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PDB: 3275 results

8GUD
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Cryo-EM structure of cancer-specific PI3Kalpha mutant E545K in complex with BYL-719
Descriptor: (2S)-N~1~-{4-methyl-5-[2-(1,1,1-trifluoro-2-methylpropan-2-yl)pyridin-4-yl]-1,3-thiazol-2-yl}pyrrolidine-1,2-dicarboxamide, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Liu, X, Zhou, Q, Hart, J.R, Xu, Y, Yang, S, Yang, D, Vogt, P.K, Wang, M.-W.
Deposit date:2022-09-11
Release date:2022-11-23
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.62 Å)
Cite:Cryo-EM structures of cancer-specific helical and kinase domain mutations of PI3K alpha.
Proc.Natl.Acad.Sci.USA, 119, 2022
8GUB
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Cryo-EM structure of cancer-specific PI3Kalpha mutant H1047R in complex with BYL-719
Descriptor: (2S)-N~1~-{4-methyl-5-[2-(1,1,1-trifluoro-2-methylpropan-2-yl)pyridin-4-yl]-1,3-thiazol-2-yl}pyrrolidine-1,2-dicarboxamide, Phosphatidylinositol 3-kinase regulatory subunit alpha, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Liu, X, Zhou, Q, Hart, J.R, Xu, Y, Yang, S, Yang, D, Vogt, P.K, Wang, M.-W.
Deposit date:2022-09-11
Release date:2022-11-23
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Cryo-EM structures of cancer-specific helical and kinase domain mutations of PI3K alpha.
Proc.Natl.Acad.Sci.USA, 119, 2022
8GUA
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Cryo-EM structure of cancer-specific PI3Kalpha mutant E542K in complex with BYL-719
Descriptor: (2S)-N~1~-{4-methyl-5-[2-(1,1,1-trifluoro-2-methylpropan-2-yl)pyridin-4-yl]-1,3-thiazol-2-yl}pyrrolidine-1,2-dicarboxamide, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Liu, X, Zhou, Q, Hart, J.R, Xu, Y, Yang, S, Yang, D, Vogt, P.K, Wang, M.-W.
Deposit date:2022-09-11
Release date:2022-12-07
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:Cryo-EM structures of cancer-specific helical and kinase domain mutations of PI3K alpha.
Proc.Natl.Acad.Sci.USA, 119, 2022
2XTH
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BU of 2xth by Molmil
K2PtBr6 binding to lysozyme
Descriptor: HEXABROMOPLATINATE(IV), LYSOZYME C
Authors:Helliwell, J.R, Bell, A.M.T, Bryant, P, Fisher, S, Habash, J, Helliwell, M, Margiolaki, I, Kaenket, S, Watier, Y, Wright, J, Yalamanchili, S.K.
Deposit date:2010-10-07
Release date:2010-12-08
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Time-Dependent Analysis of K2Ptbr6 Binding to Lysozyme Studied by Protein Powder and Single Crystal X-Ray Analysis
Z.Kristallogr., 225, 2010
8UVL
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Crystal structure of selective IRE1a inhibitor 29 at the enzyme active site
Descriptor: 1,2-ETHANEDIOL, 1-phenyl-N-(2,3,6-trifluoro-4-{[(3M)-3-(2-{[(3R,5R)-5-fluoropiperidin-3-yl]amino}pyrimidin-4-yl)pyridin-2-yl]oxy}phenyl)methanesulfonamide, Serine/threonine-protein kinase/endoribonuclease IRE1
Authors:Kiefer, J.R, Wallweber, H.A, Braun, M.-G, Wei, W, Jiang, F, Wang, W, Rudolph, J, Ashkenazi, A.
Deposit date:2023-11-03
Release date:2024-05-29
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Discovery of Potent, Selective, and Orally Available IRE1 alpha Inhibitors Demonstrating Comparable PD Modulation to IRE1 Knockdown in a Multiple Myeloma Model.
J.Med.Chem., 67, 2024
8FW4
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Crystal structure of the adenosylcobalamin riboswitch holo conformation in absence of ligand
Descriptor: MAGNESIUM ION, RNA (210-MER)
Authors:Stagno, J.R, Wang, Y.-X.
Deposit date:2023-01-20
Release date:2023-07-26
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (4.3 Å)
Cite:Crystal structure of cobalamin ribositch in holo conformation without ligand
Nucleic Acids Res., 2023
8G7X
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Human fatty acid synthase dehydratase domain
Descriptor: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, ACETATE ION, DIMETHYL SULFOXIDE, ...
Authors:Akey, D.L, Konwerski, J.R, McCullough, T.M, Smith, J.L.
Deposit date:2023-02-17
Release date:2023-06-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.815 Å)
Cite:Structure of a modular polyketide synthase reducing region.
