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PDB: 3272 results

6ZSP
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Human serine racemase bound to ATP and malonate.
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, ...
Authors:Koulouris, C.R, Bax, B.D, Roe, S.M, Atack, J.R.
Deposit date:2020-07-16
Release date:2021-03-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Tyrosine 121 moves revealing a ligandable pocket that couples catalysis to ATP-binding in serine racemase.
Commun Biol, 5, 2022
5KE2
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BU of 5ke2 by Molmil
Crystal structure of SETDB1 Tudor domain in complex with inhibitor XST06472A
Descriptor: (3~{S})-~{N}-~{tert}-butyl-1,2,3,4-tetrahydroisoquinoline-3-carboxamide, 1,2-ETHANEDIOL, Histone-lysine N-methyltransferase SETDB1, ...
Authors:Dong, A, Iqbal, A, Mader, P, Dobrovetsky, E, Walker, J.R, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Brown, P.J, Structural Genomics Consortium (SGC)
Deposit date:2016-06-09
Release date:2016-07-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Crystal structure of SETDB1 Tudor domain in complex with inhibitor xst06472a
to be published
5KGQ
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BU of 5kgq by Molmil
NMR structure and dynamics of Q4DY78, a conserved kinetoplasid-specific protein from Trypanosoma cruzi
Descriptor: Uncharacterized protein
Authors:D'Andrea, E.D, Retel, J.S, Diehl, A, Schmieder, P, Oschkinat, H, Pires, J.R.
Deposit date:2016-06-13
Release date:2017-07-05
Last modified:2024-06-12
Method:SOLUTION NMR
Cite:NMR structure and dynamics of Q4DY78, a conserved kinetoplasid-specific protein from Trypanosoma cruzi.
J.Struct.Biol., 213, 2021
5KO5
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BU of 5ko5 by Molmil
Crystal Structure of Isoform 2 of Purine Nucleoside Phosphorylase from Schistosoma mansoni in complex with cytosine
Descriptor: 1,2-ETHANEDIOL, 6-AMINOPYRIMIDIN-2(1H)-ONE, Purine nucleoside phosphorylase
Authors:Torini, J.R, Romanello, L, Bird, L, Owens, R, Brandao-Neto, J, Pereira, H.M.
Deposit date:2016-06-29
Release date:2017-08-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:The molecular structure of Schistosoma mansoni PNP isoform 2 provides insights into the nucleoside selectivity of PNPs.
PLoS ONE, 13, 2018
5KO4
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Bromodomain from Trypanosoma brucei Tb427.10.8150
Descriptor: Putative uncharacterized protein, SULFATE ION
Authors:El Bakkouri, M, Walker, J.R, Hou, C.F.D, Lin, Y.H, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Hui, R, Structural Genomics Consortium (SGC)
Deposit date:2016-06-29
Release date:2016-08-31
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Bromodomain from Trypanosoma brucei Tb427.10.8150
To be published
5KO6
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Crystal Structure of Isoform 2 of Purine Nucleoside Phosphorylase from Schistosoma mansoni in complex with cytosine and ribose-1-phosphate
Descriptor: 1-O-phosphono-alpha-D-ribofuranose, 6-AMINOPYRIMIDIN-2(1H)-ONE, Purine nucleoside phosphorylase
Authors:Torini, J.R, Romanello, L, Bird, L, Owens, R, Brandao-Neto, J, Pereira, H.M.
Deposit date:2016-06-29
Release date:2017-08-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:The molecular structure of Schistosoma mansoni PNP isoform 2 provides insights into the nucleoside selectivity of PNPs.
PLoS ONE, 13, 2018
5L03
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BU of 5l03 by Molmil
Crystal structure of 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE Synthase from BURKHOLDERIA PSEUDOMALLEI bound to L-tryptophan hydroxamate
Descriptor: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, N-hydroxy-L-tryptophanamide, ZINC ION
Authors:Blain, J.M, Ghose, D, Gorman, J.L, Goshu, G.M, Ranieri, G, Zhao, L, Bode, B, Meganathan, R, Walter, R.L, Hagen, T.J, Horn, J.R.
Deposit date:2016-07-26
Release date:2017-11-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.469 Å)
Cite:Synthesis and Characterization of the Burkholderia pseudomallei IspF Inhibitor L-tryptophan hydroxamate
To Be Published
5L3I
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BU of 5l3i by Molmil
Re-refinement of 4dd6; cisplatin coordination chemistry determination at hen egg white lysozyme His15
Descriptor: AMMONIA, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Helliwell, J.R.
