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PDB: 3275 results

6QSF
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BU of 6qsf by Molmil
Crystal structure of Pizza6S in the presence of Keggin (STA)
Descriptor: Keggin (STA), Pizza6S
Authors:Noguchi, H, Vandebroek, L, Kamata, K, Tame, J.R.H, Van Meervelt, L, Parac-Vogt, T.N, Voet, A.R.D.
Deposit date:2019-02-20
Release date:2020-03-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry.
Chem.Commun.(Camb.), 56, 2020
6QSG
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BU of 6qsg by Molmil
Crystal structure of the hybrid bioinorganic complex of Pizza6S and Keggin (STA)
Descriptor: Keggin (STA), Pizza6S
Authors:Noguchi, H, Vandebroek, L, Kamata, K, Tame, J.R.H, Van Meervelt, L, Parac-Vogt, T.N, Voet, A.R.D.
Deposit date:2019-02-20
Release date:2020-03-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry.
Chem.Commun.(Camb.), 56, 2020
6QLF
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BU of 6qlf by Molmil
Structure of inner kinetochore CCAN complex with mask1
Descriptor: Inner kinetochore subunit AME1, Inner kinetochore subunit CHL4, Inner kinetochore subunit CTF19, ...
Authors:Yan, K, Yang, J, Zhang, Z, McLaughlin, S.H, Chang, L, Fasci, D, Heck, A.J.R, Barford, D.
Deposit date:2019-01-31
Release date:2019-10-02
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Structure of the inner kinetochore CCAN complex assembled onto a centromeric nucleosome.
Nature, 574, 2019
6Q92
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BU of 6q92 by Molmil
Crystal structure of human Arginase-1 at pH 7.0 in complex with ABH
Descriptor: 2(S)-AMINO-6-BORONOHEXANOIC ACID, Arginase-1, MANGANESE (II) ION, ...
Authors:Grobben, Y, Uitdehaag, J.C.M, Zaman, G.J.R.
Deposit date:2018-12-17
Release date:2019-12-11
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural insights into human Arginase-1 pH dependence and its inhibition by the small molecule inhibitor CB-1158.
J Struct Biol X, 4, 2020
6LF1
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BU of 6lf1 by Molmil
SeviL, a GM1b/asialo-GM1 binding lectin
Descriptor: CHLORIDE ION, SeviL
Authors:Kamata, K, Ozeki, Y, Park, S.-Y, Tame, J.R.H.
Deposit date:2019-11-28
Release date:2020-12-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata.
Sci Rep, 10, 2020
8A35
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BU of 8a35 by Molmil
NaK C-DI mutant with Rb+ and Na+
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Potassium channel protein, RUBIDIUM ION, ...
Authors:Minniberger, S, Plested, A.J.R.
Deposit date:2022-06-07
Release date:2023-02-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Asymmetry and Ion Selectivity Properties of Bacterial Channel NaK Mutants Derived from Ionotropic Glutamate Receptors.
J.Mol.Biol., 435, 2023
6LF2
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BU of 6lf2 by Molmil
SeviL bound to asialo-GM1 saccharide
Descriptor: SeviL, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Kamata, K, Ozeki, Y, Park, S.-Y, Tame, J.R.H.
Deposit date:2019-11-28
Release date:2020-12-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata.
Sci Rep, 10, 2020
6QLE
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BU of 6qle by Molmil
Structure of inner kinetochore CCAN complex
Descriptor: Central kinetochore subunit CTF3,Inner kinetochore subunit CTF3,Central kinetochore subunit CTF3,Inner kinetochore subunit CTF3, Central kinetochore subunit MCM16,Central kinetochore subunit MCM16,Inner kinetochore subunit MCM16,Mcm16p, Inner kinetochore subunit AME1,Inner kinetochore subunit AME1,Inner kinetochore subunit AME1,Inner kinetochore subunit AME1, ...
Authors:Yan, K, Yang, J, Zhang, Z, McLaughlin, S.H, Chang, L, Fasci, D, Heck, A.J.R, Barford, D.
Deposit date:2019-01-31
Release date:2019-10-02
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.55 Å)
Cite:Structure of the inner kinetochore CCAN complex assembled onto a centromeric nucleosome.
Nature, 574, 2019
3DSL
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BU of 3dsl by Molmil
The Three-dimensional Structure of Bothropasin, the Main Hemorrhagic Factor from Bothrops jararaca venom.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, FUROYL-LEUCINE, ...
