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PDB: 28 件

3GS3
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Structure of the N-terminal HEAT Domain of Symplekin from D. melanogaster
分子名称: Symplekin
著者Kennedy, S.A, Redinbo, M.R.
登録日2009-03-26
公開日2009-07-14
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of the HEAT domain from the Pre-mRNA processing factor Symplekin.
J.Mol.Biol., 392, 2009
2O83
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The Structure of Tandem GA RNA Pairs When Flanking Pairs are isoG-isoC Pairs
分子名称: 5'-R(*GP*GP*(IC)P*GP*AP*(IG)P*CP*CP*A)-3'
著者Kennedy, S.D, Turner, D.H.
登録日2006-12-11
公開日2007-07-10
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Stacking Effects on Local Structure in RNA: Changes in the Structure of Tandem GA Pairs when Flanking GC Pairs are Replaced by isoG-isoC Pairs
J.Phys.Chem.B, 111, 2007
2LX1
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Major Conformation of the Internal Loop 5'GAGU/3'UGAG
分子名称: RNA (5'-R(*GP*AP*CP*GP*AP*GP*UP*GP*UP*CP*A)-3')
著者Kennedy, S.D, Turner, D.H.
登録日2012-08-12
公開日2012-11-21
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Novel conformation of an RNA structural switch.
Biochemistry, 51, 2012
4YND
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The Discovery of A-893, A New Cell-Active Benzoxazinone Inhibitor of Lysine Methyltransferase SMYD2
分子名称: N-cyclohexyl-N~3~-[2-(3,4-dichlorophenyl)ethyl]-N-(2-{[(2R)-2-hydroxy-2-(3-oxo-3,4-dihydro-2H-1,4-benzoxazin-8-yl)ethyl]amino}ethyl)-beta-alaninamide, N-lysine methyltransferase SMYD2, S-ADENOSYLMETHIONINE, ...
著者Sweis, R.F, Wang, Z, Algire, M, Arrowsmith, C.H, Brown, P.J, Chiang, G.C, Guo, J, Jakob, C.G, Kennedy, S, Li, F, Soni, N.B, Vedadi, M, Pappano, W.N.
登録日2015-03-09
公開日2015-05-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Discovery of A-893, A New Cell-Active Benzoxazinone Inhibitor of Lysine Methyltransferase SMYD2.
Acs Med.Chem.Lett., 6, 2015
4RYL
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Human Protein Arginine Methyltransferase 3 in complex with 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea
分子名称: 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea, PRMT3 protein, UNKNOWN ATOM OR ION
著者Dong, A, Dobrovetsky, E, Kaniskan, H.U, Szewczyk, M, Yu, Z, Eram, M.S, Yang, X, Schmidt, K, Luo, X, Dai, M, He, F, Zang, I, Lin, Y, Kennedy, S, Li, F, Tempel, W, Smil, D, Min, S.J, Landon, M, Lin-Jones, J, Huang, X.P, Roth, B.L, Schapira, M, Atadja, P, Barsyte-Lovejoy, D, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Brown, P.J, Zhao, K, Jin, J, Vedadi, M, Structural Genomics Consortium (SGC)
登録日2014-12-15
公開日2015-02-25
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献A Potent, Selective and Cell-Active Allosteric Inhibitor of Protein Arginine Methyltransferase 3 (PRMT3).
Angew.Chem.Int.Ed.Engl., 54, 2015
6AU2
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Crystal structure of SETDB1 Tudor domain with aryl triazole fragments
分子名称: 1,2-ETHANEDIOL, 1-methyl-4H,6H-[1,2,4]triazolo[4,3-a][4,1]benzoxazepine, BETA-MERCAPTOETHANOL, ...
著者MADER, P, Mendoza-Sanchez, R, IQBAL, A, DONG, A, DOBROVETSKY, E, CORLESS, V.B, LIEW, S.K, TEMPEL, W, SMIL, D, DELA SENA, C.C, KENNEDY, S, DIAZ, D, HOLOWNIA, A, VEDADI, M, BROWN, P.J, SANTHAKUMAR, V, Bountra, C, Edwards, A.M, YUDIN, A.K, Arrowsmith, C.H, Structural Genomics Consortium (SGC)
登録日2017-08-30
公開日2017-10-11
最終更新日2019-10-16
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Identification and characterization of the first fragment hits for SETDB1 Tudor domain.
Bioorg.Med.Chem., 27, 2019
6BPI
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BU of 6bpi by Molmil
Crystal structure of SETDB1 Tudor domain with aryl triazole fragment peptide conjugates
分子名称: 1,2-ETHANEDIOL, Histone-lysine N-methyltransferase SETDB1, MLY-SER-THR-E2G, ...
