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PDB: 2996 results

7UKA
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BU of 7uka by Molmil
YgiC from Escherichia coli K-12 in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, NICKEL (II) ION, Putative acid--amine ligase YgiC, ...
Authors:Pederick, J.L, Bruning, J.B.
Deposit date:2022-03-31
Release date:2023-02-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Escherichia coli YgiC and YjfC Possess Peptide─Spermidine Ligase Activity.
Biochemistry, 62, 2023
7U9K
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BU of 7u9k by Molmil
Staphylococcus aureus D-alanine-D-alanine ligase in complex with ATP, D-ala-D-ala, Mg2+ and K+
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, D-alanine--D-alanine ligase, ...
Authors:Pederick, J.L, Bruning, J.B.
Deposit date:2022-03-10
Release date:2023-03-15
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-guided design and synthesis of ATP-competitive N-acyl-substituted sulfamide d-alanine-d-alanine ligase inhibitors.
Bioorg.Med.Chem., 96, 2023
1JJB
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BU of 1jjb by Molmil
A neutral molecule in cation-binding site: Specific binding of PEG-SH to Acetylcholinesterase from Torpedo californica
Descriptor: 1-DEOXY-1-THIO-HEPTAETHYLENE GLYCOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETYLCHOLINESTERASE
Authors:Koellner, G, Steiner, T, Millard, C.B, Silman, I, Sussman, J.L.
Deposit date:2001-07-04
Release date:2002-07-17
Last modified:2021-06-02
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A neutral molecule in a cation-binding site: specific binding of a PEG-SH to acetylcholinesterase from Torpedo californica.
J.Mol.Biol., 320, 2002
8SY2
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BU of 8sy2 by Molmil
Peanut USP-type BURP Domain Peptide Cyclase
Descriptor: BURP domain-containing protein
Authors:Mydy, L.S, Kersten, R.D, Smith, J.L.
Deposit date:2023-05-24
Release date:2024-02-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:An intramolecular macrocyclase in plant ribosomal peptide biosynthesis.
Nat.Chem.Biol., 20, 2024
8SY3
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BU of 8sy3 by Molmil
Copper Complex of Peanut USP-type BURP Domain Peptide Cyclase
Descriptor: BURP domain-containing protein, COPPER (II) ION
Authors:Mydy, L.S, Kersten, R.D, Smith, J.L.
Deposit date:2023-05-24
Release date:2024-02-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:An intramolecular macrocyclase in plant ribosomal peptide biosynthesis.
Nat.Chem.Biol., 20, 2024
8SEF
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BU of 8sef by Molmil
Crystal structure of Cy137C02, a monoclonal antibody isolated from macaques immunized with an Epstein-Barr virus glycoprotein 350 (gp350) nanoparticle vaccine
Descriptor: Cy137C02 Fab heavy chain, Cy137C02 Fab light chain, GLYCEROL, ...
Authors:Joyce, M.G, Jensen, J.L, Chen, W.H, Kanekiyo, M.
Deposit date:2023-04-09
Release date:2024-04-17
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Crystal structure of Cy137C02, a monoclonal antibody isolated from macaques immunized with an Epstein-Barr virus glycoprotein 350 (gp350) nanoparticle vaccine
To Be Published
1JV8
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BU of 1jv8 by Molmil
NMR Structure of BPTI Mutant G37A
Descriptor: TRYPSIN INHIBITOR
Authors:Battiste, J.L, Li, R, Woodward, C.
Deposit date:2001-08-28
Release date:2001-09-12
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:A highly destabilizing mutation, G37A, of the bovine pancreatic trypsin inhibitor retains the average native conformation but greatly increases local flexibility
Biochemistry, 41, 2002
8SGN
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BU of 8sgn by Molmil
Crystal structure of Epstein-Barr virus glycoprotein 350 (gp350) in complex with Cy651H02, a monoclonal antibody isolated from macaques immunized with a gp350 nanoparticle vaccine
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Joyce, M.G, Jensen, J.L, Chen, W.H, Kanekiyo, M.
