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PDB: 705 results

6IWB
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BU of 6iwb by Molmil
Crystal structure of a computationally designed protein (LD3) in complex with BCL-2
Descriptor: Apolipoprotein E, Apoptosis regulator Bcl-2,Apoptosis regulator Bcl-2, SULFATE ION
Authors:Kim, S, Kwak, M.J, Oh, B.-H, Correia, B.E, Gainza, P.
Deposit date:2018-12-05
Release date:2019-12-11
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A computationally designed chimeric antigen receptor provides a small-molecule safety switch for T-cell therapy.
Nat.Biotechnol., 38, 2020
6IEY
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BU of 6iey by Molmil
Crystal structure of Chloramphenicol-Metabolizaing Enzyme EstDL136-Chloramphenicol complex
Descriptor: CHLORAMPHENICOL, Esterase
Authors:Kim, S.H, Kang, P.A, Han, K.T, Lee, S.W, Rhee, S.K.
Deposit date:2018-09-18
Release date:2019-02-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.097 Å)
Cite:Crystal structure of chloramphenicol-metabolizing enzyme EstDL136 from a metagenome.
PLoS ONE, 14, 2019
1SJ0
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BU of 1sj0 by Molmil
Human Estrogen Receptor Alpha Ligand-binding Domain in Complex with the Antagonist Ligand 4-D
Descriptor: (2S,3R)-2-(4-(2-(PIPERIDIN-1-YL)ETHOXY)PHENYL)-2,3-DIHYDRO-3-(4-HYDROXYPHENYL)BENZO[B][1,4]OXATHIIN-6-OL, Estrogen receptor
Authors:Kim, S, Wu, J.Y, Birzin, E.T, Chan, W, Pai, L.Y, Yang, Y.T, Mosley, R.T, Fitzgerald, P.M, Sharma, N, DiNinno, F, Rohrer, S.P, Schaeffer, J.M, Hammond, M.L.
Deposit date:2004-03-02
Release date:2004-04-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Estrogen Receptor Ligands. II. Discovery of Benzoxathiins as Potent, Selective Estrogen Receptor alpha Modulators.
J.Med.Chem., 47, 2004
7KS6
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BU of 7ks6 by Molmil
STRUCTURE OF TETRASACCHARIDE BUILDING BLOCK OF A SULFATED FUCAN FROM LYTECHINUS VARIEGATUS
Descriptor: 4-O-sulfo-alpha-L-fucopyranose-(1-3)-2,4-di-O-sulfo-alpha-L-fucopyranose-(1-3)-2-O-sulfo-alpha-L-fucopyranose-(1-3)-2-O-sulfo-alpha-L-fucopyranose
Authors:Kim, S.B, Thara, R, Aderibigbe, A.O, Doerksen, R.J, Pomin, V.H.
Deposit date:2020-11-21
Release date:2020-12-16
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Conformational properties of l-fucose and the tetrasaccharide building block of the sulfated l-fucan from Lytechinus variegatus.
J.Struct.Biol., 209, 2020
6AA7
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BU of 6aa7 by Molmil
Fluorescent protein from Acropora digitifera
Descriptor: Fluorescent protein
Authors:Kim, S.E, Hwang, K.Y, Nam, K.H.
Deposit date:2018-07-17
Release date:2018-08-22
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Spectral and structural analysis of a red fluorescent protein from Acropora digitifera.
Protein Sci., 28, 2019
6AAE
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BU of 6aae by Molmil
Crystal structure of Chloramphenicol-Metabolizaing Enzyme EstDL136
Descriptor: DI(HYDROXYETHYL)ETHER, Esterase, PENTAETHYLENE GLYCOL
Authors:Kim, S.H, Kang, P.A, Han, K.T, Lee, S.W, Rhee, S.K.
Deposit date:2018-07-18
Release date:2019-02-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.641 Å)
Cite:Crystal structure of chloramphenicol-metabolizing enzyme EstDL136 from a metagenome.
