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PDB: 84 件

6KNF
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CryoEM map and model of Nitrite Reductase at pH 6.2
分子名称: COPPER (II) ION, Copper-containing nitrite reductase
著者Adachi, N, Yamaguchi, T, Moriya, T, Kawasaki, M, Koiwai, K, Shinoda, A, Yamada, Y, Yumoto, F, Kohzuma, T, Senda, T.
登録日2019-08-05
公開日2020-08-12
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.99 Å)
主引用文献2.85 and 2.99 angstrom resolution structures of 110 kDa nitrite reductase determined by 200 kV cryogenic electron microscopy.
J.Struct.Biol., 213, 2021
6KNG
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CryoEM map and model of Nitrite Reductase at pH 8.1
分子名称: COPPER (II) ION, Copper-containing nitrite reductase
著者Adachi, N, Yamaguchi, T, Moriya, T, Kawasaki, M, Koiwai, K, Shinoda, A, Yamada, Y, Yumoto, F, Kohzuma, T, Senda, T.
登録日2019-08-05
公開日2020-08-12
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.85 Å)
主引用文献2.85 and 2.99 angstrom resolution structures of 110 kDa nitrite reductase determined by 200 kV cryogenic electron microscopy.
J.Struct.Biol., 213, 2021
2ZAO
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BU of 2zao by Molmil
Crystal structure of mouse SKD1/VPS4B ADP-form
分子名称: ADENOSINE-5'-DIPHOSPHATE, Vacuolar protein sorting-associating protein 4B
著者Inoue, M, Kawasaki, M, Kamikubo, H, Kataoka, M, Kato, R, Yoshimori, T, Wakatsuki, S.
登録日2007-10-08
公開日2008-10-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B
Traffic, 9, 2008
2ZND
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BU of 2znd by Molmil
Crystal structure of Ca2+-free form of des3-20ALG-2
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, PHOSPHATE ION, Programmed cell death protein 6, ...
著者Suzuki, H, Kawasaki, M, Inuzuka, T, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
登録日2008-04-22
公開日2008-09-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural Basis for Ca(2+)-Dependent Formation of ALG-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism
Structure, 16, 2008
2ZAN
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BU of 2zan by Molmil
Crystal structure of mouse SKD1/VPS4B ATP-form
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Vacuolar protein sorting-associating protein 4B
著者Inoue, M, Kawasaki, M, Kamikubo, H, Kataoka, M, Kato, R, Yoshimori, T, Wakatsuki, S.
登録日2007-10-08
公開日2008-10-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B
Traffic, 9, 2008
2ZAM
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BU of 2zam by Molmil
Crystal structure of mouse SKD1/VPS4B apo-form
分子名称: Vacuolar protein sorting-associating protein 4B
著者Inoue, M, Kawasaki, M, Kamikubo, H, Kataoka, M, Kato, R, Yoshimori, T, Wakatsuki, S.
登録日2007-10-08
公開日2008-10-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B
Traffic, 9, 2008
2ZN9
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Crystal structure of Ca2+-bound form of des3-20ALG-2
分子名称: CALCIUM ION, DODECAETHYLENE GLYCOL, NONAETHYLENE GLYCOL, ...
著者Suzuki, H, Kawasaki, M, Inuzuka, T, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
登録日2008-04-22
公開日2008-09-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural Basis for Ca(2+)-Dependent Formation of ALG-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism
Structure, 16, 2008
2ZNE
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BU of 2zne by Molmil
Crystal structure of Zn2+-bound form of des3-23ALG-2 complexed with Alix ABS peptide
分子名称: 16-meric peptide from Programmed cell death 6-interacting protein, Programmed cell death protein 6, SODIUM ION, ...
