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PDB: 2408 件

8K0R
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The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge state
分子名称: DNA, MAGNESIUM ION, RNA (542-MER)
著者Zhu, H.Z, Liu, J.J.G.
登録日2023-07-10
公開日2024-05-15
実験手法ELECTRON MICROSCOPY (2.65 Å)
主引用文献Hydrolytic endonucleolytic ribozyme (HYER) is programmable for sequence-specific DNA cleavage.
Science, 383, 2024
4FEO
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BU of 4feo by Molmil
Crystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine
分子名称: 9H-PURINE-2,6-DIAMINE, COBALT HEXAMMINE(III), U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain
著者Stoddard, C.D, Trausch, J.J, Widmann, J, Marcano, J, Knight, R, Batey, R.T.
登録日2012-05-30
公開日2013-02-27
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Nucleotides Adjacent to the Ligand-Binding Pocket are Linked to Activity Tuning in the Purine Riboswitch.
J.Mol.Biol., 425, 2013
8K0Q
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The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric pre-cleavage state
分子名称: DNA, MAGNESIUM ION, RNA (542-MER)
著者Zhu, H.Z, Liu, J.J.G.
登録日2023-07-10
公開日2024-05-15
実験手法ELECTRON MICROSCOPY (3.14 Å)
主引用文献Hydrolytic endonucleolytic ribozyme (HYER) is programmable for sequence-specific DNA cleavage.
Science, 383, 2024
8K0P
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BU of 8k0p by Molmil
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric apo state
分子名称: MAGNESIUM ION, RNA (542-MER)
著者Zhu, H.Z, Liu, J.J.G.
登録日2023-07-10
公開日2024-05-15
実験手法ELECTRON MICROSCOPY (2.99 Å)
主引用文献Hydrolytic endonucleolytic ribozyme (HYER) is programmable for sequence-specific DNA cleavage.
Science, 383, 2024
6DNV
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BU of 6dnv by Molmil
Crystal Structure of Neisseria meningitidis DsbD n-terminal domain in the reduced form
分子名称: SULFATE ION, Thiol:disulfide interchange protein DsbD
著者Smith, R.P, Heras, B, Paxman, J.J.
登録日2018-06-08
公開日2018-09-12
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.603 Å)
主引用文献Structural and biochemical insights into the disulfide reductase mechanism of DsbD, an essential enzyme for neisserial pathogens.
J. Biol. Chem., 293, 2018
8JR5
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BU of 8jr5 by Molmil
Crystal structure of Hendra Virus attachment(G) glycoprotein mutant S586N
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein G
著者Li, Y.H, Huang, X.Y, Xu, J.J, Chen, W.
登録日2023-06-16
公開日2024-06-19
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Crystal structure of Hendra Virus attachment (G) glycoprotein mutant S586N
To Be Published
6D8Z
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BU of 6d8z by Molmil
Crystal Structure of the C-terminal Guanine Nucleotide Exchange Factor Module of Human Trio
分子名称: Triple functional domain protein
著者Bandekar, S, Tesmer, J.J.
登録日2018-04-27
公開日2019-02-20
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structure of the C-terminal guanine nucleotide exchange factor module of Trio in an autoinhibited conformation reveals its oncogenic potential.
Sci Signal, 12, 2019
5GR8
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BU of 5gr8 by Molmil
Crystal structure of PEPR1-AtPEP1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Elicitor peptide 1, ...
著者Chai, J.J, Tang, J.
登録日2016-08-08
公開日2016-12-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.587 Å)
主引用文献Structural basis for recognition of an endogenous peptide by the plant receptor kinase PEPR1
Cell Res., 25, 2015
8JR3
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BU of 8jr3 by Molmil
Crystal structure of Hendra Virus attachment(G) glycoprotein mutant S586N in complex with neutralizing antibody 14F8
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Li, Y.H, Huang, X.Y, Xu, J.J, Chen, W.
登録日2023-06-16
公開日2024-06-19
実験手法X-RAY DIFFRACTION (3.22 Å)
主引用文献Crystal structure of Hendra Virus attachment (G) glycoprotein mutant S586N in complex with neutralizing antibody 14F8
To Be Published
6D6T
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BU of 6d6t by Molmil
Human GABA-A receptor alpha1-beta2-gamma2 subtype in complex with GABA and flumazenil, conformation B
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, GAMMA-AMINO-BUTANOIC ACID, ...
