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PDB: 3272 results

6X7N
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LnmK in complex with 2-nitronate-propionyl-amino(dethia)-CoA
Descriptor: Bifunctional methylmalonyl-CoA:ACP acyltransferase/decarboxylase, SULFATE ION, [1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylamino]-1-oxidanylidene-propan-2-ylidene]-bis(oxidanidyl)azanium
Authors:Stunkard, L.M, Kick, B.J, Lohman, J.R.
Deposit date:2020-05-30
Release date:2020-06-10
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Structures of LnmK, a Bifunctional Acyltransferase/Decarboxylase, with Substrate Analogues Reveal the Basis for Selectivity and Stereospecificity.
Biochemistry, 60, 2021
6XBQ
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BU of 6xbq by Molmil
Streptomyces coelicolor methylmalonyl-CoA epimerase in complex with carboxy-carba(dethia)-CoA
Descriptor: CARBOXYMETHYLDETHIA COENZYME *A, COBALT (II) ION, Methylmalonyl-CoA epimerase, ...
Authors:Stunkard, L.M, Boram, T.J, Benjamin, A.B, Bower, J.B, Lohman, J.R.
Deposit date:2020-06-07
Release date:2020-07-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Streptomyces coelicolor methylmalonyl-CoA epimerase in complex with carboxy-carba(dethia)-CoA
To Be Published
6XBT
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BU of 6xbt by Molmil
Streptomyces coelicolor methylmalonyl-CoA epimerase (Q60A) in complex with 2-nitronate-propionyl-CoA
Descriptor: COBALT (II) ION, COENZYME A, Methylmalonyl-CoA epimerase, ...
Authors:Stunkard, L.M, Boram, T.J, Benjamin, A.B, Bower, J.B, Lohman, J.R.
Deposit date:2020-06-07
Release date:2020-07-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Streptomyces coelicolor methylmalonyl-CoA epimerase (Q60A) in complex with 2-nitronate-propionyl-CoA
To Be Published
6X7L
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BU of 6x7l by Molmil
LnmK in complex with 2-nitronate-propionyl-CoA
Descriptor: ALANINE, Bifunctional methylmalonyl-CoA:ACP acyltransferase/decarboxylase, SULFATE ION, ...
Authors:Stunkard, L.M, Kick, B.J, Lohman, J.R.
Deposit date:2020-05-30
Release date:2020-06-10
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structures of LnmK, a Bifunctional Acyltransferase/Decarboxylase, with Substrate Analogues Reveal the Basis for Selectivity and Stereospecificity.
Biochemistry, 60, 2021
6X7P
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BU of 6x7p by Molmil
LnmK in complex with 2-sulfonate-propionyl-oxa(dethia)-CoA
Descriptor: (2~{R})-1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethoxy]-1-oxidanylidene-propane-2-sulfonic acid, (2~{S})-1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethoxy]-1-oxidanylidene-propane-2-sulfonic acid, Conserved hypthetical protein, ...
Authors:Stunkard, L.M, Kick, B.J, Lohman, J.R.
Deposit date:2020-05-30
Release date:2020-06-10
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structures of LnmK, a Bifunctional Acyltransferase/Decarboxylase, with Substrate Analogues Reveal the Basis for Selectivity and Stereospecificity.
Biochemistry, 60, 2021
6YGN
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BU of 6ygn by Molmil
Titin kinase and its flanking domains
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Titin
Authors:Fleming, J.R, Franke, B, Bogomolovas, J, Mayans, O.
Deposit date:2020-03-27
Release date:2021-04-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Titin kinase ubiquitination aligns autophagy receptors with mechanical signals in the sarcomere.
Embo Rep., 22, 2021
6WJR
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BU of 6wjr by Molmil
Apo structure of the FMN riboswitch aptamer domain in the presence of sulfate
Descriptor: MAGNESIUM ION, RNA (112-MER), SULFATE ION
Authors:Wilt, H.M, Wang, Y.-X, Stagno, J.R.
Deposit date:2020-04-14
Release date:2020-09-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:FMN riboswitch aptamer symmetry facilitates conformational switching through mutually exclusive coaxial stacking configurations.
J Struct Biol X, 4, 2020
6WK2
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BU of 6wk2 by Molmil
SETD3 mutant (N255V) in Complex with an Actin Peptide with His73 Replaced with Methionine
Descriptor: 1,2-ETHANEDIOL, Actin, cytoplasmic 2, ...
Authors:Dai, S, Horton, J.R, Cheng, X.
Deposit date:2020-04-15
Release date:2020-06-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Characterization of SETD3 methyltransferase-mediated protein methionine methylation.
J.Biol.Chem., 295, 2020
6X63
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BU of 6x63 by Molmil
Atomic-Resolution Structure of HIV-1 Capsid Tubes by Magic Angle Spinning NMR
Descriptor: HIV-1 capsid protein
Authors:Lu, M, Russell, R.W, Bryer, A, Quinn, C.M, Hou, G, Zhang, H, Schwieters, C.D, Perilla, J.R, Gronenborn, A.M, Polenova, T.