Deposit date:2023-04-12
Release date:2024-04-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Epstein-Barr virus glycoprotein 350 (gp350) in complex with Cy651H02, a monoclonal antibody isolated from macaques immunized with a gp350 nanoparticle vaccine
To Be Published
8FB3
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BU of 8fb3 by Molmil
PreQ1-1 (type-1) riboswitch with stacked metabolites and a C10-G34 base pair in the expression platform
Descriptor: 7-DEAZA-7-AMINOMETHYL-GUANINE, MAGNESIUM ION, RNA (34-MER) Riboswitch
Authors:Wedekind, J.E, Schroeder, G.M, Jenkins, J.L.
Deposit date:2022-11-29
Release date:2023-02-22
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:A riboswitch separated from its ribosome-binding site still regulates translation.
Nucleic Acids Res., 51, 2023
7V05
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BU of 7v05 by Molmil
Complex of Plasmodium falciparum circumsporozoite protein with 850 Fab
Descriptor: 850 Fab Heavy Chain, 850 Fab Light Chain, Circumsporozoite protein
Authors:Kucharska, I, Prieto, K, Rubinstein, J.L, Julien, J.P.
Deposit date:2022-05-09
Release date:2022-11-23
Last modified:2022-12-14
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:High-density binding to Plasmodium falciparum circumsporozoite protein repeats by inhibitory antibody elicited in mouse with human immunoglobulin repertoire.
Plos Pathog., 18, 2022
8SGA
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BU of 8sga by Molmil
Crystal structure of 770E11, a monoclonal antibody isolated from a human Epstein-Barr virus seropositive donor
Descriptor: 770E11 Fab heavy chain, 770E11 Fab light chain, GLYCEROL, ...
Authors:Chen, W.H, Jensen, J.L, Joyce, M.G.
Deposit date:2023-04-12
Release date:2024-04-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of 770E11, a monoclonal antibody isolated from a human Epstein-Barr virus seropositive donor
To Be Published
8SIC
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BU of 8sic by Molmil
Crystal structure of Epstein-Barr virus glycoprotein 350 (gp350) in complex with Cy137C02, a monoclonal antibody isolated from macaques immunized with a gp350 nanoparticle vaccine
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cy137C02 Fab heavy chain, Cy137C02 Fab light chain, ...
Authors:Joyce, M.G, Jensen, J.L, Chen, W.H, Kanekiyo, M.
Deposit date:2023-04-14
Release date:2024-04-17
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Crystal structure of Epstein-Barr virus glycoprotein 350 (gp350) in complex with Cy137C02, a monoclonal antibody isolated from macaques immunized with a gp350 nanoparticle vaccine
To Be Published
8SGG
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BU of 8sgg by Molmil
Crystal structure of Cy137D09, a monoclonal antibody isolated from macaques immunized with an Epstein-Barr virus glycoprotein 350 (gp350) nanoparticle vaccine
Descriptor: Cy137D09 Fab heavy chain, Cy137D09 Fab light chain, GLYCEROL
Authors:Joyce, M.G, Jensen, J.L, Chen, W.H, Kanekiyo, M.
Deposit date:2023-04-12
Release date:2024-04-17
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal structure of Cy137D09, a monoclonal antibody isolated from macaques immunized with an Epstein-Barr virus glycoprotein 350 (gp350) nanoparticle vaccine
To Be Published
8SQL
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BU of 8sql by Molmil
Cleaved Ycf1p Monomer in the Beta Conformation
Descriptor: Metal resistance protein YCF1, PHOSPHATIDYLETHANOLAMINE, Unknown peptide from Ycf1p R region
Authors:Bickers, S.C, Benlekbir, S, Rubinstein, J.L, Kanelis, V.
Deposit date:2023-05-04
Release date:2024-05-08
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cleaved Ycf1p Monomer in the Beta Conformation
To Be Published
8T4A
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BU of 8t4a by Molmil
MD65 N332-GT5 SOSIP in complex with RM_N332_36 Fab and RM20A3 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MD65 N332-GT5 SOSIP gp120, ...
Authors:Ozorowski, G, Torres, J.L, Ward, A.B.
Deposit date:2023-06-08
Release date:2024-05-08
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates.
Science, 384, 2024
8T49
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BU of 8t49 by Molmil
MD65 N332-GT5 SOSIP in complex with RM_N332_03 Fab and RM20A3 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MD65 N332-GT5 SOSIP gp120, ...
Authors:Ozorowski, G, Torres, J.L, Ward, A.B.
Deposit date:2023-06-08
Release date:2024-05-08
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates.