著者Zhu, S, Noviello, C.M, Teng, J, Walsh Jr, R.M, Kim, J.J, Hibbs, R.E.
登録日2018-04-22
公開日2018-06-27
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (3.86 Å)
主引用文献Structure of a human synaptic GABAAreceptor.
Nature, 559, 2018
5GR9
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BU of 5gr9 by Molmil
Crystal structure of PXY-TDIF/CLE41
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Leucine-rich repeat receptor-like protein kinase TDR, TDIF/CLE41
著者Chai, J.J, Zhang, H.Q.
登録日2016-08-08
公開日2016-11-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.767 Å)
主引用文献Crystal structure of PXY-TDIF complex reveals a conserved recognition mechanism among CLE peptide-receptor pairs
Cell Res., 26, 2016
7Z18
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BU of 7z18 by Molmil
E. coli C-P lyase bound to a PhnK ABC dimer and ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase, Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG, ...
著者Amstrup, S.K, Sofos, N, Karlsen, J.L, Skjerning, R.B, Boesen, T, Enghild, J.J, Hove-Jensen, B, Brodersen, D.E.
登録日2022-02-24
公開日2022-05-25
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (1.98 Å)
主引用文献Structural remodelling of the carbon-phosphorus lyase machinery by a dual ABC ATPase.
Nat Commun, 14, 2023
7Z19
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BU of 7z19 by Molmil
E. coli C-P lyase bound to a single PhnK ABC domain
分子名称: Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase, Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG, Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH, ...
著者Amstrup, S.K, Sofos, N, Karlsen, J.L, Skjerning, R.B, Boesen, T, Enghild, J.J, Hove-Jensen, B, Brodersen, D.E.
登録日2022-02-24
公開日2022-05-25
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (2.57 Å)
主引用文献Structural remodelling of the carbon-phosphorus lyase machinery by a dual ABC ATPase.
Nat Commun, 14, 2023
7Z17
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BU of 7z17 by Molmil
E. coli C-P lyase bound to a PhnK ABC dimer in an open conformation
分子名称: Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase, Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG, Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH, ...
著者Amstrup, S.K, Sofos, N, Karlsen, J.L, Skjerning, R.B, Boesen, T, Enghild, J.J, Hove-Jensen, B, Brodersen, D.E.
登録日2022-02-24
公開日2022-05-25
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (2.57 Å)
主引用文献Structural remodelling of the carbon-phosphorus lyase machinery by a dual ABC ATPase.
Nat Commun, 14, 2023
4FEN
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BU of 4fen by Molmil
Crystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine
分子名称: A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain, ACETATE ION, COBALT HEXAMMINE(III), ...
著者Stoddard, C.D, Trausch, J.J, Widmann, J, Marcano, J, Knight, R, Batey, R.T.
登録日2012-05-30
公開日2013-02-27
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Nucleotides Adjacent to the Ligand-Binding Pocket are Linked to Activity Tuning in the Purine Riboswitch.
J.Mol.Biol., 425, 2013
7Z15
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BU of 7z15 by Molmil
E. coli C-P lyase bound to a PhnK/PhnL dual ABC dimer and ADP + Pi
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase, ...
著者Amstrup, S.K, Sofos, N, Karlsen, J.L, Skjerning, R.B, Boesen, T, Enghild, J.J, Hove-Jensen, B, Brodersen, D.E.
登録日2022-02-24
公開日2022-06-22
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (1.93 Å)
主引用文献Structural remodelling of the carbon-phosphorus lyase machinery by a dual ABC ATPase.
Nat Commun, 14, 2023
7Z16
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BU of 7z16 by Molmil
E. coli C-P lyase bound to PhnK/PhnL dual ABC dimer with AMPPNP and PhnK E171Q mutation
分子名称: Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase, Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH, Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI, ...
著者Amstrup, S.K, Sofus, N, Karlsen, J.L, Skjerning, R.B, Boesen, T, Enghild, J.J, Hove-Jensen, B, Brodersen, D.E.
登録日2022-02-24
公開日2022-06-22
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (2.09 Å)
主引用文献Structural remodelling of the carbon-phosphorus lyase machinery by a dual ABC ATPase.
Nat Commun, 14, 2023
7ZDD
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BU of 7zdd by Molmil
Crystal structure of TRIM33 PHD-Bromodomain isoform B in complex with H3K10ac histone peptide.
