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PDB: 3296 results

1UT8
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Divalent metal ions (zinc) bound to T5 5'-exonuclease
Descriptor: EXODEOXYRIBONUCLEASE, ZINC ION
Authors:Ceska, T.A, Sayers, J.R, Suck, D.
Deposit date:2003-12-04
Release date:2004-02-05
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Roles of Divalent Metal Ions in Flap Endonuclease-Substrate Interactions
Nat.Struct.Mol.Biol., 11, 2004
1V1J
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Crystal structure of type II Dehydroquintae Dehydratase from Streptomyces coelicolor in complex with 3-fluoro
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-ANHYDRO-3-FLUORO-QUINIC ACID, 3-DEHYDROQUINATE DEHYDRATASE
Authors:Roszak, A.W, Coggins, J.R, Lapthorn, A.J.
Deposit date:2004-04-16
Release date:2005-01-26
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:(1R,4S,5R)-3-Fluoro-1,4,5-Trihydroxy-2-Cyclohexene-1-Carboxylic Acid: The Fluoro Analogue of the Enolate Intermediate in the Reaction Catalyzed by Type II Dehydroquinases
Org.Biomol.Chem., 2, 2004
3Q66
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Structure of the Vps75-Rtt109 histone chaperone-lysine acetyltransferase complex (Full-length proteins in space group P6122)
Descriptor: Histone acetyltransferase RTT109, SULFATE ION, Vacuolar protein sorting-associated protein 75
Authors:Su, D, Thompson, J.R, Mer, G.
Deposit date:2010-12-30
Release date:2011-03-23
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.705 Å)
Cite:Structure and histone binding properties of the Vps75-Rtt109 chaperone-lysine acetyltransferase complex.
J.Biol.Chem., 286, 2011
3QXU
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Free Structure of an Anti-Methotrexate CDR1-3 Graft VHH Antibody
Descriptor: Anti-Methotrexate CDR1-3 Graft, FORMIC ACID
Authors:Fanning, S.W, Horn, J.R.
Deposit date:2011-03-02
Release date:2011-07-06
Last modified:2013-09-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:An anti-hapten camelid antibody reveals a cryptic binding site with significant energetic contributions from a nonhypervariable loop.
Protein Sci., 20, 2011
3QXT
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Structure of an Anti-Methotrexate CDR1-3 Graft VHH Antibody in Complex with Methotrexate
Descriptor: Anti-Methotrexate CDR1-3 Graft VHH, METHOTREXATE, SODIUM ION
Authors:Fanning, S.W, Horn, J.R.
Deposit date:2011-03-02
Release date:2011-07-06
Last modified:2013-09-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:An anti-hapten camelid antibody reveals a cryptic binding site with significant energetic contributions from a nonhypervariable loop.
Protein Sci., 20, 2011
3QOA
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Crystal structure of a human cytochrome P450 2B6 (Y226H/K262R) in complex with the inhibitor 4-Benzylpyridine.
Descriptor: 4-benzylpyridine, 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE, Cytochrome P450 2B6, ...
Authors:Shah, M.B, Pascual, J, Stout, C.D, Halpert, J.R.
Deposit date:2011-02-09
Release date:2011-09-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of Cytochrome P450 2B6 Bound to 4-Benzylpyridine and 4-(4-Nitrobenzyl)pyridine: Insight into Inhibitor Binding and Rearrangement of Active Site Side Chains.
Mol.Pharmacol., 80, 2011
1TJG
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Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 7mer epitope
Descriptor: 1,2-ETHANEDIOL, Envelope glycoprotein GP41, FAB 2F5 Heavy Chain, ...
Authors:Ofek, G, Tang, M, Sambor, A, Katinger, H, Mascola, J.R, Wyatt, R, Kwong, P.D.
Deposit date:2004-06-04
Release date:2004-10-05
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and mechanistic analysis of the Anti-Human Immunodeficiency Virus Type 1 antibody 2F5 in complex with its gp41 epitope
J.Virol., 78, 2004
3QSK
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5 Histidine Variant of the anti-RNase A VHH in Complex with RNAse A
Descriptor: Engineered 5 Histidine anti-RNase A Camelid VHH Antibody Domain Variant, Ribonuclease pancreatic
Authors:Murtaugh, M.L, Fanning, S.W, Sharma, T.M, Terry, A.M, Horn, J.R.
Deposit date:2011-02-21
Release date:2011-08-10
Last modified:2011-11-30
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A combinatorial histidine scanning library approach to engineer highly pH-dependent protein switches.
Protein Sci., 20, 2011
3TXE
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HEWL co-crystallization with carboplatin in aqueous media with paratone as the cryoprotectant
Descriptor: 2-methylprop-1-ene, CHLORIDE ION, Lysozyme C, ...
