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PDB: 81 results

1SMA
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CRYSTAL STRUCTURE OF A MALTOGENIC AMYLASE
Descriptor: MALTOGENIC AMYLASE
Authors:Kim, J.S, Cha, S.S, Oh, B.H.
Deposit date:1999-04-21
Release date:2000-04-26
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of a maltogenic amylase provides insights into a catalytic versatility.
J.Biol.Chem., 274, 1999
1T6S
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Crystal structure of a conserved hypothetical protein from Chlorobium tepidum
Descriptor: NITRATE ION, conserved hypothetical protein
Authors:Kim, J.S, Shin, D.H, Kim, R, Kim, S.H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2004-05-07
Release date:2004-12-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of ScpB from Chlorobium tepidum, a protein involved in chromosome partitioning.
Proteins, 62, 2006
1R6V
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Crystal structure of fervidolysin from Fervidobacterium pennivorans, a keratinolytic enzyme related to subtilisin
Descriptor: CALCIUM ION, subtilisin-like serine protease
Authors:Kim, J.S, Kluskens, L.D, de Vos, W.M, Huber, R, van der Oost, J.
Deposit date:2003-10-17
Release date:2004-10-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of fervidolysin from Fervidobacterium pennivorans, a keratinolytic enzyme related to subtilisin.
J.Mol.Biol., 335, 2004
1YF2
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Three-dimensional structure of DNA sequence specificity (S) subunit of a type I restriction-modification enzyme and its functional implications
Descriptor: Type I restriction-modification enzyme, S subunit
Authors:Kim, J.S, Degiovanni, A, Jancarik, J, Adams, P.D, Yokota, H.A, Kim, R, Kim, S.H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2004-12-30
Release date:2005-02-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications.
Proc.Natl.Acad.Sci.USA, 102, 2005
5CHI
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Crystal structure of PF2046 in complex with ssDNA
Descriptor: DNA (5'-D(P*TP*TP*TP*T)-3'), MAGNESIUM ION, Uncharacterized protein
Authors:Kim, J.S, Hwang, K.Y, Lee, W.C.
Deposit date:2015-07-10
Release date:2016-08-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.472 Å)
Cite:Structural basis of two-nucleotide removal of ssDNA by a cryptic RNase H fold 3'-5' exonuclease PF2046 from Pyrococcus furiosus
to be published
8I07
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Crystal structure of Escherichia coli glyoxylate carboligase double mutant in complex with glycolaldehyde
Descriptor: 2-oxidanylethanal, FLAVIN-ADENINE DINUCLEOTIDE, Glyoxylate carboligase, ...
Authors:Kim, J.H, Kim, J.S.
Deposit date:2023-01-10
Release date:2023-11-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Engineering of two thiamine diphosphate-dependent enzymes for the regioselective condensation of C1-formaldehyde into C4-erythrulose.
Int.J.Biol.Macromol., 253, 2023
8I08
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Crystal structure of Escherichia coli glyoxylate carboligase quadruple mutant
Descriptor: 2,3-DIMETHOXY-5-METHYL-1,4-BENZOQUINONE, FLAVIN-ADENINE DINUCLEOTIDE, Glyoxylate carboligase, ...
Authors:Kim, J.H, Kim, J.S.
Deposit date:2023-01-10
Release date:2023-11-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Engineering of two thiamine diphosphate-dependent enzymes for the regioselective condensation of C1-formaldehyde into C4-erythrulose.
Int.J.Biol.Macromol., 253, 2023
8I01
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Crystal structure of Escherichia coli glyoxylate carboligase
Descriptor: 2,3-DIMETHOXY-5-METHYL-1,4-BENZOQUINONE, FLAVIN-ADENINE DINUCLEOTIDE, Glyoxylate carboligase, ...
Authors:Kim, J.H, Kim, J.S.
Deposit date:2023-01-10
Release date:2023-11-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Engineering of two thiamine diphosphate-dependent enzymes for the regioselective condensation of C1-formaldehyde into C4-erythrulose.