分子名称: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase TRIM33, Histone H3.X, ...
著者Caria, S, Duclos, S, Crespillo, S, Errey, J, Barker, J.J.
登録日2022-03-29
公開日2022-06-29
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.625 Å)
主引用文献Identification of Histone Peptide Binding Specificity and Small-Molecule Ligands for the TRIM33 alpha and TRIM33 beta Bromodomains.
Acs Chem.Biol., 17, 2022
4FL4
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BU of 4fl4 by Molmil
Scaffoldin conformation and dynamics revealed by a ternary complex from the Clostridium thermocellum cellulosome
分子名称: CALCIUM ION, Cellulosome anchoring protein cohesin region, Glycoside hydrolase family 9, ...
著者Currie, M.A, Adams, J.J, Faucher, F, Bayer, E.A, Jia, Z, Smith, S.P, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
登録日2012-06-14
公開日2012-06-27
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Scaffoldin Conformation and Dynamics Revealed by a Ternary Complex from the Clostridium thermocellum Cellulosome.
J.Biol.Chem., 287, 2012
2BF1
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BU of 2bf1 by Molmil
Structure of an unliganded and fully-glycosylated SIV gp120 envelope glycoprotein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Chen, B, Vogan, E.M, Gong, H, Skehel, J.J, Wiley, D.C, Harrison, S.C.
登録日2004-12-02
公開日2005-02-17
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Structure of an Unliganded Simian Immunodeficiency Virus Gp120 Core
Nature, 433, 2005
4FUP
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BU of 4fup by Molmil
Structural basis for Zn2+-dependent intercellular adhesion in staphylococcal biofilms
分子名称: Accumulation associated protein, ZINC ION
著者Conrady, D.G, Wilson, J.J, Herr, A.B.
登録日2012-06-28
公開日2013-01-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献Structural basis for Zn2+-dependent intercellular adhesion in staphylococcal biofilms.
Proc.Natl.Acad.Sci.USA, 110, 2013
5HNG
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BU of 5hng by Molmil
DISCOVERY OF NOVEL 7-AZAINDOLES AS PDK1 INHIBITORS
分子名称: 3-phosphoinositide-dependent protein kinase 1, 6-methoxy-2-(1H-pyrazol-5-yl)-1H-benzimidazole, SULFATE ION
著者Wucherer-Plietker, M, Esdar, C, Knoechel, T, Hillertz, P, Heinrich, T, Buchstaller, H.P, Greiner, H, Dorsch, D, Calderini, M, Bruge, D, Mueller, T.J.J, Graedler, U.
登録日2016-01-18
公開日2016-06-08
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献Discovery of novel 7-azaindoles as PDK1 inhibitors.
Bioorg.Med.Chem.Lett., 26, 2016
4G84
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BU of 4g84 by Molmil
Crystal structure of human HisRS
分子名称: CHLORIDE ION, Histidine--tRNA ligase, cytoplasmic, ...
著者Wei, Z, Wu, J, Zhou, J.J, Yang, X.-L, Zhang, M, Schimmel, P.
登録日2012-07-21
公開日2012-09-26
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Internally Deleted Human tRNA Synthetase Suggests Evolutionary Pressure for Repurposing.
Structure, 20, 2012
5HHF
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BU of 5hhf by Molmil
Crystal structure of Aspergillus fumigatus UDP-Galactopyranose mutase mutant H63A with covalent FAD-Galactopyranose and bound UDP
分子名称: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, MESO-ERYTHRITOL, SULFATE ION, ...
著者Tanner, J.J.
登録日2016-01-10
公開日2016-02-17
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献In Crystallo Capture of a Covalent Intermediate in the UDP-Galactopyranose Mutase Reaction.
Biochemistry, 55, 2016
6DPS
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Crystal Structure of Neisseria meningitidis DsbD n-terminal domain in the oxidised form
分子名称: Thiol:disulfide interchange protein DsbD, ZINC ION
著者Heras, B, Smith, R.P, Paxman, J.J.
登録日2018-06-09
公開日2018-09-12
最終更新日2018-11-07
実験手法X-RAY DIFFRACTION (2.556 Å)
主引用文献Structural and biochemical insights into the disulfide reductase mechanism of DsbD, an essential enzyme for neisserial pathogens.
J. Biol. Chem., 293, 2018

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件を2024-08-21に公開中

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