著者Suzuki, H, Kawasaki, M, Inuzuka, T, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
登録日2008-04-22
公開日2008-09-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural Basis for Ca(2+)-Dependent Formation of ALG-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism
Structure, 16, 2008
2ZN8
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Crystal structure of Zn2+-bound form of ALG-2
分子名称: Programmed cell death protein 6, SODIUM ION, ZINC ION
著者Suzuki, H, Kawasaki, M, Inuzuka, T, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
登録日2008-04-22
公開日2008-09-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural Basis for Ca(2+)-Dependent Formation of ALG-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism
Structure, 16, 2008
2ZRT
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BU of 2zrt by Molmil
Crystal structure of Zn2+-bound form of des3-23ALG-2
分子名称: Programmed cell death protein 6, ZINC ION
著者Suzuki, H, Kawasaki, M, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
登録日2008-09-01
公開日2008-11-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Crystallization and X-ray diffraction analysis of N-terminally truncated human ALG-2
ACTA CRYSTALLOGR.,SECT.F, 64, 2008
2ZRS
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BU of 2zrs by Molmil
Crystal structure of Ca2+-bound form of des3-23ALG-2
分子名称: CALCIUM ION, Programmed cell death protein 6
著者Suzuki, H, Kawasaki, M, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
登録日2008-09-01
公開日2008-11-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Crystallization and X-ray diffraction analysis of N-terminally truncated human ALG-2
ACTA CRYSTALLOGR.,SECT.F, 64, 2008
2ZVO
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BU of 2zvo by Molmil
NEMO CoZi domain in complex with diubiquitin in C2 space group
分子名称: NF-kappa-B essential modulator, UBC protein
著者Rahighi, S, Ikeda, F, Kawasaki, M, Akutsu, M, Suzuki, N, Kato, R, Kensche, T, Uejima, T, Bloor, S, Komander, D, Randow, F, Wakatsuki, S, Dikic, I.
登録日2008-11-12
公開日2009-03-24
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation
Cell(Cambridge,Mass.), 136, 2009
7F3E
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BU of 7f3e by Molmil
Cryo-EM structure of the minimal protein-only RNase P from Aquifex aeolicus
分子名称: RNA-free ribonuclease P
著者Teramoto, T, Koyasu, T, Adachi, N, Kawasaki, M, Moriya, T, Numata, T, Senda, T, Kakuta, Y.
登録日2021-06-16
公開日2021-08-11
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.62 Å)
主引用文献Minimal protein-only RNase P structure reveals insights into tRNA precursor recognition and catalysis.
J.Biol.Chem., 297, 2021
2ZVN
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BU of 2zvn by Molmil
NEMO CoZi domain incomplex with diubiquitin in P212121 space group
分子名称: NF-kappa-B essential modulator, UBC protein
著者Rahighi, S, Ikeda, F, Kawasaki, M, Akutsu, M, Suzuki, N, Kato, R, Kensche, T, Uejima, T, Bloor, S, Komander, D, Randow, F, Wakatsuki, S, Dikic, I.
登録日2008-11-12
公開日2009-03-24
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation
Cell(Cambridge,Mass.), 136, 2009
3AAK
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BU of 3aak by Molmil
Crystal structure of Zn2+-bound form of des3-20ALG-2F122A
分子名称: Programmed cell death protein 6, ZINC ION
著者Inuzuka, T, Suzuki, H, Kawasaki, M, Shibata, H, Wakatsuki, S, Maki, M.
登録日2009-11-19
公開日2010-09-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Molecular basis for defect in Alix-binding by alternatively spliced isoform of ALG-2 (ALG-2DeltaGF122) and structural roles of F122 in target recognition
Bmc Struct.Biol., 10, 2010
7CN1
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BU of 7cn1 by Molmil
Cryo-EM structure of K+-bound hERG channel in the presence of astemizole
分子名称: POTASSIUM ION, potassium channel
著者Asai, T, Adachi, N, Moriya, T, Kawasaki, M, Suzuki, K, Senda, T, Murata, T.
登録日2020-07-29
公開日2021-01-20
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Cryo-EM Structure of K + -Bound hERG Channel Complexed with the Blocker Astemizole.
Structure, 29, 2021
3AAJ
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BU of 3aaj by Molmil
Crystal structure of Ca2+-bound form of des3-23ALG-2deltaGF122
分子名称: CALCIUM ION, Programmed cell death protein 6
著者Suzuki, H, Inuzuka, T, Kawasaki, M, Shibata, H, Wakatsuki, S, Maki, M.
