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PDB: 2437 results

2X6Y
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Tailspike protein mutant D339A of E.coli bacteriophage HK620 in complex with hexasaccharide
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, SODIUM ION, TAIL SPIKE PROTEIN, ...
Authors:Lorenzen, N.K, Mueller, J.J, Heinemann, U, Seckler, R, Barbirz, S.
Deposit date:2010-02-22
Release date:2011-03-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Single Amino Acid Exchange in Bacteriophage Hk620 Tailspike Protein Results in Thousand-Fold Increase of its Oligosaccharide Affinity.
Glycobiology, 23, 2013
1SPP
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THE CRYSTAL STRUCTURES OF TWO MEMBERS OF THE SPERMADHESIN FAMILY REVEAL THE FOLDING OF THE CUB DOMAIN
Descriptor: MAJOR SEMINAL PLASMA GLYCOPROTEIN PSP-I, MAJOR SEMINAL PLASMA GLYCOPROTEIN PSP-II
Authors:Romero, A, Romao, M.J, Varela, P.F, Kolln, I, Dias, J.M, Carvalho, A.L, Sanz, L, Topfer-Petersen, E, Calvete, J.J.
Deposit date:1997-06-19
Release date:1998-06-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The crystal structures of two spermadhesins reveal the CUB domain fold.
Nat.Struct.Biol., 4, 1997
2X85
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Tailspike protein of E. coli bacteriophage HK620 in complex with hexasaccharide
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, SODIUM ION, TAILSPIKE PROTEIN HK620, ...
Authors:Lorenzen, N.K, Mueller, J.J, Heinemann, U, Seckler, R, Barbirz, S.
Deposit date:2010-03-05
Release date:2011-03-23
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Single Amino Acid Exchange in Bacteriophage Hk620 Tailspike Protein Results in Thousand-Fold Increase of its Oligosaccharide Affinity.
Glycobiology, 23, 2013
3AIY
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R6 HUMAN INSULIN HEXAMER (SYMMETRIC), NMR, REFINED AVERAGE STRUCTURE
Descriptor: PHENOL, PROTEIN (INSULIN)
Authors:O'Donoghue, S.I, Chang, X, Abseher, R, Nilges, M, Led, J.J.
Deposit date:1998-12-29
Release date:2000-02-28
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:Unraveling the symmetry ambiguity in a hexamer: calculation of the R6 human insulin structure.
J.Biomol.NMR, 16, 2000
2X6X
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Tailspike protein mutant D339N of E.coli bacteriophage HK620 in complex with hexasaccharide
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, TAILSPIKE PROTEIN HK620, alpha-L-rhamnopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)]alpha-D-galactopyranose
Authors:Lorenzen, N.K, Mueller, J.J, Heinemann, U, Seckler, R, Barbirz, S.
Deposit date:2010-02-22
Release date:2011-03-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Single Amino Acid Exchange in Bacteriophage Hk620 Tailspike Protein Results in Thousand-Fold Increase of its Oligosaccharide Affinity.
Glycobiology, 23, 2013
4DMX
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Cathepsin K inhibitor
Descriptor: (1R,2R)-N-(1-cyanocyclopropyl)-2-{[4-(4-fluorophenyl)piperazin-1-yl]carbonyl}cyclohexanecarboxamide, Cathepsin K, GLYCEROL
Authors:Dossetter, A.G, Beeley, H, Bowyer, J, Cook, C.R, Crawford, J.J, Finlayson, J.E, Heron, N.M, Heyes, C, Highton, A.J, Hudson, J.A, Kenny, P.W, Martin, S, MacFaul, P.A, McGuire, T.M, Gutierrez, P.M, Morley, A.D, Morris, J.J, Page, K.M, Rosenbrier Ribeiro, L, Sawney, H, Steinbacher, S, Krapp, S, Jestel, A, Smith, C, Vickers, M.
Deposit date:2012-02-08
Release date:2012-07-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:(1R,2R)-N-(1-cyanocyclopropyl)-2-(6-methoxy-1,3,4,5-tetrahydropyrido[4,3-b]indole-2-carbonyl)cyclohexanecarboxamide (AZD4996): a potent and highly selective cathepsin K inhibitor for the treatment of osteoarthritis.
J.Med.Chem., 55, 2012
4DMY
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Cathepsin K inhibitor
Descriptor: (1R,2R)-N-(1-cyanocyclopropyl)-2-[(8-fluoro-1,3,4,5-tetrahydro-2H-pyrido[4,3-b]indol-2-yl)carbonyl]cyclohexanecarboxamide, Cathepsin K, GLYCEROL, ...