Structure, 31, 2023
8DQ0
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Quorum-sensing receptor RhlR bound to PqsE
Descriptor: 2-aminobenzoylacetyl-CoA thioesterase, 4-(3-bromophenoxy)-N-[(3S)-2-oxothiolan-3-yl]butanamide, RhlR protein
Authors:Paczkowski, J.E, Fromme, J.C, Feathers, J.R.
Deposit date:2022-07-18
Release date:2022-12-07
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Structure of the RhlR-PqsE complex from Pseudomonas aeruginosa reveals mechanistic insights into quorum-sensing gene regulation.
Structure, 30, 2022
8DQ1
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Quorum-sensing receptor RhlR bound to PqsE
Descriptor: 2-aminobenzoylacetyl-CoA thioesterase, 4-(3-bromophenoxy)-N-[(3S)-2-oxothiolan-3-yl]butanamide, DNA (5'-D(*AP*CP*CP*TP*GP*CP*CP*AP*GP*AP*CP*TP*GP*CP*AP*CP*AP*G)-3'), ...
Authors:Paczkowski, J.E, Fromme, J.C, Feathers, J.R.
Deposit date:2022-07-18
Release date:2022-12-07
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structure of the RhlR-PqsE complex from Pseudomonas aeruginosa reveals mechanistic insights into quorum-sensing gene regulation.
Structure, 30, 2022
8EEB
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Cryo-EM structure of human ABCA7 in Digitonin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Phospholipid-transporting ATPase ABCA7, ...
Authors:Alam, A, Le, L.T.M, Thompson, J.R.
Deposit date:2022-09-06
Release date:2022-12-21
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM structures of human ABCA7 provide insights into its phospholipid translocation mechanisms.
Embo J., 42, 2023
8EE6
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Cryo-EM Structure of human ABCA7 in PE/Ch nanodiscs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Phospholipid-transporting ATPase ABCA7, ...
Authors:Alam, A, Le, L.T.M, Thompson, J.R.
Deposit date:2022-09-06
Release date:2022-12-21
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo-EM structures of human ABCA7 provide insights into its phospholipid translocation mechanisms.
Embo J., 42, 2023
8EDW
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BU of 8edw by Molmil
Cryo-EM Structure of human ABCA7 in BPL/Ch Nanodiscs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Alam, A, Le, L.T.M, Thompson, J.R.
Deposit date:2022-09-06
Release date:2022-12-21
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structures of human ABCA7 provide insights into its phospholipid translocation mechanisms.
Embo J., 42, 2023
2XL2
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WDR5 IN COMPLEX WITH AN RBBP5 PEPTIDE RECRUITED TO NOVEL SITE
Descriptor: GLYCEROL, RETINOBLASTOMA-BINDING PROTEIN 5, WD REPEAT-CONTAINING PROTEIN 5
Authors:Odho, Z, Southall, S.M, Wilson, J.R.
Deposit date:2010-07-19
Release date:2010-08-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Characterisation of a Novel Wdr5 Binding Site that Recruits Rbbp5 Through a Conserved Motif and Enhances Methylation of H3K4 by Mll1.
J.Biol.Chem., 285, 2010
8G7L
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ATP-bound mtHsp60 V72I
Descriptor: 60 kDa heat shock protein, mitochondrial, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Braxton, J.R, Shao, H, Tse, E, Gestwicki, J.E, Southworth, D.R.
Deposit date:2023-02-16
Release date:2023-07-12
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Asymmetric apical domain states of mitochondrial Hsp60 coordinate substrate engagement and chaperonin assembly.
Biorxiv, 2023
8G7M
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ATP-bound mtHsp60 V72I focus
Descriptor: 60 kDa heat shock protein, mitochondrial, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Braxton, J.R, Shao, H, Tse, E, Gestwicki, J.E, Southworth, D.R.
Deposit date:2023-02-16
Release date:2023-07-12
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Asymmetric apical domain states of mitochondrial Hsp60 coordinate substrate engagement and chaperonin assembly.
Biorxiv, 2023
1NLS
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BU of 1nls by Molmil
CONCANAVALIN A AND ITS BOUND SOLVENT AT 0.94A RESOLUTION
Descriptor: CALCIUM ION, CONCANAVALIN A, MANGANESE (II) ION
Authors:Deacon, A.M, Gleichmann, T, Helliwell, J.R, Kalb(Gilboa), A.J.
Deposit date:1997-01-28
Release date:1997-11-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:The Structure of Concanavalin a and its Bound Solvent Determined with Small-Molecule Accuracy at 0.94 A Resolution
J.Chem.Soc.,Faraday Trans., 93, 1997
8E3D
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ZBTB7A Zinc Finger Domain Bound to DNA Duplex Containing CAST sequence (#11)
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*AP*TP*TP*TP*GP*GP*GP*GP*AP*GP*GP*GP*GP*TP*CP*TP*TP*TP*AP*AP*CP*C)-3'), DNA (5'-D(P*GP*GP*TP*AP*AP*AP*AP*GP*AP*CP*CP*CP*CP*TP*CP*CP*CP*CP*AP*AP*AP*T)-3'), ...