Authors:Muniz, J.R.C, Ambrosio, A, Selistre-de-Araujo, H.S, Oliva, G, Garratt, R.C, Souza, D.H.F.
Deposit date:2008-07-13
Release date:2008-10-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The three-dimensional structure of bothropasin, the main hemorrhagic factor from Bothrops jararaca venom: Insights for a new classification of snake venom metalloprotease subgroups.
Toxicon, 52, 2008
4UOJ
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BU of 4uoj by Molmil
Structure of Fungal beta-mannosidase (GH2) from Trichoderma harzianum
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(3-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Muniz, J.R.C, Aparicio, R, Santos, J.C, Nascimento, A.S, Golubev, A.M, Polikarpov, I.
Deposit date:2014-06-04
Release date:2014-07-09
Last modified:2023-03-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Insights Into the Structure and Function of Fungal Beta-Mannosidases from Glycoside Hydrolase Family 2 Based on Multiple Crystal Structures of the Trichoderma Harzianum Enzyme.
FEBS J., 281, 2014
6QSD
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BU of 6qsd by Molmil
Crystal structure of Pizza6S
Descriptor: Pizza6S, SULFATE ION
Authors:Noguchi, H, Vandebroek, L, Kamata, K, Tame, J.R.H, Van Meervelt, L, Parac-Vogt, T.N, Voet, A.R.D.
Deposit date:2019-02-20
Release date:2020-03-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry.
Chem.Commun.(Camb.), 56, 2020
6QSH
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BU of 6qsh by Molmil
Crystal structure of the hybrid bioinorganic complex of Pizza6S linked by the 1:2 Ce-substituted Keggin
Descriptor: 1:2 Ce-substituted Keggin, Pizza6S
Authors:Noguchi, H, Vandebroek, L, Kamata, K, Tame, J.R.H, Van Meervelt, L, Parac-Vogt, T.N, Voet, A.R.D.
Deposit date:2019-02-20
Release date:2020-03-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Hybrid assemblies of a symmetric designer protein and polyoxometalates with matching symmetry.
Chem.Commun.(Camb.), 56, 2020
6TN6
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BU of 6tn6 by Molmil
X-ray structure of the endo-beta-1,4-mannanase from Thermotoga petrophila
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:da Silva, V.M, Squina, F.M, Sperenca, M, Martin, L, Muniz, J.R.C, Garcia, W, Nicolet, Y.
Deposit date:2019-12-06
Release date:2020-04-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:High-resolution structure of a modular hyperthermostable endo-beta-1,4-mannanase from Thermotoga petrophila: The ancillary immunoglobulin-like module is a thermostabilizing domain.
Biochim Biophys Acta Proteins Proteom, 1868, 2020
4USC
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BU of 4usc by Molmil
Crystal structure of peroxidase from palm tree Chamaerops excelsa
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Bernardes, A, Santos, J.C, Textor, L.C, Cuadrado, N.H, Kostetsky, E.Y, Roig, M.G, Muniz, J.R.C, Shnyrov, V.L, Polikarpov, I.
Deposit date:2014-07-07
Release date:2015-05-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure Analysis of Peroxidase from the Palm Tree Chamaerops Excelsa.
Biochimie, 111, 2015
8CMY
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BU of 8cmy by Molmil
Structure of the Cyanobium sp. PCC 7001 determined with C1 symmetry
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase large chain, ...
Authors:Evans, S.L, Bergeron, J.R.C.
Deposit date:2023-02-21
Release date:2023-03-22
Last modified:2023-06-14
Method:ELECTRON MICROSCOPY (3.79 Å)
Cite:Single-particle cryo-EM analysis of the shell architecture and internal organization of an intact alpha-carboxysome.
Structure, 31, 2023
5XG5
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BU of 5xg5 by Molmil
Crystal structure of Mitsuba-1 with bound NAcGal
Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, MITSUBA-1
Authors:Terada, D, Voet, A.R.D, Kamata, K, Zhang, K.Y.J, Tame, J.R.H.
Deposit date:2017-04-12
Release date:2017-07-12
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Computational design of a symmetrical beta-trefoil lectin with cancer cell binding activity.
Sci Rep, 7, 2017
1GCV
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BU of 1gcv by Molmil
DEOXY FORM HEMOGLOBIN FROM MUSTELUS GRISEUS
Descriptor: HEMOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE
Authors:Naoi, Y, Chong, K.T, Yoshimatsu, K, Miyazaki, G, Tame, J.R.H, Park, S.Y, Adachi, S.I, Morimoto, H.