Deposit date:2020-05-27
Release date:2020-09-02
Last modified:2024-05-15
Method:SOLID-STATE NMR
Cite:Atomic-resolution structure of HIV-1 capsid tubes by magic-angle spinning NMR.
Nat.Struct.Mol.Biol., 27, 2020
6YXE
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BU of 6yxe by Molmil
Structure of the Trim69 RING domain
Descriptor: E3 ubiquitin-protein ligase TRIM69, ZINC ION
Authors:Keown, J.R, Goldstone, D.C.
Deposit date:2020-05-01
Release date:2020-10-14
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The RING domain of TRIM69 promotes higher-order assembly.
Acta Crystallogr D Struct Biol, 76, 2020
6WE9
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BU of 6we9 by Molmil
YTH domain of human YTHDC1 with 11mer ssDNA Containing N6mA
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*CP*GP*GP*(6MA)P*CP*TP*CP*TP*G)-3'), GLYCEROL, ...
Authors:Horton, J.R, Cheng, X.
Deposit date:2020-04-01
Release date:2020-07-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Biochemical and structural basis for YTH domain of human YTHDC1 binding to methylated adenine in DNA.
Nucleic Acids Res., 48, 2020
6WF6
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BU of 6wf6 by Molmil
Streptomyces coelicolor methylmalonyl-CoA epimerase
Descriptor: COBALT (II) ION, DI(HYDROXYETHYL)ETHER, Methylmalonyl-CoA epimerase
Authors:Stunkard, L.M, Benjamin, A.B, Bower, J.B, Huth, T.J, Lohman, J.R.
Deposit date:2020-04-03
Release date:2020-07-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Substrate Enolate Intermediate and Mimic Captured in the Active Site of Streptomyces coelicolor Methylmalonyl-CoA Epimerase.
Chembiochem, 23, 2022
6WFH
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BU of 6wfh by Molmil
Streptomyces coelicolor methylmalonyl-CoA epimerase substrate complex
Descriptor: (3S,5R,9R,19E)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9,19-tetrahydroxy-8,8,20-trimethyl-10,14-dioxo-2,4,6-trioxa-18-thia-11,15-diaza-3,5-diphosphahenicos-19-en-21-oic acid 3,5-dioxide (non-preferred name), CHLORIDE ION, COBALT (II) ION, ...
Authors:Stunkard, L.M, Benjamin, A.B, Bower, J.B, Huth, T.J, Lohman, J.R.
Deposit date:2020-04-03
Release date:2020-07-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Substrate Enolate Intermediate and Mimic Captured in the Active Site of Streptomyces coelicolor Methylmalonyl-CoA Epimerase.
Chembiochem, 23, 2022
6Z8F
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BU of 6z8f by Molmil
Human Picobirnavirus D45-CP VLP
Descriptor: Capsid protein precursor
Authors:Ortega-Esteban, A, Mata, C.P, Rodriguez-Espinosa, M.J, Luque, D, Irigoyen, N, Rodriguez, J.M, de Pablo, P.J, Caston, J.R.
Deposit date:2020-06-02
Release date:2020-09-16
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-electron Microscopy Structure, Assembly, and Mechanics Show Morphogenesis and Evolution of Human Picobirnavirus.
J.Virol., 94, 2020
6Z8D
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BU of 6z8d by Molmil
Human Picobirnavirus CP VLP
Descriptor: Capsid protein precursor
Authors:Ortega-Esteban, A, Mata, C.P, Rodriguez-Espinosa, M.J, Luque, D, Irigoyen, N, Rodriguez, J.M, de Pablo, P.J, Caston, J.R.
Deposit date:2020-06-02
Release date:2020-09-23
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.63 Å)
Cite:Cryo-electron Microscopy Structure, Assembly, and Mechanics Show Morphogenesis and Evolution of Human Picobirnavirus.
J.Virol., 94, 2020
3UXM
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BU of 3uxm by Molmil
Structure Guided Development of Novel Thymidine Mimetics targeting Pseudomonas aeruginosa Thymidylate Kinase: from Hit to Lead Generation
Descriptor: 5'-deoxy-5'-fluorothymidine, MAGNESIUM ION, Thymidylate kinase
Authors:Choi, J.Y, Plummer, M.S, Starr, J, Desbonnet, C.R, Soutter, H.H, Chang, J, Miller, J.R, Dillman, K, Miller, A.A, Roush, W.R.
Deposit date:2011-12-05
Release date:2012-02-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure guided development of novel thymidine mimetics targeting Pseudomonas aeruginosa thymidylate kinase: from hit to lead generation.
J.Med.Chem., 55, 2012
1SCS
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BU of 1scs by Molmil
HIGH-RESOLUTION STRUCTURES OF SINGLE-METAL-SUBSTITUTED CONCANAVALIN A: THE CO,CA-PROTEIN AT 1.6 ANGSTROMS AND THE NI,CA-PROTEIN AT 2.0 ANGSTROMS
Descriptor: CALCIUM ION, COBALT (II) ION, CONCANAVALIN A
Authors:Emmerich, C, Helliwell, J.R, Redshaw, M, Naismith, J.H, Harrop, S.J, Raftery, J, Kalb, A.J, Yariv, J, Dauter, Z, Wilson, K.S.
