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PDB: 98 件
8Z8P
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norbelladine 4'-O-methyltransferase S52M variant complexed with Mg and SAH
分子名称: GLYCEROL, MAGNESIUM ION, Norbelladine 4'-O-methyltransferase, ...
著者Saw, Y.Y.H, Nakashima, Y, Morita, H.
登録日2024-04-22
公開日2024-08-07
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8Z8O
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norbelladine 4'-O-methyltransferase Y186F complexed with Mg and SAH
分子名称: GLYCEROL, MAGNESIUM ION, Norbelladine 4'-O-methyltransferase, ...
著者Saw, Y.Y.H, Nakashima, Y, Morita, H.
登録日2024-04-22
公開日2024-08-07
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8XDT
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O-methyltransferase from Lycoris longituba M52T variant complexed with Mg and SAH
分子名称: MAGNESIUM ION, S-ADENOSYL-L-HOMOCYSTEINE, norbelladine O-methyltransferase
著者Saw, Y.Y.H, Nakashima, Y, Morita, H.
登録日2023-12-11
公開日2024-08-07
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8ZFW
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norbelladine 4'-O-methyltransferase S52T Y186F complexed with Mg and SAH
分子名称: GLYCEROL, MAGNESIUM ION, Norbelladine, ...
著者Saw, Y.Y.H, Nakashima, Y, Morita, H.
登録日2024-05-08
公開日2024-08-07
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
7Q5X
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BU of 7q5x by Molmil
HIF PROLYL HYDROXYLASE 2 (PHD2/EGLN1) IN COMPLEX WITH 2-OXOGLUTARATE (2OG) AND HIF-2 ALPHA CODD (523-542)
分子名称: 2-OXOGLUTARIC ACID, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Figg Jr, W.D, McDonough, M.A, Chowdhury, R, Nakashima, Y, Schofield, C.J.
登録日2021-11-04
公開日2022-11-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.21 Å)
主引用文献Structural basis for binding of the renal carcinoma target hypoxia-inducible factor 2 alpha to prolyl hydroxylase domain 2.
Proteins, 91, 2023
7Q5V
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HIF PROLYL HYDROXYLASE 2 (PHD2/EGLN1) IN COMPLEX WITH N-OXALYLGLYCINE (NOG) AND HIF-2 ALPHA CODD (523-542)
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, Egl nine homolog 1, ...
著者Figg Jr, W.D, McDonough, M.A, Chowdhury, R, Nakashima, Y, Schofield, C.J.
登録日2021-11-04
公開日2022-11-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.17 Å)
主引用文献Structural basis for binding of the renal carcinoma target hypoxia-inducible factor 2 alpha to prolyl hydroxylase domain 2.
Proteins, 91, 2023
6ZBO
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BU of 6zbo by Molmil
HIF Prolyl Hydroxylase 2 (PHD2/EGLN1) in Complex with 1-(6-morpholinopyrimidin-4-yl)-4-(1H-1,2,3-triazol-1-yl)-1H-pyrazol-5-ol (Molidustat)
分子名称: 2-(6-morpholin-4-ylpyrimidin-4-yl)-4-(1,2,3-triazol-1-yl)pyrazol-3-ol, CHLORIDE ION, Egl nine homolog 1, ...
著者Figg Jr, W.D, McDonough, M.A, Nakashima, Y, Holt-Martyn, J.P, Schofield, C.J.
登録日2020-06-08
公開日2021-04-07
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Structural Basis of Prolyl Hydroxylase Domain Inhibition by Molidustat.
Chemmedchem, 16, 2021
6ZBN
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BU of 6zbn by Molmil
HIF Prolyl Hydroxylase 2 (PHD2/EGLN1) in complex with tert-butyl 6-(5-hydroxy-4-(1H-1,2,3-triazol-1-yl)-1H-pyrazol-1-yl)nicotinate (IOX4)
分子名称: Egl nine homolog 1, GLYCEROL, MANGANESE (II) ION, ...
著者Figg Jr, W.D, McDonough, M.A, Nakashima, Y, Schofield, C.J.