Deposit date:2000-08-08
Release date:2000-08-31
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:The functional similarity and structural diversity of human and cartilaginous fish hemoglobins.
J.Mol.Biol., 307, 2001
1GCW
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BU of 1gcw by Molmil
CO form hemoglobin from mustelus griseus
Descriptor: CARBON MONOXIDE, PROTEIN (HEMOGLOBIN), PROTOPORPHYRIN IX CONTAINING FE
Authors:Naoi, Y, Chong, K.T, Yoshimatsu, K, Miyazaki, G, Tame, J.R.H, Park, S.Y, Adachi, S.I, Morimoto, H.
Deposit date:2000-08-08
Release date:2000-09-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:The functional similarity and structural diversity of human and cartilaginous fish hemoglobins.
J.Mol.Biol., 307, 2001
8OJ4
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BU of 8oj4 by Molmil
Structure of the MlaCD complex (1:6 stoichiometry)
Descriptor: ABC transporter substrate-binding protein, ABC-type organic solvent transporter
Authors:Wotherspoon, P, Bui, S, Sridhar, P, Bergeron, J.R.C, Knowles, T.J.
Deposit date:2023-03-23
Release date:2024-07-10
Method:ELECTRON MICROSCOPY (4.35 Å)
Cite:The structure of the MlaC-MlaD complex reveals novel insights into periplasmic phospholipid transport processes
To Be Published
8OJG
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BU of 8ojg by Molmil
Structure of the MlaCD complex (2:6 stoichiometry)
Descriptor: ABC transporter substrate-binding protein, ABC-type organic solvent transporter
Authors:Wotherspoon, P, Bui, S, Sridhar, P, Bergeron, J.R.C, Knowles, T.J.
Deposit date:2023-03-24
Release date:2024-07-10
Method:ELECTRON MICROSCOPY (4.38 Å)
Cite:The structure of the MlaC-MlaD complex reveals novel insights into periplasmic phospholipid transport processes
To Be Published
1NYF
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BU of 1nyf by Molmil
NMR STUDY OF THE SH3 DOMAIN FROM FYN PROTO-ONCOGENE TYROSINE KINASE, MINIMIZED AVERAGE (PROBMAP) STRUCTURE
Descriptor: FYN
Authors:Morton, C.J, Pugh, D.J.R, Campbell, I.D.
Deposit date:1996-04-22
Release date:1996-11-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure and peptide binding of the SH3 domain from human Fyn.
Structure, 4, 1996
1NYG
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BU of 1nyg by Molmil
NMR STUDY OF THE SH3 DOMAIN FROM FYN PROTO-ONCOGENE TYROSINE KINASE, FAMILY OF 20 STRUCTURES
Descriptor: FYN
Authors:Morton, C.J, Pugh, D.J.R, Campbell, I.D.
Deposit date:1996-04-22
Release date:1996-11-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure and peptide binding of the SH3 domain from human Fyn.
Structure, 4, 1996
1LQU
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BU of 1lqu by Molmil
Mycobacterium tuberculosis FprA in complex with NADPH
Descriptor: ACETATE ION, FLAVIN-ADENINE DINUCLEOTIDE, FprA, ...
Authors:Bossi, R.T, Aliverti, A, Raimondi, D, Fischer, F, Zanetti, G, Ferrari, D, Tahallah, N, Maier, C.S, Heck, A.J.R, Rizzi, M, Mattevi, A, TB Structural Genomics Consortium (TBSGC)
Deposit date:2002-05-13
Release date:2002-07-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:A covalent modification of NADP+ revealed by the atomic resolution structure of FprA, a Mycobacterium tuberculosis oxidoreductase.
Biochemistry, 41, 2002
6G6N
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BU of 6g6n by Molmil
Crystal structure of the computationally designed Tako8 protein in C2
Descriptor: Tako8
Authors:Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D.
Deposit date:2018-04-01
Release date:2018-11-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
5JYG
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BU of 5jyg by Molmil
Cryo-EM structure of the MamK filament at 6.5 A
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin-like ATPase, MAGNESIUM ION
Authors:Bergeron, J.R.C, Hutto, R, Kollman, J.M.
Deposit date:2016-05-13
Release date:2016-07-27
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (6.5 Å)
Cite:Structure of the magnetosome-associated actin-like MamK filament at subnanometer resolution.
Protein Sci., 26, 2017

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