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PDB: 201 results

7VG4
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BU of 7vg4 by Molmil
10,5-methenyltetrahydrofolate cyclohydrolase from Methylobacterium extorquens AM1 strain
Descriptor: Methenyltetrahydrofolate cyclohydrolase
Authors:Kim, S, Lee, S, Kim, I.-K, Seo, H, Kim, K.-J.
Deposit date:2021-09-14
Release date:2022-07-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Structural insight into a molecular mechanism of methenyltetrahydrofolate cyclohydrolase from Methylobacterium extorquens AM1.
Int.J.Biol.Macromol., 202, 2022
7VG5
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BU of 7vg5 by Molmil
10,5-methenyltetrahydrofolate cyclohydrolase from Methylobacterium extorquens AM1 with tetrahydrofolate
Descriptor: (6S)-5,6,7,8-TETRAHYDROFOLATE, Methenyltetrahydrofolate cyclohydrolase
Authors:Kim, S, Lee, S, Kim, I.-K, Seo, H, Kim, K.-J.
Deposit date:2021-09-14
Release date:2022-07-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural insight into a molecular mechanism of methenyltetrahydrofolate cyclohydrolase from Methylobacterium extorquens AM1.
Int.J.Biol.Macromol., 202, 2022
6VYP
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BU of 6vyp by Molmil
Crystal structure of the LSD1/CoREST histone demethylase bound to its nucleosome substrate
Descriptor: DNA (191-MER), FLAVIN-ADENINE DINUCLEOTIDE, Histone H2A type 1, ...
Authors:Kim, S, Zhu, J, Eek, P, Yennawar, N, Song, T.
Deposit date:2020-02-27
Release date:2020-05-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (4.99 Å)
Cite:Crystal Structure of the LSD1/CoREST Histone Demethylase Bound to Its Nucleosome Substrate.
Mol.Cell, 78, 2020
6KIE
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BU of 6kie by Molmil
Crystal structure of human leucyl-tRNA synthetase, Leu-AMS-bound form
Descriptor: 5'-O-(L-leucylsulfamoyl)adenosine, LEUCINE, Leucine--tRNA ligase, ...
Authors:Kim, S, Son, J, Kim, S, Hwang, K.Y.
Deposit date:2019-07-18
Release date:2021-01-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Leucine-sensing mechanism of leucyl-tRNA synthetase 1 for mTORC1 activation.
Cell Rep, 35, 2021
6KID
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BU of 6kid by Molmil
Crystal structure of human leucyl-tRNA synthetase, ATP-bound form
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, LEUCINE, Leucine--tRNA ligase, ...
Authors:Kim, S, Son, J, Kim, S, Hwang, K.Y.
Deposit date:2019-07-18
Release date:2021-01-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Leucine-sensing mechanism of leucyl-tRNA synthetase 1 for mTORC1 activation.
Cell Rep, 35, 2021
6KQY
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Crystal structure of human leucyl-tRNA synthetase, Leucine-bound form
Descriptor: LEUCINE, Leucine--tRNA ligase, cytoplasmic, ...
Authors:Kim, S, Son, J, Kim, S, Hwang, K.Y.
Deposit date:2019-08-20
Release date:2021-01-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Leucine-sensing mechanism of leucyl-tRNA synthetase 1 for mTORC1 activation.
Cell Rep, 35, 2021
6KR7
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BU of 6kr7 by Molmil
Crystal structure of methylated human leucyl-tRNA synthetase, Leu-AMS-bound form
Descriptor: 5'-O-(L-leucylsulfamoyl)adenosine, LEUCINE, Leucine--tRNA ligase, ...
Authors:Kim, S, Son, J, Kim, S, Hwang, K.Y.
Deposit date:2019-08-21
Release date:2021-01-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (4 Å)
Cite:Leucine-sensing mechanism of leucyl-tRNA synthetase 1 for mTORC1 activation.
Cell Rep, 35, 2021
6K8W
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BU of 6k8w by Molmil
Crystal structure of N-domain with NADP of baterial malonyl-CoA reductase
Descriptor: NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, SULFATE ION
Authors:Kim, S, Kim, K.-J.