Deposit date:2016-05-06
Release date:2016-06-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Cisplatin coordination chemistry determination at hen egg white lysozyme His15 with ligand distances and angles, and their standard uncertainties, and also reporting a split occupancy effect
ArXiv, 2016
5M0Z
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BU of 5m0z by Molmil
Cyclohexanone Monooxygenase from T. municipale: reduced enzyme bound to NADP+
Descriptor: Cyclohexanone Monooxygenase from Thermocrispum municipale., FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Gomez-Castellanos, J.R, Mattevi, A.
Deposit date:2016-10-06
Release date:2016-12-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Characterization and Crystal Structure of a Robust Cyclohexanone Monooxygenase.
Angew. Chem. Int. Ed. Engl., 55, 2016
5M1Y
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The case of 1lkr held at the PDB and its variable amino acid occupancies; re refinement of 4ow9 to correct this
Descriptor: CHLORIDE ION, DIMETHYL SULFOXIDE, IODIDE ION, ...
Authors:Helliwell, J.R.
Deposit date:2016-10-11
Release date:2016-10-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.904 Å)
Cite:The case of 1lkr held at the PDB and its variable amino acid occupancies; re refinement of 4ow9 to correct this
Zenodo, 2016
5M10
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BU of 5m10 by Molmil
Crystal structure of cyclohexanone monooxygenase from Thermocrispum municipale in the oxidised state with a bound nicotinamide.
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Cyclohexanone Monooxygenase from Thermocrispum municipale, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Gomez-Castellanos, J.R, Mattevi, A.
Deposit date:2016-10-06
Release date:2016-12-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Characterization and Crystal Structure of a Robust Cyclohexanone Monooxygenase.
Angew. Chem. Int. Ed. Engl., 55, 2016
7F9O
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BU of 7f9o by Molmil
PSI-NDH supercomplex of Barley
Descriptor: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ...
Authors:Wang, W.D, Shen, L, Tang, K, Han, G.Y, Shen, J.R, Zhang, X.
Deposit date:2021-07-04
Release date:2021-12-22
Last modified:2022-02-09
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Architecture of the chloroplast PSI-NDH supercomplex in Hordeum vulgare.
Nature, 601, 2022
7EW6
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BU of 7ew6 by Molmil
Barley photosystem I-LHCI-Lhca5 supercomplex
Descriptor: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Wang, W.D, Shen, L, Tang, K, Han, G.Y, Zhang, X, Shen, J.R.
Deposit date:2021-05-24
Release date:2021-12-22
Last modified:2022-02-09
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Architecture of the chloroplast PSI-NDH supercomplex in Hordeum vulgare.
Nature, 601, 2022
6QX3
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BU of 6qx3 by Molmil
Influenza A virus (A/NT/60/1968) polymerase Hetermotrimer in complex with 3'5' cRNA promoter and Nb8205
Descriptor: Nb8205, Polymerase acidic protein, Polymerase basic protein 2, ...
Authors:Carrique, L, Keown, J.R, Fan, H, Fodor, E, Grimes, J.M.
Deposit date:2019-03-07
Release date:2019-09-04
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.79 Å)
Cite:Structures of influenza A virus RNA polymerase offer insight into viral genome replication.
Nature, 573, 2019
6RO3
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BU of 6ro3 by Molmil
2Yr-X: Lysozyme with Re Cluster 2 year on shelf
Descriptor: ACETATE ION, BROMIDE ION, CHLORIDE ION, ...
Authors:Brink, A, Helliwell, J.R.
Deposit date:2019-05-10
Release date:2019-06-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Formation of a highly dense tetra-rhenium cluster in a protein crystal and its implications in medical imaging.
Iucrj, 6, 2019
6RO5
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BU of 6ro5 by Molmil
1Yr-Y: Lysozyme with Re Cluster 1 year on shelf
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Brink, A, Helliwell, J.R.
Deposit date:2019-05-10
Release date:2019-06-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Formation of a highly dense tetra-rhenium cluster in a protein crystal and its implications in medical imaging.
Iucrj, 6, 2019
6S5V
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BU of 6s5v by Molmil
Crystal structure of the Cap-Midlink region of the H5N1 Influenza A virus polymerase in complex with a Cap-domain binding analogue
Descriptor: (1~{S},2~{S},3~{S},6~{R})-2-[[2-[5,7-bis(fluoranyl)-1~{H}-indol-3-yl]-5-fluoranyl-pyrimidin-4-yl]amino]-3,6-dimethyl-cyclohexane-1-carboxylic acid, GLYCEROL, POTASSIUM ION, ...