Authors:Dossetter, A.G, Beeley, H, Bowyer, J, Cook, C.R, Crawford, J.J, Finlayson, J.E, Heron, N.M, Heyes, C, Highton, A.J, Hudson, J.A, Kenny, P.W, Martin, S, MacFaul, P.A, McGuire, T.M, Gutierrez, P.M, Morley, A.D, Morris, J.J, Page, K.M, Rosenbrier Ribeiro, L, Sawney, H, Steinbacher, S, Krapp, S, Jestel, A, Smith, C, Vickers, M.
Deposit date:2012-02-08
Release date:2012-07-11
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:(1R,2R)-N-(1-cyanocyclopropyl)-2-(6-methoxy-1,3,4,5-tetrahydropyrido[4,3-b]indole-2-carbonyl)cyclohexanecarboxamide (AZD4996): a potent and highly selective cathepsin K inhibitor for the treatment of osteoarthritis.
J.Med.Chem., 55, 2012
1MU7
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Crystal Structure of a Human Tyrosyl-DNA Phosphodiesterase (Tdp1)-Tungstate Complex
Descriptor: GLYCEROL, TUNGSTATE(VI)ION, Tyrosyl-DNA Phosphodiesterase
Authors:Davies, D.R, Interthal, H, Champoux, J.J, Hol, W.G.J.
Deposit date:2002-09-23
Release date:2003-01-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Insights Into Substrate Binding and Catalytic Mechanism of Human Tyrosyl-DNA Phosphodiesterase (Tdp1) from Vanadate- and Tungstate-Inhibited Structures
J.Mol.Biol., 324, 2003
1MLD
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BU of 1mld by Molmil
REFINED STRUCTURE OF MITOCHONDRIAL MALATE DEHYDROGENASE FROM PORCINE HEART AND THE CONSENSUS STRUCTURE FOR DICARBOXYLIC ACID OXIDOREDUCTASES
Descriptor: CITRIC ACID, MALATE DEHYDROGENASE
Authors:Gleason, W.B, Fu, Z, Birktoft, J.J, Banaszak, L.J.
Deposit date:1994-01-24
Release date:1995-01-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Refined crystal structure of mitochondrial malate dehydrogenase from porcine heart and the consensus structure for dicarboxylic acid oxidoreductases.
Biochemistry, 33, 1994
1HPG
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A glutamic acid specific serine protease utilizes a novel histidine triad in substrate binding
Descriptor: BOC-ALA-ALA-PRO-GLU PEPTIDE, Glutamic acid specific protease
Authors:Nienaber, V.L, Birktoft, J.J.
Deposit date:1993-04-28
Release date:1995-07-10
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A glutamic acid specific serine protease utilizes a novel histidine triad in substrate binding.
Biochemistry, 32, 1993
5FSL
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MTH1 substrate recognition: Complex with a methylaminopurinone
Descriptor: 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE, 9-METHYL-2-(METHYLAMINO)-1H-PURIN-6-ONE, SULFATE ION
Authors:Nissink, J.W.M, Bista, M, Breed, J, Carter, N, Embrey, K, Read, J, Phillips, C, Winter, J.J.
Deposit date:2016-01-06
Release date:2016-07-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Mth1 Substrate Recognition--an Example of Specific Promiscuity.
Plos One, 11, 2016
4B8E
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BU of 4b8e by Molmil
PRY-SPRY domain of Trim25
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, E3 UBIQUITIN/ISG15 LIGASE TRIM25
Authors:Kershaw, N.J, D'Cruz, A.A, Nicola, N.A, Nicholson, S.E, Babon, J.J.
Deposit date:2012-08-27
Release date:2013-09-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.779 Å)
Cite:Crystal Structure of the Trim25 B30.2 (Pryspry) Domain: A Key Component of Antiviral Signaling.
Biochem.J., 456, 2013
3BRD
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BU of 3brd by Molmil
CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, P212121
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3'), DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3'), ...
Authors:Wilson, J.J, Kovall, R.A.
Deposit date:2007-12-21
Release date:2008-04-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:RAM-induced Allostery Facilitates Assembly of a Notch Pathway Active Transcription Complex.
J.Biol.Chem., 283, 2008
3BW9
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BU of 3bw9 by Molmil
Crystal Structure of HLA B*3508 in complex with a HCMV 12-mer peptide from the pp65 protein
Descriptor: Beta-2-microglobulin, CPS peptide from 65 kDa lower matrix phosphoprotein, HLA class I histocompatibility antigen, ...
Authors:Wynn, K.K, Marland, Z, Cooper, L, Silins, S.L, Gras, S, Archbold, J.K, Tynan, F.E, Miles, J.J, McCluskey, J, Burrows, S.R, Rossjohn, J, Khanna, R.
Deposit date:2008-01-08
Release date:2008-04-22
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Impact of clonal competition for peptide-MHC complexes on the CD8+ T-cell repertoire selection in a persistent viral infection
Blood, 111, 2008
6LE0
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BU of 6le0 by Molmil
A nonspecific heme-binding cyclase catalyzes [4 + 2] cycloaddition during neoabyssomicin biosynthesis
Descriptor: AbmU
Authors:Ju, J.J.