Authors:Tanley, S.W.M, Schreurs, A.M.M, Helliwell, J.R, Kroon-Batenburg, L.M.J.
Deposit date:2011-09-23
Release date:2013-01-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Experience with exchange and archiving of raw data: comparison of data from two diffractometers and four software packages on a series of lysozyme crystals.
J.Appl.Crystallogr., 46, 2013
3TXK
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HEWL co-crystallization with cisplatin in DMSO media with paratone as the cryoprotectant at pH 6.5
Descriptor: CHLORIDE ION, Cisplatin, DIMETHYL SULFOXIDE, ...
Authors:Tanley, S.W.M, Schreurs, A.M.M, Helliwell, J.R, Kroon-Batenburg, L.M.J.
Deposit date:2011-09-23
Release date:2013-01-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Experience with exchange and archiving of raw data: comparison of data from two diffractometers and four software packages on a series of lysozyme crystals.
J.Appl.Crystallogr., 46, 2013
3U25
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Crystal structure of P. aeruginoas azurin containing a Tyr-His hydrogen bonded pair
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Azurin, COPPER (II) ION
Authors:Warren, J.J, Winkler, J.R, Gray, H.B.
Deposit date:2011-09-30
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Redox properties of tyrosine and related molecules.
Febs Lett., 586, 2012
1W39
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BU of 1w39 by Molmil
Crystal structure of an artificial top component of turnip yellow mosaic virus
Descriptor: TURNIP YELLOW MOSAIC VIRUS EMPTY CAPSID
Authors:van Roon, A.M.M, Bink, H.H.J, Plaisier, J.R, Pleij, C.W.A, Abrahams, J.P, Pannu, N.S.
Deposit date:2004-07-14
Release date:2004-08-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.75 Å)
Cite:Crystal Structure of an Empty Capsid of Turnip Yellow Mosaic Virus.
J.Mol.Biol., 341, 2004
3RFN
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Epitope backbone grafting by computational design for improved presentation of linear epitopes on scaffold proteins
Descriptor: BB_1wnu_001, ZINC ION
Authors:Azoitei, M.L, Ban, Y.A, Julien, J.P, Bryson, S, Schroeter, A, Kalyuzhniy, O, Porter, J.R, Adachi, Y, Baker, D, Szabo, E, Pai, E.F, Schief, W.R.
Deposit date:2011-04-06
Release date:2011-11-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Computational design of high-affinity epitope scaffolds by backbone grafting of a linear epitope.
J.Mol.Biol., 415, 2012
3RK6
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Crystal structure of the middle domain of human Paip1
Descriptor: Polyadenylate-binding protein-interacting protein 1
Authors:Lei, J, Mesters, J.R, Hilgenfeld, R.
Deposit date:2011-04-17
Release date:2011-05-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the middle domain of human poly(A)-binding protein-interacting protein 1.
Biochem.Biophys.Res.Commun., 408, 2011
1U71
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Understanding the Role of Leu22 Variants in Methotrexate Resistance: Comparison of Wild-type and Leu22Arg Variant Mouse and Human Dihydrofolate Reductase Ternary Crystal Complexes with Methotrexate and NADPH
Descriptor: 6-(2,5-DIMETHOXY-BENZYL)-5-METHYL-PYRIDO[2,3-D]PYRIMIDINE-2,4-DIAMINE, Dihydrofolate reductase, SULFATE ION
Authors:Cody, V, Luft, J.R, Pangborn, W.
Deposit date:2004-08-02
Release date:2005-02-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Understanding the role of Leu22 variants in methotrexate resistance: comparison of wild-type and Leu22Arg variant mouse and human dihydrofolate reductase ternary crystal complexes with methotrexate and NADPH.
Acta Crystallogr.,Sect.D, 61, 2005
3RAY
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BU of 3ray by Molmil
Crystal structure of Methyltransferase domain of human PR domain-containing protein 11
Descriptor: CHLORIDE ION, PR domain-containing protein 11, SODIUM ION, ...
Authors:Dong, A, Zeng, H, Loppnau, P, Walker, J.R, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Min, J, Wu, H, Structural Genomics Consortium (SGC)
Deposit date:2011-03-28
Release date:2011-04-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal structure of Methyltransferase domain of human PR domain-containing protein 11
To be Published
3RDH
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BU of 3rdh by Molmil
X-ray induced covalent inhibition of 14-3-3
Descriptor: 14-3-3 protein zeta/delta, 4-[(E)-{4-formyl-5-hydroxy-6-methyl-3-[(phosphonooxy)methyl]pyridin-2-yl}diazenyl]benzoic acid, NICKEL (II) ION
Authors:Horton, J.R, Upadhyay, A.K, Fu, H, Cheng, X.
Deposit date:2011-04-01
Release date:2011-09-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Discovery and structural characterization of a small molecule 14-3-3 protein-protein interaction inhibitor.