Deposit date:2019-06-13
Release date:2020-03-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:Structural insight into bi-functional malonyl-CoA reductase.
Environ.Microbiol., 22, 2020
6K8S
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BU of 6k8s by Molmil
Crystal structure of C-domain of baterial malonyl-CoA reductase
Descriptor: GLYCEROL, NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR, SULFATE ION
Authors:Kim, S, Kim, K.-J.
Deposit date:2019-06-13
Release date:2020-03-18
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insight into bi-functional malonyl-CoA reductase.
Environ.Microbiol., 22, 2020
6K8U
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BU of 6k8u by Molmil
Crystal structure of C-domain with NADP of baterial malonyl-CoA reductase
Descriptor: GLYCEROL, NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Kim, S, Kim, K.-J.
Deposit date:2019-06-13
Release date:2020-03-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insight into bi-functional malonyl-CoA reductase.
Environ.Microbiol., 22, 2020
6K8V
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BU of 6k8v by Molmil
Crystal structure of N-domain of baterial malonyl-CoA reductase
Descriptor: GLYCEROL, NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR, SULFATE ION
Authors:Kim, S, Kim, K.-J.
Deposit date:2019-06-13
Release date:2020-03-18
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insight into bi-functional malonyl-CoA reductase.
Environ.Microbiol., 22, 2020
6K8T
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BU of 6k8t by Molmil
Crystal structure of C-domain with CoA of baterial malonyl-CoA reductase
Descriptor: COENZYME A, GLYCEROL, NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR, ...
Authors:Kim, S, Kim, K.-J.
Deposit date:2019-06-13
Release date:2020-03-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insight into bi-functional malonyl-CoA reductase.
Environ.Microbiol., 22, 2020
6KD7
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BU of 6kd7 by Molmil
Crystal structure of geranylgeranyl pyrophosphate synthase
Descriptor: GLYCEROL, MAGNESIUM ION, PYROPHOSPHATE, ...
Authors:Kim, S, Kim, K.-J.
Deposit date:2019-07-01
Release date:2019-09-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of geranylgeranyl pyrophosphate synthase (crtE) from Nonlabens dokdonensis DSW-6.
Biochem.Biophys.Res.Commun., 518, 2019
5C6F
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BU of 5c6f by Molmil
Crystal structures of ferritin mutants reveal side-on binding to diiron and end-on cleavage of oxygen
Descriptor: Bacterial non-heme ferritin, FE (III) ION, IMIDAZOLE
Authors:Kim, S, Kim, K.H, Seok, J.H, Park, Y.H, Jung, S.W, Chung, Y.B, Lee, D.B, Lee, J.H, Han, K.R, Cho, A.E, Lee, C, Chung, M.S.
Deposit date:2015-06-23
Release date:2016-07-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis of Novel Iron-Uptake Route and Reaction Intermediates in Ferritins from Gram-Negative Bacteria.
J. Mol. Biol., 428, 2016
4JDY
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BU of 4jdy by Molmil
Crystal structure of Rv2606c
Descriptor: GLYCEROL, Pyridoxal biosynthesis lyase PdxS
Authors:Kim, S, Kim, K.-J.
Deposit date:2013-02-25
Release date:2013-05-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Mycobacterium tuberculosis Rv2606c: a pyridoxal biosynthesis lyase.
Biochem.Biophys.Res.Commun., 435, 2013
8IYI
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BU of 8iyi by Molmil
Spermidine synthase from Kluyveromyces lactis
Descriptor: KLLA0B09372p
Authors:Kim, S, Chang, J.H.
Deposit date:2023-04-05
Release date:2023-06-28
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Analysis of Spermidine Synthase from Kluyveromyces lactis.
Molecules, 28, 2023
5Y9D
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BU of 5y9d by Molmil
Crystal structure of acyl-coA oxidase1 from Yarrowia lipolytica
Descriptor: Acyl-coenzyme A oxidase 1, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Kim, S, Kim, K.-J.