登録日2020-06-08
公開日2021-04-07
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Structural Basis of Prolyl Hydroxylase Domain Inhibition by Molidustat.
Chemmedchem, 16, 2021
7FFG
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Diarylpentanoid-producing polyketide synthase (N199F mutant)
分子名称: Type III polyketide synthase
著者Morita, H, Wong, C.P, Liu, Q, Kodama, T, Lee, Y, Nakashima, Y.
登録日2021-07-23
公開日2022-01-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Identification of a diarylpentanoid-producing polyketide synthase revealing an unusual biosynthetic pathway of 2-(2-phenylethyl)chromones in agarwood.
Nat Commun, 13, 2022
7FFA
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Diarylpentanoid-producing polyketide synthase from Aquilaria sinensis
分子名称: Type III polyketide synthase
著者Morita, H, Wong, C.P, Liu, Q, Kodama, T, Lee, Y, Nakashima, Y.
登録日2021-07-23
公開日2022-01-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Identification of a diarylpentanoid-producing polyketide synthase revealing an unusual biosynthetic pathway of 2-(2-phenylethyl)chromones in agarwood.
Nat Commun, 13, 2022
7FFI
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BU of 7ffi by Molmil
Diarylpentanoid-producing polyketide synthase (F340W mutant)
分子名称: Type III polyketide synthase
著者Morita, H, Wong, C.P, Liu, Q, Kodama, T, Lee, Y, Nakashima, Y.
登録日2021-07-23
公開日2022-01-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Identification of a diarylpentanoid-producing polyketide synthase revealing an unusual biosynthetic pathway of 2-(2-phenylethyl)chromones in agarwood.
Nat Commun, 13, 2022
7FFC
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BU of 7ffc by Molmil
Diarylpentanoid-producing polyketide synthase (A210E mutant)
分子名称: GLYCEROL, Type III polyketide synthase
著者Morita, H, Wong, C.P, Liu, Q, Kodama, T, Lee, Y, Nakashima, Y.
登録日2021-07-23
公開日2022-01-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献Identification of a diarylpentanoid-producing polyketide synthase revealing an unusual biosynthetic pathway of 2-(2-phenylethyl)chromones in agarwood.
Nat Commun, 13, 2022
7FFH
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BU of 7ffh by Molmil
Diarylpentanoid-producing polyketide synthase (N199L mutant)
分子名称: Type III polyketide synthase
著者Morita, H, Wong, C.P, Liu, Q, Takeshi, K, Lee, Y, Nakashima, Y.
登録日2021-07-23
公開日2022-01-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Identification of a diarylpentanoid-producing polyketide synthase revealing an unusual biosynthetic pathway of 2-(2-phenylethyl)chromones in agarwood.
Nat Commun, 13, 2022
1V29
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BU of 1v29 by Molmil
Crystal structure of Nitrile hydratase from a thermophile Bacillus smithii
分子名称: COBALT (II) ION, nitrile hydratase a chain, nitrile hydratase b chain
著者Hourai, S, Miki, M, Takashima, Y, Mitsuda, S, Yanagi, K.
登録日2003-10-09
公開日2004-10-09
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of nitrile hydratase from a thermophilic Bacillus smithii
Biochem.Biophys.Res.Commun., 312, 2003
5YK9
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BU of 5yk9 by Molmil
Crystal structure of selenomethionine-labelled indole prenyltransferase AmbP1
分子名称: AmbP1
著者Awakawa, T, Nakashima, Y, Liu, X, Abe, I.
登録日2017-10-12
公開日2018-06-06
最終更新日2018-06-13
実験手法X-RAY DIFFRACTION (3.001 Å)
主引用文献Molecular Insight into the Mg2+-Dependent Allosteric Control of Indole Prenylation by Aromatic Prenyltransferase AmbP1
Angew. Chem. Int. Ed. Engl., 57, 2018
5Y4G
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BU of 5y4g by Molmil
Apo Structure of AmbP3
分子名称: AmbP3
著者Wong, C.P, Awakawa, T, Nakashima, Y.