Proc.Natl.Acad.Sci.USA, 108, 2011
1UD7
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BU of 1ud7 by Molmil
SOLUTION STRUCTURE OF THE DESIGNED HYDROPHOBIC CORE MUTANT OF UBIQUITIN, 1D7
Descriptor: PROTEIN (UBIQUITIN CORE MUTANT 1D7)
Authors:Johnson, E.C, Lazar, G.A, Desjarlais, J.R, Handel, T.M.
Deposit date:1999-04-07
Release date:1999-05-06
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure and dynamics of a designed hydrophobic core variant of ubiquitin.
Structure Fold.Des., 7, 1999
3TXF
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BU of 3txf by Molmil
HEWL co-crystallization with cisplatin in DMSO media with glycerol as the cryoprotectant
Descriptor: CHLORIDE ION, Cisplatin, DIMETHYL SULFOXIDE, ...
Authors:Tanley, S.W.M, Schreurs, A.M.M, Helliwell, J.R, Kroon-Batenburg, L.M.J.
Deposit date:2011-09-23
Release date:2013-01-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Experience with exchange and archiving of raw data: comparison of data from two diffractometers and four software packages on a series of lysozyme crystals.
J.Appl.Crystallogr., 46, 2013
1VRX
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BU of 1vrx by Molmil
Endocellulase e1 from acidothermus cellulolyticus mutant y245g
Descriptor: ENDOCELLULASE E1 FROM A. CELLULOLYTICUS
Authors:Baker, J.O, McCarley, J.R, Lovett, R, Yu, C.H, Adney, W.S, Rignall, T.R, Vinzant, T.B, Decker, S.R, Sakon, J, Himmel, M.E.
Deposit date:2005-06-30
Release date:2005-07-05
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Catalytically enhanced endocellulase Cel5A from Acidothermus cellulolyticus.
Appl.Biochem.Biotechnol., 121-124, 2005
3U12
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BU of 3u12 by Molmil
The pleckstrin homology (PH) domain of USP37
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, SULFATE ION, ...
Authors:Dong, A, Nair, U.B, Wernimont, A, Walker, J.R, Weigelt, J, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2011-09-29
Release date:2011-11-09
Last modified:2012-05-02
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:The pleckstrin homology (PH) domain of USP37
To be Published
3U7A
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BU of 3u7a by Molmil
AL-09 Y32F Y96F
Descriptor: Amyloidogenic immunoglobulin light chain protein AL-09 Y32F Y96F, variable domain
Authors:DiCostanzo, A.C, Thompson, J.R, Ramirez-Alvarado, M.
Deposit date:2011-10-13
Release date:2012-07-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Tyrosine Residues mediate crucial interactions in amyloid formation for immunoglobulin light chains
To be Published
1VKG
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BU of 1vkg by Molmil
Crystal Structure of Human HDAC8 complexed with CRA-19156
Descriptor: 5-(4-METHYL-BENZOYLAMINO)-BIPHENYL-3,4'-DICARBOXYLIC ACID 3-DIMETHYLAMIDE-4'-HYDROXYAMIDE, Histone deacetylase 8, SODIUM ION, ...
Authors:Somoza, J.R, Skene, R.J, Katz, B.A, Mol, C, Ho, J.D, Jennings, A.J, Luong, C, Arvai, A, Buggy, J.J, Chi, E, Tang, J, Sang, B.-C, Verner, E, Wynands, R, Leahy, E.M, Dougan, D.R, Snell, G, Navre, M, Knuth, M.W, Swanson, R.V, McRee, D.E, Tari, L.W.
Deposit date:2004-05-13
Release date:2004-07-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Snapshots of Human HDAC8 Provide Insights into the Class I Histone Deacetylases
Structure, 12, 2004
3TIP
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BU of 3tip by Molmil
Crystal structure of Staphylococcus aureus SasG E-G52 module
Descriptor: Surface protein G
Authors:Gruszka, D.T, Wojdyla, J.A, Turkenburg, J.P, Potts, J.R.
Deposit date:2011-08-21
Release date:2012-04-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7009 Å)
Cite:Staphylococcal biofilm-forming protein has a contiguous rod-like structure.
Proc.Natl.Acad.Sci.USA, 109, 2012
3TXD
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HEWL co-crystallization with carboplatin in aqueous media with glycerol as the cryoprotectant
Descriptor: CHLORIDE ION, GLYCEROL, Lysozyme C, ...
Authors:Tanley, S.W.M, Schreurs, A.M.M, Helliwell, J.R, Kroon-Batenburg, L.M.J.
Deposit date:2011-09-23
Release date:2013-01-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Experience with exchange and archiving of raw data: comparison of data from two diffractometers and four software packages on a series of lysozyme crystals.
J.Appl.Crystallogr., 46, 2013

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