Authors:Horton, J.R, Ren, R, Cheng, X.
Deposit date:2022-08-17
Release date:2023-02-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Structural basis for transcription factor ZBTB7A recognition of DNA and effects of ZBTB7A somatic mutations that occur in human acute myeloid leukemia.
J.Biol.Chem., 299, 2023
8E3E
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BU of 8e3e by Molmil
ZBTB7A Zinc Finger Domain Bound to DNA Duplex Containing CAST sequence (#10)
Descriptor: DNA (5'-D(*CP*TP*TP*TP*GP*GP*GP*GP*AP*GP*GP*GP*GP*TP*CP*TP*TP*TP*TP*AP*C)-3'), DNA (5'-D(*GP*GP*TP*AP*AP*AP*AP*GP*AP*CP*CP*CP*CP*TP*CP*CP*CP*CP*AP*AP*A)-3'), ZINC ION, ...
Authors:Horton, J.R, Ren, R, Cheng, X.
Deposit date:2022-08-17
Release date:2023-02-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Structural basis for transcription factor ZBTB7A recognition of DNA and effects of ZBTB7A somatic mutations that occur in human acute myeloid leukemia.
J.Biol.Chem., 299, 2023
8EHX
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BU of 8ehx by Molmil
cryo-EM structure of TMEM63B in LMNG
Descriptor: CSC1-like protein 2
Authors:Zheng, W, Fu, T.M, Holt, J.R.
Deposit date:2022-09-14
Release date:2023-08-23
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:TMEM63 proteins function as monomeric high-threshold mechanosensitive ion channels.
Neuron, 111, 2023
8EHW
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BU of 8ehw by Molmil
cryo-EM structure of TMEM63A in nanodisc
Descriptor: CSC1-like protein 1
Authors:Zheng, W, Fu, T.M, Holt, J.R.
Deposit date:2022-09-14
Release date:2023-08-23
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:TMEM63 proteins function as monomeric high-threshold mechanosensitive ion channels.
Neuron, 111, 2023
8G7O
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BU of 8g7o by Molmil
ATP- and mtHsp10-bound mtHsp60 V72I focus
Descriptor: 10 kDa heat shock protein, mitochondrial, 60 kDa heat shock protein, ...
Authors:Braxton, J.R, Shao, H, Tse, E, Gestwicki, J.E, Southworth, D.R.
Deposit date:2023-02-16
Release date:2023-07-12
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Asymmetric apical domain states of mitochondrial Hsp60 coordinate substrate engagement and chaperonin assembly.
Biorxiv, 2023
8G7N
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BU of 8g7n by Molmil
ATP- and mtHsp10-bound mtHsp60 V72I
Descriptor: 10 kDa heat shock protein, mitochondrial, 60 kDa heat shock protein, ...
Authors:Braxton, J.R, Shao, H, Tse, E, Gestwicki, J.E, Southworth, D.R.
Deposit date:2023-02-16
Release date:2023-07-12
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Asymmetric apical domain states of mitochondrial Hsp60 coordinate substrate engagement and chaperonin assembly.
Biorxiv, 2023
8G7J
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BU of 8g7j by Molmil
mtHsp60 V72I apo
Descriptor: 60 kDa heat shock protein, mitochondrial
Authors:Braxton, J.R, Shao, H, Tse, E, Gestwicki, J.E, Southworth, D.R.
Deposit date:2023-02-16
Release date:2023-07-12
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Asymmetric apical domain states of mitochondrial Hsp60 coordinate substrate engagement and chaperonin assembly.
Biorxiv, 2023
8G7K
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BU of 8g7k by Molmil
mtHsp60 V72I apo focus
Descriptor: 60 kDa heat shock protein, mitochondrial
Authors:Braxton, J.R, Shao, H, Tse, E, Gestwicki, J.E, Southworth, D.R.
Deposit date:2023-02-16
Release date:2023-07-12
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Asymmetric apical domain states of mitochondrial Hsp60 coordinate substrate engagement and chaperonin assembly.
Biorxiv, 2023
8UOZ
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BU of 8uoz by Molmil
EmrE structure in the TPP-bound state (WT/E14Q heterodimer)
Descriptor: SMR family multidrug efflux protein EmrE, TETRAPHENYLPHOSPHONIUM
Authors:Li, J, Sae Her, A, Besch, A, Ramirez, B, Crames, M, Banigan, J.R, Mueller, C, Marsiglia, W.M, Zhang, Y, Traaseth, N.J.
Deposit date:2023-10-20
Release date:2024-05-29
Last modified:2024-07-03
Method:SOLID-STATE NMR, SOLUTION NMR
Cite:Dynamics underlie the drug recognition mechanism by the efflux transporter EmrE.
Nat Commun, 15, 2024

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PDB entries from 2024-08-07

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