Deposit date:2019-11-23
Release date:2020-11-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Nonspecific Heme-Binding Cyclase, AbmU, Catalyzes [4 + 2] Cycloaddition during Neoabyssomicin Biosynthesis.
Acs Omega, 5, 2020
1ICL
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BU of 1icl by Molmil
SOLUTION STRUCTURE OF DESIGNED BETA-SHEET MINI-PROTEIN TH1OX
Descriptor: TH1OX
Authors:Ottesen, J.J, Imperiali, B.
Deposit date:2001-04-02
Release date:2001-04-11
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:Design of a discretely folded mini-protein motif with predominantly beta-structure.
Nat.Struct.Biol., 8, 2001
3C99
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Structural Basis of Histone H4 Recognition by p55
Descriptor: CADMIUM ION, Chromatin assembly factor 1 p55 subunit
Authors:Song, J.J, Garlick, J.D, Kingston, R.E.
Deposit date:2008-02-15
Release date:2008-05-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis of histone H4 recognition by p55.
Genes Dev., 22, 2008
3C4W
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BU of 3c4w by Molmil
Crystal Structure of G protein coupled receptor kinase 1 bound to ATP and magnesium chloride at 2.7A
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Singh, P, Tesmer, J.J.G.
Deposit date:2008-01-30
Release date:2008-03-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures of rhodopsin kinase in different ligand states reveal key elements involved in G protein-coupled receptor kinase activation.
J.Biol.Chem., 283, 2008
1J7O
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BU of 1j7o by Molmil
Solution structure of Calcium-calmodulin N-terminal domain
Descriptor: CALCIUM ION, Calmodulin
Authors:Chou, J.J, Klee, C.B, Bax, A.
Deposit date:2001-05-17
Release date:2001-11-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of Ca(2+)-calmodulin reveals flexible hand-like properties of its domains.
Nat.Struct.Biol., 8, 2001
3BX2
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BU of 3bx2 by Molmil
Puf4 RNA binding domain bound to HO endonuclease RNA 3' UTR recognition sequence
Descriptor: HO endonuclease 3' UTR binding sequence, Protein PUF4, SODIUM ION, ...
Authors:Miller, M.T, Higgin, J.J, Hall, T.M.T.
Deposit date:2008-01-11
Release date:2008-03-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p
Nat.Struct.Mol.Biol., 15, 2008
3C4Z
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BU of 3c4z by Molmil
Crystal structure of G protein coupled receptor kinase 1 bound to ADP and magnesium chloride at 1.84A
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Singh, P, Tesmer, J.J.G.
Deposit date:2008-01-30
Release date:2008-03-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structures of rhodopsin kinase in different ligand states reveal key elements involved in G protein-coupled receptor kinase activation.
J.Biol.Chem., 283, 2008
3BX3
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BU of 3bx3 by Molmil
Puf4 T650C/C724R Mutant bound to Cox17 RNA 3' UTR recognition sequence
Descriptor: COX17 RNA target sequence, Protein PUF4, SULFATE ION
Authors:Miller, M.T, Higgin, J.J, Hall, T.M.T.
Deposit date:2008-01-11
Release date:2008-03-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p
Nat.Struct.Mol.Biol., 15, 2008
6MCC
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BU of 6mcc by Molmil
CryoEM structure of AcrIIA2 homolog in complex with CRISPR-Cas9
Descriptor: Anti-CRISPR AcrIIA2 Homolog, CRISPR-associated endonuclease Cas9, Single guide RNA (116-MER)
Authors:Jiang, F, Liu, J.J, Doudna, J.A.
Deposit date:2018-08-31
Release date:2019-01-16
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Temperature-Responsive Competitive Inhibition of CRISPR-Cas9.
Mol. Cell, 73, 2019
4O8A
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BU of 4o8a by Molmil
First structure of a proline utilization A proline dehydrogenase domain
Descriptor: (2S)-2-HYDROXYPROPANOIC ACID, Bifunctional protein PutA, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Tanner, J.J.
Deposit date:2013-12-26
Release date:2014-01-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the proline dehydrogenase domain of the multifunctional PutA flavoprotein.
Nat.Struct.Biol., 10, 2003
6M94
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Monophosphorylated pSer33 b-Catenin peptide bound to b-TrCP/Skp1 Complex
Descriptor: Catenin beta-1, DIMETHYL SULFOXIDE, F-box/WD repeat-containing protein 1A, ...
Authors:Simonetta, K.R, Clifton, M.C, Walter, R.L, Ranieri, G.M, Carter, J.J.
Deposit date:2018-08-22
Release date:2019-04-03
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Prospective discovery of small molecule enhancers of an E3 ligase-substrate interaction.
Nat Commun, 10, 2019

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