Deposit date:2017-08-24
Release date:2018-01-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insight into the substrate specificity of acyl-CoA oxidase1 from Yarrowia lipolytica for short-chain dicarboxylyl-CoAs.
Biochem. Biophys. Res. Commun., 495, 2018
4PRL
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BU of 4prl by Molmil
Crystal structure of D-lactate dehydrogenase with NAD+ from Lactobacillus jensenii
Descriptor: 4-phosphoerythronate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Kim, S, Kim, K.J.
Deposit date:2014-03-06
Release date:2014-06-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure and thermodynamic properties of d-lactate dehydrogenase from Lactobacillus jensenii.
Int.J.Biol.Macromol., 68C, 2014
5YS9
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BU of 5ys9 by Molmil
Crystal structure of acyl-coA oxidase3 from Yarrowia lipolytica
Descriptor: Acyl-coenzyme A oxidase 3, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Kim, S, Kim, K.-J.
Deposit date:2017-11-13
Release date:2018-02-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of Acyl-CoA Oxidase 3 fromYarrowia lipolyticawith Specificity for Short-Chain Acyl-CoA.
J. Microbiol. Biotechnol., 28, 2018
4PRK
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BU of 4prk by Molmil
Crystal structure of D-lactate dehydrogenase (D-LDH) from Lactobacillus jensenii
Descriptor: 4-phosphoerythronate dehydrogenase
Authors:Kim, S, Kim, K.J.
Deposit date:2014-03-06
Release date:2014-06-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structure and thermodynamic properties of d-lactate dehydrogenase from Lactobacillus jensenii.
Int.J.Biol.Macromol., 68C, 2014
7VG9
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BU of 7vg9 by Molmil
Crystal structure of phosphotransbutyrylase from Clostridium acetobutylicum
Descriptor: Phosphate butyryltransferase, SULFATE ION
Authors:Kim, S, Kim, K.-J.
Deposit date:2021-09-15
Release date:2021-10-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Crystal structure and molecular mechanism of phosphotransbutyrylase from Clostridium acetobutylicum .
J Microbiol Biotechnol., 31, 2021
7YA4
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BU of 7ya4 by Molmil
Formate dehydrogenase from Novosphingobium sp. AP12 with NAD and Azide
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, AZIDE ION, ...
Authors:Kim, S, Kim, K.-J.
Deposit date:2022-06-27
Release date:2023-07-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Dual cofactor specific formate dehydrogenase from Novosphingobium sp. AP12 with high activity.
To Be Published
7YA3
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BU of 7ya3 by Molmil
Formate dehydrogenase from Novosphingobium sp. AP12 with NADP and Azide
Descriptor: AZIDE ION, Formate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Kim, S, Kim, K.-J.
Deposit date:2022-06-27
Release date:2023-07-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Dual cofactor specific formate dehydrogenase from Novosphingobium sp. AP12 with high activity.
To Be Published
4YED
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BU of 4yed by Molmil
TcdA (CsdL)
Descriptor: ADENOSINE MONOPHOSPHATE, GLYCEROL, tRNA threonylcarbamoyladenosine dehydratase
Authors:Kim, S, Park, S.Y.
Deposit date:2015-02-24
Release date:2016-01-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Structure of Escherichia coli TcdA (Also Known As CsdL) Reveals a Novel Topology and Provides Insight into the tRNA Binding Surface Required for N(6)-Threonylcarbamoyladenosine Dehydratase Activity
J.Mol.Biol., 427, 2015
4LW4
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BU of 4lw4 by Molmil
Structural changes during cysteine desulfurase CsdA and sulfur-acceptor CsdE interactions provide insight into the trans-persulfuration
Descriptor: Cysteine desulfuration protein CsdE, Cysteine sulfinate desulfinase, PYRIDOXAL-5'-PHOSPHATE
Authors:Kim, S, Park, S.Y.
Deposit date:2013-07-26
Release date:2013-08-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural changes during cysteine desulfurase CsdA and sulfur acceptor CsdE interactions provide insight into the trans-persulfuration.
J.Biol.Chem., 288, 2013

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