登録日2009-11-19
公開日2010-09-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular basis for defect in Alix-binding by alternatively spliced isoform of ALG-2 (ALG-2DeltaGF122) and structural roles of F122 in target recognition
Bmc Struct.Biol., 10, 2010
7CN0
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BU of 7cn0 by Molmil
Cryo-EM structure of K+-bound hERG channel
分子名称: POTASSIUM ION, potassium channel 1
著者Asai, T, Adachi, N, Moriya, T, Kawasaki, M, Suzuki, K, Senda, T, Murata, T.
登録日2020-07-29
公開日2021-01-20
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Cryo-EM Structure of K + -Bound hERG Channel Complexed with the Blocker Astemizole.
Structure, 29, 2021
3AI4
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BU of 3ai4 by Molmil
Crystal structure of yeast enhanced green fluorescent protein - mouse polymerase iota ubiquitin binding motif fusion protein
分子名称: SULFATE ION, yeast enhanced green fluorescent protein,DNA polymerase iota
著者Suzuki, N, Wakatsuki, S, Kawasaki, M.
登録日2010-05-10
公開日2010-09-29
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystallization of small proteins assisted by green fluorescent protein
Acta Crystallogr.,Sect.D, 66, 2010
3AI5
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BU of 3ai5 by Molmil
Crystal structure of yeast enhanced green fluorescent protein-ubiquitin fusion protein
分子名称: 1,2-ETHANEDIOL, yeast enhanced green fluorescent protein,Ubiquitin
著者Suzuki, N, Wakatsuki, S, Kawasaki, M.
登録日2010-05-10
公開日2010-09-29
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystallization of small proteins assisted by green fluorescent protein
Acta Crystallogr.,Sect.D, 66, 2010
3VTW
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BU of 3vtw by Molmil
Crystal structure of T7-tagged Optineurin LIR-fused human LC3B_2-119
分子名称: Optineurin, microtubule-associated proteins 1A/1B light chain 3B, SULFATE ION
著者Suzuki, H, Kawasaki, M, Kato, R, Wakatsuki, S.
登録日2012-06-08
公開日2013-06-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献Structural basis for phosphorylation-triggered autophagic clearance of Salmonella
Biochem.J., 454, 2013
3VTU
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BU of 3vtu by Molmil
Crystal structure of human LC3B_2-119
分子名称: Microtubule-associated proteins 1A/1B light chain 3B, SULFATE ION
著者Suzuki, H, Kawasaki, M, Kato, R, Wakatsuki, S.
登録日2012-06-08
公開日2013-06-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural basis for phosphorylation-triggered autophagic clearance of Salmonella
Biochem.J., 454, 2013
3VHS
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BU of 3vhs by Molmil
Crystal structure of UBZ of human WRNIP1
分子名称: ATPase WRNIP1, SODIUM ION, ZINC ION
著者Suzuki, N, Wakatsuki, S, Kawasaki, M.
登録日2011-09-06
公開日2012-10-10
最終更新日2016-06-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1.
Febs J., 2016
3VTV
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BU of 3vtv by Molmil
Crystal structure of Optineurin LIR-fused human LC3B_2-119
分子名称: Optineurin, microtubule-associated proteins 1A/1B light chain 3B, SULFATE ION
著者Suzuki, H, Kawasaki, M, Kato, R, Wakatsuki, S.
登録日2012-06-08
公開日2013-06-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis for phosphorylation-triggered autophagic clearance of Salmonella
Biochem.J., 454, 2013
3WAO
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BU of 3wao by Molmil
Crystal structure of Atg13 LIR-fused human LC3B_2-119
分子名称: Autophagy-related protein 13, Microtubule-associated proteins 1A/1B light chain 3B
著者Suzuki, H, Tabata, K, Morita, E, Kawasaki, M, Kato, R, Dobson, R.C.J, Yoshimori, T, Wakatsuki, S.
登録日2013-05-06
公開日2013-12-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism.
Structure, 22, 2014

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