登録日2017-08-03
公開日2018-07-18
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Two Distinct Substrate Binding Modes for the Normal and Reverse Prenylation of Hapalindoles by the Prenyltransferase AmbP3
Angew. Chem. Int. Ed. Engl., 57, 2018
5Y72
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BU of 5y72 by Molmil
DMSPP Bound AmbP3
分子名称: AmbP3, DIMETHYLALLYL S-THIOLODIPHOSPHATE
著者Wong, C.P, Awakawa, T, Nakashima, Y.
登録日2017-08-16
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Two Distinct Substrate Binding Modes for the Normal and Reverse Prenylation of Hapalindoles by the Prenyltransferase AmbP3
Angew. Chem. Int. Ed. Engl., 57, 2018
5Y84
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Hapalindole U and DMSPP Bound AmbP3
分子名称: AmbP3, DIMETHYLALLYL S-THIOLODIPHOSPHATE, Hapalindole U
著者Wong, C.P, Awakawa, T, Nakashima, Y.
登録日2017-08-18
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Two Distinct Substrate Binding Modes for the Normal and Reverse Prenylation of Hapalindoles by the Prenyltransferase AmbP3
Angew. Chem. Int. Ed. Engl., 57, 2018
5Y7C
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Hapalindole A and DMSPP Bound AmbP3
分子名称: AmbP3, DIMETHYLALLYL S-THIOLODIPHOSPHATE, Hapalindole A
著者Wong, C.P, Awakawa, T, Nakashima, Y.
登録日2017-08-16
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.003 Å)
主引用文献Two Distinct Substrate Binding Modes for the Normal and Reverse Prenylation of Hapalindoles by the Prenyltransferase AmbP3
Angew. Chem. Int. Ed. Engl., 57, 2018
5Z43
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BU of 5z43 by Molmil
Crystal structure of prenyltransferase AmbP1 apo structure
分子名称: AmbP1, MAGNESIUM ION
著者Awakawa, T, Nakashima, Y, Mori, T, Abe, I.
登録日2018-01-10
公開日2018-06-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.361 Å)
主引用文献Molecular Insight into the Mg2+-Dependent Allosteric Control of Indole Prenylation by Aromatic Prenyltransferase AmbP1
Angew. Chem. Int. Ed. Engl., 57, 2018
5Z45
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BU of 5z45 by Molmil
Crystal structure of prenyltransferase AmbP1 pH6.5 complexed with GSPP and cis-indolyl vinyl isonitrile
分子名称: 3-[(Z)-2-isocyanoethenyl]-1H-indole, AmbP1, GERANYL S-THIOLODIPHOSPHATE, ...
著者Awakawa, T, Nakashima, Y, Mori, T, Abe, I.
登録日2018-01-10
公開日2018-06-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.601 Å)
主引用文献Molecular Insight into the Mg2+-Dependent Allosteric Control of Indole Prenylation by Aromatic Prenyltransferase AmbP1
Angew. Chem. Int. Ed. Engl., 57, 2018
5Z44
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Crystal structure of prenyltransferase AmbP1 complexed with GSPP
分子名称: AmbP1, GERANYL S-THIOLODIPHOSPHATE, MAGNESIUM ION
著者Awakawa, T, Nakashima, Y, Mori, T, Abe, I.
登録日2018-01-10
公開日2018-06-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.458 Å)
主引用文献Molecular Insight into the Mg2+-Dependent Allosteric Control of Indole Prenylation by Aromatic Prenyltransferase AmbP1
Angew. Chem. Int. Ed. Engl., 57, 2018
5Z46
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BU of 5z46 by Molmil
Crystal structure of prenyltransferase AmbP1 pH8 complexed with GSPP and cis-indolyl vinyl isonitrile
分子名称: 3-[(Z)-2-isocyanoethenyl]-1H-indole, AmbP1, GERANYL S-THIOLODIPHOSPHATE, ...
著者Awakawa, T, Nakashima, Y, Mori, T, Abe, I.
登録日2018-01-10
公開日2018-06-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.999 Å)
主引用文献Molecular Insight into the Mg2+-Dependent Allosteric Control of Indole Prenylation by Aromatic Prenyltransferase AmbP1
Angew. Chem. Int. Ed. Engl., 57, 2018
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