Int.J.Biol.Macromol., 253, 2023
8I05
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Crystal structure of Escherichia coli glyoxylate carboligase double mutant
Descriptor: 2,3-DIMETHOXY-5-METHYL-1,4-BENZOQUINONE, FLAVIN-ADENINE DINUCLEOTIDE, Glyoxylate carboligase, ...
Authors:Kim, J.H, Kim, J.S.
Deposit date:2023-01-10
Release date:2023-11-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Engineering of two thiamine diphosphate-dependent enzymes for the regioselective condensation of C1-formaldehyde into C4-erythrulose.
Int.J.Biol.Macromol., 253, 2023
3CRA
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BU of 3cra by Molmil
Crystal Structure of Escherichia coli MazG, the Regulator of Nutritional Stress Response
Descriptor: Protein mazG
Authors:Lee, S, Kim, M.H, Kang, B.S, Kim, J.S, Kim, Y.G, Kim, K.J.
Deposit date:2008-04-05
Release date:2008-04-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of Escherichia coli MazG, the regulator of nutritional stress response.
J.Biol.Chem., 283, 2008
4PQ1
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Crystal structure and functional implications of a DsbF homologue from Corynebacterium diphtheriae
Descriptor: Putative electron transport related protein
Authors:Um, S.H, Kim, J.S, Yoon, B.Y, Ha, N.C.
Deposit date:2014-02-28
Release date:2014-09-10
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.097 Å)
Cite:Structure of a DsbF homologue from Corynebacterium diphtheriae.
Acta Crystallogr.,Sect.F, 70, 2014
4GKL
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Crystal structure of a noncanonic maltogenic alpha-amylase AmyB from Thermotoga neapolitana
Descriptor: Alpha-amylase
Authors:Ha, N.C, Jun, S.Y, Kim, J.S.
Deposit date:2012-08-13
Release date:2013-02-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of a novel alpha-amylase AmyB from Thermotoga neapolitana that produces maltose from the nonreducing end of polysaccharides
Acta Crystallogr.,Sect.D, 69, 2013
7CXT
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BU of 7cxt by Molmil
Crystal structure of a GDP-6-OMe-4-keto-L-xylo-heptose reductase from C.jejuni
Descriptor: GDP-L-fucose synthase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Kim, J.H, Kim, J.S.
Deposit date:2020-09-02
Release date:2021-04-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of a GDP-6-OMe-4-keto-L-xylo-heptose reductase from Campylobacter jejuni.
Proteins, 2021
5I0Z
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BU of 5i0z by Molmil
Crystal structure of the single domain catalytic antibody 3D8-VH
Descriptor: catalytic DNA antibody
Authors:Park, S.Y, Kim, J.S.
Deposit date:2016-02-04
Release date:2016-02-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the single domain catalytic antibody 3D8-VH
To Be Published
7EEW
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Crystal structure of the intact MTase from Vibrio vulnificus YJ016 in complex with the DNA-mimicking Ocr protein and the S-adenosyl-L-homocysteine (SAH)
Descriptor: Overcome classical restriction gp0.3, S-ADENOSYL-L-HOMOCYSTEINE, Type I restriction-modification system methyltransferase subunit
Authors:Seo, P.W, Park, S.Y, Kim, J.S.
Deposit date:2021-03-19
Release date:2022-03-23
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.896 Å)
Cite:Structural features of a minimal intact methyltransferase of a type I restriction-modification system.
Int.J.Biol.Macromol., 208, 2022
7CT6
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Crystal structure of GCL from Deinococcus metallilatus
Descriptor: Glyoxylate carboligase
Authors:Kim, J.H, Kim, J.S.
Deposit date:2020-08-18
Release date:2021-08-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Glyoxylate carboligase-based whole-cell biotransformation of formaldehyde into ethylene glycol via glycolaldehyde.
Green Chem, 1, 2022
4Z85
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Crystal structur of Pseudomonas fluorescens 2-nitrobenzoate 2-nitroreductase NbaA
Descriptor: 2-nitrobenzoate nitroreductase
Authors:Ha, N.C, Jiao, L, Kim, J.S.