Deposit date:1993-12-06
Release date:1994-05-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High-resolution structures of single-metal-substituted concanavalin A: the Co,Ca-protein at 1.6 A and the Ni,Ca-protein at 2.0 A.
Acta Crystallogr.,Sect.D, 50, 1994
2Y6P
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BU of 2y6p by Molmil
Evidence for a Two-Metal-Ion-Mechanism in the Kdo- Cytidylyltransferase KdsB
Descriptor: 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE, BETA-MERCAPTOETHANOL, CYTIDINE-5'-TRIPHOSPHATE, ...
Authors:Schmidt, H, Mesters, J.R, Mamat, U, Hilgenfeld, R.
Deposit date:2011-01-25
Release date:2011-08-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Evidence for a Two-Metal-Ion Mechanism in the Cytidyltransferase Kdsb, an Enzyme Involved in Lipopolysaccharide Biosynthesis.
Plos One, 6, 2011
4G4H
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BU of 4g4h by Molmil
100K X-ray diffraction study of carboplatin binding to HEWL in DMSO media after 13 months of crystal storage
Descriptor: CHLORIDE ION, DIMETHYL SULFOXIDE, Lysozyme C, ...
Authors:Tanley, S.W.M, Schreurs, A.M.M, Kroon-Batenburg, L.M.J, Helliwell, J.R.
Deposit date:2012-07-16
Release date:2012-11-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Room-temperature X-ray diffraction studies of cisplatin and carboplatin binding to His15 of HEWL after prolonged chemical exposure.
Acta Crystallogr.,Sect.F, 68, 2012
4BUP
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BU of 4bup by Molmil
A novel route to product specificity in the Suv4-20 family of histone H4K20 methyltransferases
Descriptor: GLYCEROL, HISTONE-LYSINE N-METHYLTRANSFERASE SUV420H1, S-ADENOSYLMETHIONINE, ...
Authors:Southall, S.M, Cronin, N.B, Wilson, J.R.
Deposit date:2013-06-21
Release date:2013-10-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.166 Å)
Cite:A Novel Route to Product Specificity in the Suv4-20 Family of Histone H4K20 Methyltransferases.
Nucleic Acids Res., 42, 2014
4G49
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BU of 4g49 by Molmil
Room temperature X-ray diffraction of cisplatin binding to HEWL in aqueous media after 15 months of crystal storage
Descriptor: ACETATE ION, CHLORIDE ION, Cisplatin, ...
Authors:Tanley, S.W.M, Schreurs, A.M.M, Kroon-Batenburg, L.M.J, Helliwell, J.R.
Deposit date:2012-07-16
Release date:2012-11-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Room-temperature X-ray diffraction studies of cisplatin and carboplatin binding to His15 of HEWL after prolonged chemical exposure.
Acta Crystallogr.,Sect.F, 68, 2012
3V78
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BU of 3v78 by Molmil
Crystal Structure of Transcriptional Regulator
Descriptor: ETHIDIUM, PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY DEOR-FAMILY)
Authors:Do, S.V, Bolla, J.R, Chen, X, Yu, E.W.
Deposit date:2011-12-20
Release date:2012-12-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.299 Å)
Cite:Structural and functional analysis of the transcriptional regulator Rv3066 of Mycobacterium tuberculosis.
Nucleic Acids Res., 40, 2012
1TD5
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BU of 1td5 by Molmil
Crystal Structure of the Ligand Binding Domain of E. coli IclR.
Descriptor: Acetate operon repressor
Authors:Walker, J.R, Evdokimova, L, Zhang, R.-G, Bochkarev, A, Joachimiak, A, Arrowsmith, C, Edwards, A, Savchenko, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2004-05-21
Release date:2004-07-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Analyses of the Ligand Binding Sites of the IclR family of transcriptional regulators
To be Published
4G9Y
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BU of 4g9y by Molmil
Crystal Structure of the PcaV transcriptional regulator from Streptomyces coelicolor
Descriptor: GLYCEROL, PcaV transcriptional regulator
Authors:Brown, B.L, Davis, J.R, Sello, J.K, Page, R.
Deposit date:2012-07-24
Release date:2013-06-05
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.051 Å)
Cite:Study of PcaV from Streptomyces coelicolor yields new insights into ligand-responsive MarR family transcription factors.
Nucleic Acids Res., 41, 2013
4GCE
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BU of 4gce by Molmil
Room temperature X-ray diffraction study of a 6-fold molar excess of a cisplatin/carboplatin mixture binding to HEWL, Dataset 3
Descriptor: Cisplatin, DIMETHYL SULFOXIDE, Lysozyme C
Authors:Helliwell, J.R, Tanley, S.W.M.
Deposit date:2012-07-30
Release date:2013-01-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The crystal structure analysis of the relative binding of cisplatin and carboplatin in a mixture with histidine in a protein studied at 100 and 300 K with repeated X-ray irradiation.
Acta Crystallogr.,Sect.D, 69, 2013

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