著者MADER, P, Mendoza-Sanchez, R, DONG, A, DOBROVETSKY, E, IQBAL, A, CORLESS, V, TEMPEL, W, LIEW, S.K, SMIL, D, DELA SENA, C.C, KENNEDY, S, DIAZ, D.B, SCHAPIRA, M, VEDADI, M, BROWN, P.J, Santhakumar, V, FRYE, S, Bountra, C, Edwards, A.M, YUDIN, A.K, Arrowsmith, C.H, Structural Genomics Consortium (SGC)
登録日2017-11-23
公開日2017-12-27
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Crystal structure of SETDB1 Tudor domain with aryl triazole fragment peptide conjugates
to be published
3FLD
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BU of 3fld by Molmil
Crystal structure of the trai c-terminal domain
分子名称: Protein traI, SULFATE ION
著者Guogas, L.M, Kennedy, S.A, Redinbo, M.R.
登録日2008-12-18
公開日2009-02-10
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献A novel fold in the TraI relaxase-helicase c-terminal domain is essential for conjugative DNA transfer.
J.Mol.Biol., 386, 2009
6N8H
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RNA Duplex containing the internal loop 5'-GCAU/3'-UACG
分子名称: RNA (5'-R(*CP*GP*GP*GP*CP*AP*UP*CP*CP*G)-3')
著者Berger, K.D, Kennedy, S.D, Turner, D.H.
登録日2018-11-29
公開日2019-02-13
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry, 58, 2019
6N8I
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RNA Duplex containing the internal loop 5'-UUCG/3'-GCUU
分子名称: RNA (5'-R(*CP*GP*CP*AP*UP*UP*CP*GP*AP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*UP*UP*CP*GP*UP*GP*CP*G)-3')
著者Berger, K.D, Kennedy, S.D, Turner, D.H.
登録日2018-11-29
公開日2019-02-13
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry, 58, 2019
6N8F
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RNA Duplex containing the internal loop 5'-GCUU/3'-UUCG
分子名称: RNA (5'-R(*CP*GP*CP*AP*GP*CP*UP*UP*AP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*GP*CP*UP*UP*UP*GP*CP*G)-3')
著者Berger, K.D, Kennedy, S.D, Turner, D.H.
登録日2018-11-29
公開日2019-02-13
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry, 58, 2019
6AU3
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Crystal structure of SETDB1 Tudor domain with aryl triazole fragments
分子名称: 1,2-ETHANEDIOL, Histone-lysine N-methyltransferase SETDB1, N-{[2-(3,5-dimethyl-4H-1,2,4-triazol-4-yl)phenyl]methyl}acetamide, ...
著者MADER, P, Mendoza-Sanchez, R, IQBAL, A, DONG, A, DOBROVETSKY, E, CORLESS, V.B, LIEW, S.K, TEMPEL, W, SMIL, D, DELA SENA, C.C, KENNEDY, S, DIAZ, D, HOLOWNIA, A, VEDADI, M, BROWN, P.J, SANTHAKUMAR, V, Bountra, C, Edwards, A.M, YUDIN, A.K, Arrowsmith, C.H, Structural Genomics Consortium (SGC)
登録日2017-08-30
公開日2017-09-27
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of SETDB1 Tudor domain with aryl triazole fragments
to be published
1XV0
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Solution NMR structure of RNA internal loop with three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCGAAGCCG
分子名称: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P)-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3'
著者Chen, G, Znosko, B.M, Kennedy, S.D, Krugh, T.R, Turner, D.H.
登録日2004-10-26
公開日2004-11-09
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution Structure of an RNA Internal Loop with Three Consecutive Sheared GA Pairs
Biochemistry, 44, 2005
7RQ5
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Hairpin near 3'-Splice Site of Influenza A Segment 7 Bound to 5-nt Oligonucleotide
分子名称: RNA (5'-D(*(MU5)P*(MLC)P*(MRC))-R(P*(LG)P*(MU3))-3'), RNA (5'-R(*AP*UP*CP*CP*AP*GP*AP*AP*AP*CP*GP*GP*AP*UP*GP*GP*AP*UP*A)-3')
著者Kauffmann, A.D, Kennedy, S.D, Turner, D.H.
登録日2021-08-05
公開日2022-01-19
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Nuclear magnetic resonance reveals a two hairpin equilibrium near the 3'-splice site of influenza A segment 7 mRNA that can be shifted by oligonucleotides.