Deposit date:2015-04-08
Release date:2016-01-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and Mechanistic Insights into the Pseudomonas fluorescens 2-Nitrobenzoate 2-Nitroreductase NbaA
Appl.Environ.Microbiol., 81, 2015
7XZ3
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BU of 7xz3 by Molmil
Crystal structure of the Type I-B CRISPR-associated protein, Csh2 from Thermobaculum terrenum
Descriptor: CRISPR-associated protein, Csh2 family
Authors:Seo, P.W, Gu, D.H, Park, S.Y, Kim, J.S.
Deposit date:2022-06-02
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.889 Å)
Cite:Structural characterization of the type I-B CRISPR Cas7 from Thermobaculum terrenum.
Biochim Biophys Acta Proteins Proteom, 1871, 2023
4Y0M
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BU of 4y0m by Molmil
The reduced form of OxyR regulatory domain from Psedomonas aeruginosa
Descriptor: OxyR
Authors:Jo, I, Kim, J.S, Ha, N.C.
Deposit date:2015-02-06
Release date:2015-04-29
Last modified:2018-05-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural details of the OxyR peroxide-sensing mechanism
Proc.Natl.Acad.Sci.USA, 112, 2015
4XWS
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BU of 4xws by Molmil
OxyR regulatory domain C199D mutant from pseudomonas aeruginosa
Descriptor: OxyR
Authors:Jo, I, Kim, J.S, Ha, N.C.
Deposit date:2015-01-29
Release date:2015-04-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.006 Å)
Cite:Structural details of the OxyR peroxide-sensing mechanism
Proc.Natl.Acad.Sci.USA, 112, 2015
4YK9
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BU of 4yk9 by Molmil
Complex structure of BCL-XL and mutated BIM BH3 domain
Descriptor: ACETATE ION, BH3BIM, Bcl-2-like protein 1, ...
Authors:Ha, N.C, Kim, J.S.
Deposit date:2015-03-04
Release date:2016-04-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Complex structure of BCL-XL and mutated BIM BH3 domain
To be published
4WFQ
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Crystal structure of TFIIH subunit
Descriptor: GLYCEROL, SULFATE ION, Suppressor of stem-loop protein 1
Authors:Cho, Y, Kim, J.S, Lim, H.S.
Deposit date:2014-09-17
Release date:2015-02-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the Rad3/XPD regulatory domain of Ssl1/p44
J.Biol.Chem., 290, 2015
6KQB
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A long chain secondary alcohol dehydrogenase of Micrococcus luteus
Descriptor: 3-hydroxybutyryl-CoA dehydrogenase
Authors:Kim, H.J, Kim, J.S.
Deposit date:2019-08-16
Release date:2020-08-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.261 Å)
Cite:Cofactor specificity engineering of a long-chain secondary alcohol dehydrogenase from Micrococcus luteus for redox-neutral biotransformation of fatty acids.
Chem.Commun.(Camb.), 55, 2019
6KQ9
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A long chain secondary alcohol dehydrogenase of Micrococcus luteus
Descriptor: 3-hydroxybutyryl-CoA dehydrogenase
Authors:Kim, H.J, Kim, J.S.
Deposit date:2019-08-16
Release date:2020-08-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.251 Å)
Cite:Cofactor specificity engineering of a long-chain secondary alcohol dehydrogenase from Micrococcus luteus for redox-neutral biotransformation of fatty acids.
Chem.Commun.(Camb.), 55, 2019
6KM9
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Crystal structure of SucA from Vibrio vulnificus
Descriptor: CALCIUM ION, HEXAETHYLENE GLYCOL, MAGNESIUM ION, ...
Authors:Seo, P.W, Kim, J.S.
Deposit date:2019-07-31
Release date:2020-08-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.724 Å)
Cite:Understanding the molecular properties of the E1 subunit (SucA) of alpha-ketoglutarate dehydrogenase complex from Vibrio vulnificus for the enantioselective ligation of acetaldehydes into (R)-acetoin.
Catalysis Science And Technology, 2020

 

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