Science, 384, 2024
8SQ0
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BU of 8sq0 by Molmil
Cleaved Ycf1p Dimer in the IFwide-beta conformation
Descriptor: (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(pentadecanoyloxy)methyl]ethyl (12E)-hexadeca-9,12-dienoate, 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE, Metal resistance protein YCF1, ...
Authors:Bickers, S.C, Benlekbir, S, Rubinstein, J.L, Kanelis, V.
Deposit date:2023-05-04
Release date:2024-05-08
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of a dimeric ABC transporter
To Be Published
8T4K
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BU of 8t4k by Molmil
MD64 N332-GT5 SOSIP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MD64 N332-GT5 SOSIP gp120, ...
Authors:Ozorowski, G, Torres, J.L, Ward, A.B.
Deposit date:2023-06-09
Release date:2024-05-08
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates.
Science, 384, 2024
8SQM
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BU of 8sqm by Molmil
Cleaved Ycf1p Monomer in the IFwide-alpha conformation
Descriptor: (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate, Metal resistance protein YCF1, Unknown peptide from Ycf1p R region
Authors:Bickers, S.C, Benlekbir, S, Rubinstein, J.L, Kanelis, V.
Deposit date:2023-05-04
Release date:2024-05-08
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of a dimeric ABC transporter
To Be Published
8T4L
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BU of 8t4l by Molmil
MD65 N332-GT5 SOSIP in complex with RM_N332_07 Fab and RM20A3 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MD65 N332-GT5 SOSIP gp120, ...
Authors:Ozorowski, G, Torres, J.L, Ward, A.B.
Deposit date:2023-06-09
Release date:2024-05-08
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates.
Science, 384, 2024
8T4D
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BU of 8t4d by Molmil
MD65 N332-GT5 SOSIP in complex with RM_N332_08 Fab and RM20A3 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MD65 N332-GT5 SOSIP gp120, ...
Authors:Ozorowski, G, Torres, J.L, Ward, A.B.
Deposit date:2023-06-09
Release date:2024-05-08
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates.
Science, 384, 2024
8T4B
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BU of 8t4b by Molmil
MD65 N332-GT5 SOSIP in complex with RM_N332_32 Fab and RM20A3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, MD65 N332-GT5 SOSIP gp120, MD65 N332-GT5 SOSIP gp41, ...
Authors:Ozorowski, G, Torres, J.L, Ward, A.B.
Deposit date:2023-06-08
Release date:2024-05-08
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates.
Science, 384, 2024
8RBX
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BU of 8rbx by Molmil
Structure of Integrator-PP2A bound to a paused RNA polymerase II-DSIF-NELF-nucleosome complex
Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ...
Authors:Fianu, I, Ochmann, M, Walshe, J.L, Cramer, P.
Deposit date:2023-12-05
Release date:2024-02-07
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis of Integrator-dependent RNA polymerase II termination.
Nature, 629, 2024
8RC4
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BU of 8rc4 by Molmil
Structure of Integrator-PP2A complex
Descriptor: DSS1, Integrator complex subunit 1, Integrator complex subunit 10, ...
Authors:Fianu, I, Ochmann, M, Walshe, J.L, Cramer, P.
Deposit date:2023-12-06
Release date:2024-02-07
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis of Integrator-dependent RNA polymerase II termination.
Nature, 629, 2024
1I72
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BU of 1i72 by Molmil
HUMAN S-ADENOSYLMETHIONINE DECARBOXYLASE WITH COVALENTLY BOUND PYRUVOYL GROUP AND COVALENTLY BOUND 5'-DEOXY-5'-[N-METHYL-N-(2-AMINOOXYETHYL) AMINO]ADENOSINE
Descriptor: 1,4-DIAMINOBUTANE, 5'-DEOXY-5'-[N-METHYL-N-(2-AMINOOXYETHYL) AMINO]ADENOSINE, S-ADENOSYLMETHIONINE DECARBOXYLASE ALPHA CHAIN, ...
Authors:Tolbert, W.D, Ekstrom, J.L, Mathews, I.I, Secrist III, J.A, Pegg, A.E, Ealick, S.E.
Deposit date:2001-03-07
Release date:2001-08-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structural basis for substrate specificity and inhibition of human S-adenosylmethionine decarboxylase.
Biochemistry, 40, 2001

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