Rna, 28, 2022
2DD1
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Three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCAAAGCCG
分子名称: 5'-R(*GP*CP*CP*GP*AP*AP*AP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3'
著者Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
登録日2006-01-19
公開日2006-06-13
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
2DD3
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An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. The minor conformation with A6/A5/A16 stack
分子名称: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3'
著者Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
登録日2006-01-19
公開日2006-06-13
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
2DD2
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An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: I. The major conformation with A6/A15/A16 stack
分子名称: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3'
著者Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
登録日2006-01-19
公開日2006-06-13
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
1TUT
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J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns
分子名称: 5'-R(*GP*AP*GP*GP*AP*AP*GP*GP*CP*GP*A)-3', 5'-R(*UP*CP*GP*UP*UP*AP*AP*UP*CP*UP*C)-3'
著者Znosko, B.M, Kennedy, S.D, Wille, P.C, Krugh, T.R, Turner, D.H.
登録日2004-06-25
公開日2004-12-28
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural Features and Thermodynamics of the J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns.
Biochemistry, 43, 2004
2KY0
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The Structure of RNA Internal Loops with Tandem AG Pairs: 5'GAGC/3'CGAG
分子名称: 5'-R(*GP*AP*CP*GP*AP*GP*CP*GP*UP*CP*A)-3'
著者Hammond, N.B, Kennedy, S.D, Turner, D.H.
登録日2010-05-13
公開日2010-06-02
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献RNA internal loops with tandem AG pairs: the structure of the 5'GAGU/3'UGAG loop can be dramatically different from others, including 5'AAGU/3'UGAA.
Biochemistry, 49, 2010
2KY1
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The Structure of RNA Internal Loops with Tandem AG Pairs: 5'UAGA/3'AGAU
分子名称: 5'-R(*GP*AP*CP*UP*AP*GP*AP*GP*UP*CP*A)-3'
著者Hammond, N.B, Kennedy, S.D, Turner, D.H.
登録日2010-05-13
公開日2010-06-02
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献RNA internal loops with tandem AG pairs: the structure of the 5'GAGU/3'UGAG loop can be dramatically different from others, including 5'AAGU/3'UGAA.
Biochemistry, 49, 2010
2KY2
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The Structure of RNA Internal Loops with Tandem AG Pairs: 5'UAGG/3'GGAU
分子名称: 5'-R(*GP*GP*UP*AP*GP*GP*CP*CP*A)-3'
著者Hammond, N.B, Kennedy, S.D, Turner, D.H.
登録日2010-05-13
公開日2010-06-02
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献RNA internal loops with tandem AG pairs: the structure of the 5'GAGU/3'UGAG loop can be dramatically different from others, including 5'AAGU/3'UGAA.
Biochemistry, 49, 2010
2KXZ
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The Structure of RNA Internal Loops with Tandem AG Pairs: 5'AAGU/3'UGAA
分子名称: 5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3'
著者Hammond, N.B, Kennedy, S.D, Turner, D.H.
登録日2010-05-13
公開日2010-06-02
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献RNA internal loops with tandem AG pairs: the structure of the 5'GAGU/3'UGAG loop can be dramatically different from others, including 5'AAGU/3'UGAA.
Biochemistry, 49, 2010
2KQ6
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The structure of the EF-hand domain of polycystin-2 suggests a mechanism for Ca2+-dependent regulation of polycystin-2 channel activity
分子名称: Polycystin-2
著者Petri, E.T, Celic, A, Kennedy, S.D, Ehrlich, B.E, Boggon, T.J, Hodsdon, M.E.
登録日2009-10-28
公開日2010-05-12
最終更新日2024-05-08
実験手法SOLUTION NMR
主引用文献Structure of the EF-hand domain of polycystin-2 suggests a mechanism for Ca2+-dependent regulation of polycystin-2 channel activity.
Proc.Natl.Acad.Sci.USA, 107, 2010
5V2R
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Structure of a GA Rich 8x8 Nucleotide RNA Internal Loop
分子名称: RNA (5'-R(*CP*CP*AP*GP*AP*AP*AP*CP*GP*GP*AP*UP*GP*GP*A)-3')
著者Kauffmann, A.D, Kennedy, S.D, Turner, D.H.
登録日2017-03-06
公開日2017-07-26
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Nuclear Magnetic Resonance Structure of an 8 8 Nucleotide RNA Internal Loop Flanked on Each Side by Three Watson-Crick Pairs and Comparison to Three-Dimensional Predictions.
Biochemistry, 56, 2017
2L8F
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Structure of a 4X4 Nucleotide RNA Internal Loop from an R2 Retrotransposon
分子名称: RNA (5'-R(*CP*GP*GP*AP*GP*GP*AP*CP*AP*CP*U)-3'), RNA (5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3')
著者Lerman, Y, Kennedy, S.D, Turner, D.H.
登録日2011-01-11
公開日2011-08-31
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: Identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions.
Rna, 17, 2011

 

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