alternative Screening Strategies.
Chemmedchem, 15, 2020

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon