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PDB: 651 件

4NWQ
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Computationally Designed Two-Component Self-Assembling Tetrahedral Cage, T33-21, Crystallized in Space Group F4132
分子名称: Putative uncharacterized protein PH0671, SULFATE ION, Uncharacterized protein
著者McNamara, D.E, King, N.P, Bale, J.B, Sheffler, W, Baker, D, Yeates, T.O.
登録日2013-12-06
公開日2014-05-28
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Accurate design of co-assembling multi-component protein nanomaterials.
Nature, 510, 2014
4NWR
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Computationally Designed Two-Component Self-Assembling Tetrahedral Cage T33-28
分子名称: Macrophage migration inhibitory factor-like protein, integron gene cassette protein
著者McNamara, D.E, King, N.P, Bale, J.B, Sheffler, W, Baker, D, Yeates, T.O.
登録日2013-12-06
公開日2014-05-28
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Accurate design of co-assembling multi-component protein nanomaterials.
Nature, 510, 2014
4NWO
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Computationally Designed Two-Component Self-Assembling Tetrahedral Cage T33-15
分子名称: CALCIUM ION, Chorismate mutase AroH, Molybdenum cofactor biosynthesis protein MogA
著者McNamara, D.E, King, N.P, Bale, J.B, Sheffler, W, Baker, D, Yeates, T.O.
登録日2013-12-06
公開日2014-05-28
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Accurate design of co-assembling multi-component protein nanomaterials.
Nature, 510, 2014
4PQ8
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Crystal Structure of Engineered Protein, Northeast Structural Genomics Consortium Target OR465
分子名称: CHLORIDE ION, DESIGNED PROTEIN OR465
著者Vorobiev, S, Parmeggiani, F, Seetharaman, J, Janjua, H, Xiao, R, Maglaqui, M, Park, K, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J, Northeast Structural Genomics Consortium (NESG)
登録日2014-02-28
公開日2014-03-12
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.833 Å)
主引用文献Crystal Structure of Engineered Protein OR465.
To be Published
4PSJ
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Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium (NESG) Target OR464.
分子名称: OR464
著者Vorobiev, S, Parmeggiani, F, Seetharaman, J, Huang, P.-S, Janjua, H, Xiao, R, Maglaqui, M, Park, K, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J, Northeast Structural Genomics Consortium (NESG)
登録日2014-03-07
公開日2014-03-26
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.992 Å)
主引用文献Crystal Structure of Engineered Protein OR464.
To be Published
6MEP
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Crystal structure of the catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with inhibitor UNC3437
分子名称: CHLORIDE ION, MAGNESIUM ION, Tyrosine-protein kinase Mer, ...
著者Da, C, Zhang, D, Stashko, M.A, Cheng, A, Hunter, D, Norris-Drouin, J, Graves, L, Machius, M, Miley, M.J, DeRyckere, D, Earp, H.S, Graham, D.K, Frye, S.V, Wang, X, Kireev, D.
登録日2018-09-06
公開日2019-09-11
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.893 Å)
主引用文献Data-Driven Construction of Antitumor Agents with Controlled Polypharmacology.
J.Am.Chem.Soc., 141, 2019
4NE7
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Crystal Structure of engineered Kumamolisin-As from Alicyclobacillus sendaiensis, Northeast Structural Genomics Consortium (NESG) Target OR367
分子名称: Kumamolisin-As, ZINC ION
著者Guan, R, Pultz, I.S, Siegel, J.B, Seetharaman, J, Kornhaber, G, Maglaqui, M, Mao, L, Xiao, R, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2013-10-28
公開日2013-11-20
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.497 Å)
主引用文献Northeast Structural Genomics Consortium Target OR367
To be Published
4NWN
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Computationally Designed Two-Component Self-Assembling Tetrahedral Cage T32-28
分子名称: Propanediol utilization: polyhedral bodies pduT, Uncharacterized protein
著者McNamara, D.E, King, N.P, Bale, J.B, Sheffler, W, Baker, D, Yeates, T.O.
登録日2013-12-06
公開日2014-05-28
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (4.5 Å)
主引用文献Accurate design of co-assembling multi-component protein nanomaterials.
Nature, 510, 2014
3U19
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CRYSTAL STRUCTURE OF ACYLENZYME INTERMEDIATE OF DE NOVO DESIGNED CYSTEINE ESTERASE ECH13, Northeast Structural Genomics Consortium Target OR51
分子名称: GLYCEROL, artificial protein OR51
著者Kuzin, A, Su, M, Seetharaman, J, Sahdev, S, Xiao, R, Kohan, E, Richter, F, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2011-09-29
公開日2011-10-26
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献CRYSTAL STRUCTURE OF ACYLENZYME INTERMEDIATE OF DE NOVO DESIGNED CYSTEINE ESTERASE ECH13, Northeast Structural Genomics Consortium Target OR51
To be Published
4PWW
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BU of 4pww by Molmil
Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR494.
分子名称: ACETIC ACID, OR494, PHOSPHATE ION
著者Vorobiev, S, Lin, Y.-R, Seetharaman, J, Xiao, R, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
登録日2014-03-21
公開日2014-04-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.471 Å)
主引用文献Crystal Structure of Engineered Protein OR494.
To be Published
3SY1
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BU of 3sy1 by Molmil
Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR70
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETIC ACID, UPF0001 protein yggS
著者Vorobiev, S, Su, M, Nivon, L, Seetharaman, J, Sahdev, S, Xiao, R, Ciccosanti, C, Maglaqui, M, Baker, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2011-07-15
公開日2011-08-03
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.465 Å)
主引用文献Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR70
To be Published
1PVH
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BU of 1pvh by Molmil
Crystal structure of leukemia inhibitory factor in complex with gp130
分子名称: IODIDE ION, Interleukin-6 receptor beta chain, Leukemia inhibitory factor
著者Boulanger, M.J, Bankovich, A.J, Kortemme, T, Baker, D, Garcia, K.C.
登録日2003-06-27
公開日2003-10-14
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Convergent mechanisms for recognition of divergent cytokines by the shared signaling receptor gp130.
Mol.Cell, 12, 2003
4D49
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Crystal structure of computationally designed armadillo repeat proteins for modular peptide recognition.
分子名称: ARGININE, ARMADILLO REPEAT PROTEIN ARM00027, POLY ARG DECAPEPTIDE
著者Reichen, C, Forzani, C, Zhou, T, Parmeggiani, F, Fleishman, S.J, Mittl, P.R.E, Madhurantakam, C, Honegger, A, Ewald, C, Zerbe, O, Baker, D, Caflisch, A, Pluckthun, A.
登録日2014-10-27
公開日2016-01-13
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Computationally Designed Armadillo Repeat Proteins for Modular Peptide Recognition.
J.Mol.Biol., 428, 2016
4D4E
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BU of 4d4e by Molmil
Crystal structure of computationally designed armadillo repeat proteins for modular peptide recognition.
分子名称: ARMADILLO REPEAT PROTEIN ARM00016, GLYCEROL
著者Reichen, C, Forzani, C, Zhou, T, Parmeggiani, F, Fleishman, S.J, Mittl, P.R.E, Madhurantakam, C, Honegger, A, Ewald, C, Zerbe, O, Baker, D, Caflisch, A, Pluckthun, A.
登録日2014-10-28
公開日2016-01-13
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Computationally Designed Armadillo Repeat Proteins for Modular Peptide Recognition.
J.Mol.Biol., 428, 2016
4DDF
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BU of 4ddf by Molmil
Computationally Designed Self-assembling Octahedral Cage protein, O333, Crystallized in space group P4
分子名称: CHLORIDE ION, Propanediol utilization polyhedral body protein PduT, SULFATE ION
著者Sawaya, M.R, King, N.P, Sheffler, W, Baker, D, Yeates, T.O.
登録日2012-01-18
公開日2012-06-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Computational design of self-assembling protein nanomaterials with atomic level accuracy.
Science, 336, 2012
3J02
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BU of 3j02 by Molmil
Lidless D386A Mm-cpn in the pre-hydrolysis ATP-bound state
分子名称: Lidless D386A Mm-cpn variant
著者Zhang, J, Ma, B, DiMaio, F, Douglas, N.R, Joachimiak, L, Baker, D, Frydman, J, Levitt, M, Chiu, W.
登録日2011-02-10
公開日2011-05-18
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (8 Å)
主引用文献Cryo-EM structure of a group II chaperonin in the prehydrolysis ATP-bound state leading to lid closure.
Structure, 19, 2011
3J1X
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A refined model of the prototypical Salmonella typhimurium T3SS basal body reveals the molecular basis for its assembly
分子名称: Protein PrgH
著者Sgourakis, N.G, Bergeron, J.R.C, Worrall, L.J, Strynadka, N.C.J, Baker, D.
登録日2012-07-10
公開日2013-05-22
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (11.7 Å)
主引用文献A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly.
Plos Pathog., 9, 2013
3J6E
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Energy minimized average structure of Microtubules stabilized by GmpCpp
分子名称: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, ...
著者Alushin, G.M, Lander, G.C, Kellogg, E.H, Zhang, R, Baker, D, Nogales, E.
登録日2014-02-18
公開日2014-06-04
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献High-Resolution Microtubule Structures Reveal the Structural Transitions in alpha beta-Tubulin upon GTP Hydrolysis.
Cell(Cambridge,Mass.), 157, 2014
3J89
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Structural Plasticity of Helical Nanotubes Based on Coiled-Coil Assemblies
分子名称: synthetic peptide
著者Egelman, E.H, Xu, C, DiMaio, F, Magnotti, E, Modlin, C, Yu, X, Wright, E, Baker, D, Conticello, V.P.
登録日2014-10-07
公開日2015-02-11
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structural plasticity of helical nanotubes based on coiled-coil assemblies.
Structure, 23, 2015
3J6F
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Minimized average structure of GDP-bound dynamic microtubules
分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Alushin, G.M, Lander, G.C, Kellogg, E.H, Zhang, R, Baker, D, Nogales, E.
登録日2014-02-19
公開日2014-06-04
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (4.9 Å)
主引用文献High-Resolution Microtubule Structures Reveal the Structural Transitions in alpha beta-Tubulin upon GTP Hydrolysis.
Cell(Cambridge,Mass.), 157, 2014
4R80
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Crystal Structure of a De Novo Designed Beta Sheet Protein, Cystatin Fold, Northeast Structural Genomics Consortium (NESG) Target OR486
分子名称: OR486
著者Guan, R, Marcos, E, O'Connell, P, Seetharaman, J, Janjua, H, Xiao, R, Maglaqui, M, Acton, T.B, Everett, J.K, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2014-08-29
公開日2014-09-24
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.445 Å)
主引用文献Crystal Structure of an engineered protein with denovo beta sheet design, Northeast Structural Genomics Consortium (NESG) Target OR486
To be Published
7KUW
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BU of 7kuw by Molmil
High-throughput design and refinement of stable proteins using sequence-only models
分子名称: Sequence-Based Designed Protein nmt_0994_guided_02
著者Bera, A.K, Stewart, L, Kang, A.S, Baker, D.
登録日2020-11-25
公開日2021-12-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献Large-scale design and refinement of stable proteins using sequence-only models.
Plos One, 17, 2022
7QFJ
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BU of 7qfj by Molmil
Crystal structure of S-layer protein SlpX from Lactobacillus acidophilus, domain II (aa 194-362)
分子名称: SlpX
著者Sagmeister, T, Pavkov-Keller, T, Buhlheller, C, Baek, M, Read, R, Baker, D.
登録日2021-12-06
公開日2022-12-21
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The molecular architecture of Lactobacillus S-layer: Assembly and attachment to teichoic acids.
Proc.Natl.Acad.Sci.USA, 121, 2024
1HZ5
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CRYSTAL STRUCTURES OF THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS, WITH A TYROSINE TO TRYPTOPHAN SUBSTITUTION
分子名称: PROTEIN L, ZINC ION
著者O'Neill, J.W, Kim, D.E, Baker, D, Zhang, K.Y.J.
登録日2001-01-23
公開日2001-04-04
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structures of the B1 domain of protein L from Peptostreptococcus magnus with a tyrosine to tryptophan substitution.
Acta Crystallogr.,Sect.D, 57, 2001
1HZ6
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CRYSTAL STRUCTURES OF THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS WITH A TYROSINE TO TRYPTOPHAN SUBSTITUTION
分子名称: PROTEIN L
著者O'Neill, J.W, Kim, D.E, Baker, D, Zhang, K.Y.J.
登録日2001-01-23
公開日2001-04-04
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structures of the B1 domain of protein L from Peptostreptococcus magnus with a tyrosine to tryptophan substitution.
Acta Crystallogr.,Sect.D, 57, 2001

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