Authors:Keown, J.R, Fodor, E, Grimes, J.M.
Deposit date:2019-07-02
Release date:2019-11-06
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Design, Synthesis, and Biological Evaluation of Novel Indoles Targeting the Influenza PB2 Cap Binding Region.
J.Med.Chem., 62, 2019
6S5Z
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BU of 6s5z by Molmil
Structure of Rib R28N from Streptococcus pyogenes
Descriptor: SODIUM ION, Surface protein R28
Authors:Whelan, F, Griffiths, S.C, Whittingham, J.L, Bateman, A, Potts, J.R.
Deposit date:2019-07-02
Release date:2019-12-11
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection.
Proc.Natl.Acad.Sci.USA, 116, 2019
6RR7
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BU of 6rr7 by Molmil
Influenza A virus (A/NT/60/1968) polymerase Heterotrimer bound to 3'5' vRNA promoter and capped RNA primer
Descriptor: Polymerase acidic protein, Polymerase basic protein 2, RNA (5'-D(*(M7G))-R(P*AP*AP*UP*CP*U)-3'), ...
Authors:Carrique, L, Keown, J.R, Fan, H, Fodor, E, Grimes, J.M.
Deposit date:2019-05-17
Release date:2019-09-04
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Structures of influenza A virus RNA polymerase offer insight into viral genome replication.
Nature, 573, 2019
6S5W
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BU of 6s5w by Molmil
Structure of Rib domain 'Rib Long' from Lactobacillus acidophilus
Descriptor: SODIUM ION, SULFATE ION, Surface protein
Authors:Griffiths, S.C, Cooper, R.E.M, Whelan, F, Whittingham, J.L, Bateman, A, Potts, J.R.
Deposit date:2019-07-02
Release date:2019-12-11
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection.
Proc.Natl.Acad.Sci.USA, 116, 2019
6SDB
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BU of 6sdb by Molmil
Chimeric titin Z1Z2 functionalized with a KLER exogenous peptide from decorin
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, PHOSPHATE ION, ...
Authors:Fleming, J.R, Hill, C, Mayans, O.M.
Deposit date:2019-07-26
Release date:2019-09-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The ZT Biopolymer: A Self-Assembling Protein Scaffold for Stem Cell Applications.
Int J Mol Sci, 20, 2019
6SHG
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BU of 6shg by Molmil
Diffraction data for RoAb13 crystal co-crystallised with PIYDIN and its RoAb13 structure
Descriptor: Antibody RoAb13 Heavy Chain, Antibody RoAb13 Light Chain
Authors:Saridakis, E, Helliwell, J.R, Govada, L, Chain, B, Morgan, M, Kassen, S.C, Chayen, N.E.
Deposit date:2019-08-06
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.35050821 Å)
Cite:X-ray crystallography based model of the antibody RoAb13 bound to peptidomimetics of the HIV receptor chemokine receptor CCR5
To Be Published
6SE1
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BU of 6se1 by Molmil
Structure of Salmonella ser. Paratyphi A lipopolysaccharide acetyltransferase periplasmic domain
Descriptor: DI(HYDROXYETHYL)ETHER, Putative lipopolysaccharide modification acyltransferase, SULFATE ION
Authors:Tindall, S.N, Pearson, C, Herman, R, Jenkins, H.T, Thomas, G.H, Potts, J.R, Van der Woude, M.
Deposit date:2019-07-29
Release date:2020-08-26
Last modified:2020-09-16
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Acetylation of Surface Carbohydrates in Bacterial Pathogens Requires Coordinated Action of a Two-Domain Membrane-Bound Acyltransferase.
Mbio, 11, 2020
6SX1
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BU of 6sx1 by Molmil
Structure of Rib Standard, a Rib domain from Lactobacillus acidophilus
Descriptor: Surface protein
Authors:Cooper, R.E.M, Griffiths, S.C, Turkenburg, J.P, Bateman, A, Potts, J.R.
Deposit date:2019-09-24
Release date:2019-12-18
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection.
Proc.Natl.Acad.Sci.USA, 116, 2019
6S5X
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BU of 6s5x by Molmil
Structure of RibR, the most N-terminal Rib domain from Group B Streptococcus species Streptococcus agalactiae
Descriptor: Group B streptococcal R4 surface protein, SODIUM ION
Authors:Whelan, F, Turkenburg, J.P, Griffiths, S.C, Bateman, A, Potts, J.R.
Deposit date:2019-07-02
Release date:2019-12-11
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection.
Proc.Natl.Acad.Sci.USA, 116, 2019

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