PLoS ONE, 14, 2019
8F8E
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BU of 8f8e by Molmil
Crystal structure of the WDR domain of human DCAF1 in complex with OICR-8268 compound
Descriptor: (3P)-N-[(1S)-3-amino-1-(3-chloro-4-fluorophenyl)-3-oxopropyl]-3-(4-chloro-2-fluorophenyl)-1H-pyrazole-4-carboxamide, CITRIC ACID, DDB1- and CUL4-associated factor 1
Authors:Kimani, S, Li, A, Dong, A, Li, Y, Hutchinson, A, Seitova, A, Wilson, B, Al-Awar, R, Vedadi, M, Brown, P, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2022-11-21
Release date:2023-03-01
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of the WDR domain of human DCAF1 in complex with OICR-8268 compound
To be published
9BKS
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BU of 9bks by Molmil
Crystal structure of the Human TRIP12 WWE domain (isoform 2) in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Isoform 2 of E3 ubiquitin-protein ligase TRIP12
Authors:Kimani, S, Dong, A, Li, Y, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2024-04-29
Release date:2024-07-31
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Crystal structure of the Human TRIP12 WWE domain (isoform 2) in complex with ADP
To be published
9BKR
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BU of 9bkr by Molmil
Crystal structure of the Human TRIP12 WWE domain (isoform 2) in complex with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Isoform 2 of E3 ubiquitin-protein ligase TRIP12, UNKNOWN ATOM OR ION
Authors:Kimani, S, Dong, A, Li, Y, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2024-04-29
Release date:2024-07-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of the Human TRIP12 WWE domain (isoform 2) in complex with ATP
To be published
8GCY
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BU of 8gcy by Molmil
Co-crystal structure of CBL-B in complex with N-Aryl isoindolin-1-one inhibitor
Descriptor: 1,2-ETHANEDIOL, 2-{3-[(1s,3R)-3-methyl-1-(4-methyl-4H-1,2,4-triazol-3-yl)cyclobutyl]phenyl}-6-{[(3S)-3-methylpiperidin-1-yl]methyl}-4-(trifluoromethyl)-2,3-dihydro-1H-isoindol-1-one, E3 ubiquitin-protein ligase CBL-B, ...
Authors:Kimani, S, Zeng, H, Dong, A, Li, Y, Santhakumar, V, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2023-03-03
Release date:2023-03-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:The co-crystal structure of Cbl-b and a small-molecule inhibitor reveals the mechanism of Cbl-b inhibition.
Commun Biol, 6, 2023
5AXM
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BU of 5axm by Molmil
Crystal structure of Thg1 like protein (TLP) with tRNA(Phe)
Descriptor: MAGNESIUM ION, RNA (75-MER), tRNA(His)-5'-guanylyltransferase (Thg1) like protein
Authors:Kimura, S, Suzuki, T, Yu, J, Kato, K, Yao, M.
Deposit date:2015-07-31
Release date:2016-08-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein
Sci Adv, 2, 2016
5AXN
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BU of 5axn by Molmil
Crystal structure of Thg1 like protein (TLP) with tRNA(Phe) and GDPNP
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, RNA (75-MER), ...
Authors:Kimura, S, Suzuki, T, Yu, J, Kato, K, Yao, M.
Deposit date:2015-07-31
Release date:2016-08-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.703 Å)
Cite:Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein
Sci Adv, 2, 2016
5AXL
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BU of 5axl by Molmil
Crystal structure of Thg1 like protein (TLP) with GTP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, tRNA(His)-5'-guanylyltransferase (Thg1) like protein
Authors:Kimura, S, Suzuki, T, Yu, J, Kato, K, Yao, M.
Deposit date:2015-07-31
Release date:2016-08-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.998 Å)
Cite:Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein
Sci Adv, 2, 2016
5AXK
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BU of 5axk by Molmil
Crystal structure of Thg1 like protein (TLP)
Descriptor: GLYCEROL, tRNA(His)-5'-guanylyltransferase (Thg1) like protein
Authors:Kimura, S, Suzuki, T, Yu, J, Kato, K, Yao, M.
Deposit date:2015-07-31
Release date:2016-08-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein
Sci Adv, 2, 2016
4IZT
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BU of 4izt by Molmil
The E41Q mutant of the amidase from Nesterenkonia sp. AN1 showing covalent addition of the acetamide moiety of fluoroacetamide at the active site cysteine
Descriptor: 2-fluoroacetamide, ACETAMIDE, Amidase
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2013-01-30
Release date:2014-02-12
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Covalent modifications of the active site cysteine occur as a result of mutating the glutamate of the catalytic triad in the amidase from Nesterenkonia sp.
To be Published
4IZU
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BU of 4izu by Molmil
The E41Q mutant of the amidase from Nesterenkonia sp. AN1 showing the result of Michael addition of acrylamide at the active site cysteine
Descriptor: Amidase, PROPIONAMIDE, prop-2-enamide
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2013-01-30
Release date:2014-02-12
Last modified:2014-02-19
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Covalent modifications of the active site cysteine occur as a result of mutating the glutamate of the catalytic triad in the amidase from Nesterenkonia sp.
To be Published
4IZV
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BU of 4izv by Molmil
The E41Q/C145A double mutant of the amidase from Nesterenkonia sp. AN1 in complex with acrylamide
Descriptor: Amidase, PROPIONAMIDE, prop-2-enamide
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2013-01-30
Release date:2014-02-12
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Covalent modifications of the active site cysteine occur as a result of mutating the glutamate of the catalytic triad in the amidase from Nesterenkonia sp.
To be Published
4IZW
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BU of 4izw by Molmil
The E41L mutant of the amidase from Nesterenkonia sp. AN1 showing covalent addition of the acetamide moiety of fluoroacetamide at the active site cysteine
Descriptor: 2-fluoroacetamide, ACETAMIDE, Amidase
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2013-01-30
Release date:2014-02-12
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Covalent modifications of the active site cysteine occur as a result of mutating the glutamate of the catalytic triad in the amidase from Nesterenkonia sp.
To be Published
4IZS
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BU of 4izs by Molmil
The C145A mutant of the amidase from Nesterenkonia sp. AN1 in complex with butyramide
Descriptor: Amidase, BUTYRAMIDE, DI(HYDROXYETHYL)ETHER
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2013-01-30
Release date:2014-02-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Covalent modifications of the active site cysteine occur as a result of mutating the glutamate of the catalytic triad in the amidase from Nesterenkonia sp.
To be Published
7SSE
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BU of 7sse by Molmil
Crystal structure of the WDR domain of human DCAF1 in complex with CYCA-117-70
Descriptor: DDB1- and CUL4-associated factor 1, N-[(3R)-1-(3-fluorophenyl)piperidin-3-yl]-6-(morpholin-4-yl)pyrimidin-4-amine
Authors:Kimani, S, Owen, J, Li, A, Dong, A, Li, Y, Hutchinson, A, Seitova, A, Shahani, V.M, Schapira, M, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2021-11-10
Release date:2021-12-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Discovery of a Novel DCAF1 Ligand Using a Drug-Target Interaction Prediction Model: Generalizing Machine Learning to New Drug Targets.
J.Chem.Inf.Model., 63, 2023
5NXZ
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BU of 5nxz by Molmil
A C145A mutant of Nesterenkonia AN1 amidase from the nitrilase superfamily
Descriptor: Amidase
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2017-05-11
Release date:2018-05-30
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Substrate recognition by an amidase of the nitrilase superfamily
To be published
5NYE
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BU of 5nye by Molmil
A C145A mutant of Nesterenkonia AN1 amidase bound to propionamide
Descriptor: Amidase, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2017-05-11
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Substrate recognition by an amidase of the nitrilase superfamily
To be published
5NYB
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BU of 5nyb by Molmil
A C145A mutant of Nesterenkonia AN1 amidase bound to adipamide
Descriptor: Amidase, adipamide
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2017-05-11
Release date:2018-06-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Substrate recognition by an amidase of the nitrilase superfamily
To be published
5NY2
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BU of 5ny2 by Molmil
A C145A mutant of Nesterenkonia AN1 amidase from the nitrilase superfamily
Descriptor: Amidase
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2017-05-11
Release date:2018-06-20
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Substrate recognition by an amidase of the nitrilase superfamily
To be published
5NZ5
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BU of 5nz5 by Molmil
A C145S mutant of Nesterenkonia AN1 amidase from the nitrilase superfamily
Descriptor: Amidase
Authors:Kimani, S.W, Sewell, B.T.
Deposit date:2017-05-12
Release date:2018-06-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Substrate recognition by an amidase of the nitrilase superfamily
To be published

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