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PDB: 2437 results

2BKT
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crystal structure of renin-pf00257567 complex
Descriptor: 1-{4-[3-(2-METHOXY-BENZYLOXY)-PROPOXY]-PHENYL}-6-(1,2,,3,4-TETRAHYDRO-QUINOLIN-7-YLOXYMETHYL)-PIPERAZIN-2-ONE, RENIN
Authors:Powell, N.A, Clay, E.H, Holsworth, D.D, Edmunds, J.J, Bryant, J.W, Ryan, J.M, Jalaie, M, Zhang, E.
Deposit date:2005-02-18
Release date:2006-04-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Equipotent Activity in Both Enantiomers of a Series of Ketopiperazine-Based Renin Inhibitors
Bioorg.Med.Chem.Lett., 15, 2005
5OQ9
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BU of 5oq9 by Molmil
XFEL structure of the off state of a reversibly photoswitching fluorescent protein determined using the droplet on demand injection method
Descriptor: Green to red photoconvertible GFP-like protein EosFP
Authors:Hutchison, C.D.M, Cordon-Preciado, V, Morgan, R.M.L, van Thor, J.J.
Deposit date:2017-08-11
Release date:2017-12-06
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:X-ray Free Electron Laser Determination of Crystal Structures of Dark and Light States of a Reversibly Photoswitching Fluorescent Protein at Room Temperature.
Int J Mol Sci, 18, 2017
5TRN
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BU of 5trn by Molmil
Solution Structure of a DNA Dodecamer with 8-oxoguanine at the 4th position and 5-methylcytosine at the 9th position
Descriptor: DNA (5'-D(*CP*GP*CP*(8OG)P*AP*AP*TP*TP*(DMC)P*GP*CP*G)-3')
Authors:Hoppins, J.J, Gruber, D.R, Miears, H.L, Endutkin, A.V, Zharkov, D.O, Smirnov, S.L.
Deposit date:2016-10-26
Release date:2017-06-28
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation.
Nucleic Acids Res., 46, 2018
2BWP
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BU of 2bwp by Molmil
5-Aminolevulinate Synthase from Rhodobacter capsulatus in complex with glycine
Descriptor: 5-AMINOLEVULINATE SYNTHASE, ACETIC ACID, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]
Authors:Astner, I, Schulze, J.O, Van Den Heuvel, J.J, Jahn, D, Schubert, W.-D, Heinz, D.W.
Deposit date:2005-07-15
Release date:2005-09-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of 5-Aminolevulinate Synthase, the First Enzyme of Heme Biosynthesis, and its Link to Xlsa in Humans.
Embo J., 24, 2005
2BKS
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BU of 2bks by Molmil
crystal structure of Renin-PF00074777 complex
Descriptor: (6R)-6-({[1-(3-HYDROXYPROPYL)-1,7-DIHYDROQUINOLIN-7-YL]OXY}METHYL)-1-(4-{3-[(2-METHOXYBENZYL)OXY]PROPOXY}PHENYL)PIPERAZIN-2-ONE, Renin
Authors:Powell, N.A, Clay, E.H, Holsworth, D.D, Edmunds, J.J, Bryant, J.W, Ryan, J.M, Jalaie, M, Zhang, E.
Deposit date:2005-02-18
Release date:2006-04-05
Last modified:2021-07-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Equipotent Activity in Both Enantiomers of a Series of Ketopiperazine-Based Renin Inhibitors
Bioorg.Med.Chem.Lett., 15, 2005
8DKQ
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BU of 8dkq by Molmil
Minimal PutA proline dehydrogenase domain (design #2) complexed with 2-(Furan-2-yl)acetic acid
Descriptor: (furan-2-yl)acetic acid, Bifunctional protein PutA, DI(HYDROXYETHYL)ETHER, ...
Authors:Tanner, J.J, Bogner, A.N.
Deposit date:2022-07-05
Release date:2022-12-14
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structure-based engineering of minimal proline dehydrogenase domains for inhibitor discovery.
Protein Eng.Des.Sel., 35, 2022
5OMC
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BU of 5omc by Molmil
Crystal structure of K. lactis Ddc2 N-terminus in complex with S. cerevisiae Rfa1 (K45E mutant) N-OB domain
Descriptor: CHLORIDE ION, DNA damage checkpoint protein LCD1, Replication factor A protein 1
Authors:Deshpande, I, Seeber, A, Shimada, K, Keusch, J.J, Gut, H, Gasser, S.M.
Deposit date:2017-07-28
Release date:2017-10-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Structural Basis of Mec1-Ddc2-RPA Assembly and Activation on Single-Stranded DNA at Sites of Damage.
Mol. Cell, 68, 2017
8DKO
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BU of 8dko by Molmil
Minimal PutA proline dehydrogenase domain (design #1) complexed with S-(-)-tetrahydro-2-furoic acid
Descriptor: Bifunctional protein PutA, FLAVIN-ADENINE DINUCLEOTIDE, TETRAHYDROFURAN-2-CARBOXYLIC ACID
Authors:Tanner, J.J, Bogner, A.N.
Deposit date:2022-07-05
Release date:2022-12-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-based engineering of minimal proline dehydrogenase domains for inhibitor discovery.
Protein Eng.Des.Sel., 35, 2022
8BNY
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BU of 8bny by Molmil
Structure of the tetramerization domain of pLS20 conjugation repressor Rco
Descriptor: CHLORIDE ION, Immunity repressor protein
Authors:Bernardo, N, Crespo, I, Meijer, W.J.J, Boer, D.R.
Deposit date:2022-11-14
Release date:2023-04-19
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.429 Å)
Cite:A tetramerization domain in prokaryotic and eukaryotic transcription regulators homologous to p53.
Acta Crystallogr D Struct Biol, 79, 2023
8DKP
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Minimal PutA proline dehydrogenase domain (design #2) complexed with S-(-)-tetrahydro-2-furoic acid
Descriptor: Bifunctional protein PutA, FLAVIN-ADENINE DINUCLEOTIDE, TETRAHYDROFURAN-2-CARBOXYLIC ACID
Authors:Tanner, J.J, Bogner, A.N.
Deposit date:2022-07-05
Release date:2022-12-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Structure-based engineering of minimal proline dehydrogenase domains for inhibitor discovery.
Protein Eng.Des.Sel., 35, 2022
8F3D
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BU of 8f3d by Molmil
3-methylcrotonyl-CoA carboxylase in filament, beta-subunit centered
Descriptor: 3-methylcrotonyl-CoA carboxylase alpha-subunit, 3-methylcrotonyl-CoA carboxylase beta-subunit, 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL
Authors:Hu, J.J, Lee, J.K.J, Liu, Y.T, Yu, C, Huang, L, Afasizheva, I, Afasizhev, R, Zhou, Z.H.
Deposit date:2022-11-09
Release date:2023-01-11
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Discovery, structure, and function of filamentous 3-methylcrotonyl-CoA carboxylase.
Structure, 31, 2023
6XCO
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BU of 6xco by Molmil
Immune receptor complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CACODYLATE ION, GLYCEROL, ...
Authors:Tran, T.M, Faridi, P, Lim, J.J, Ting, T.Y, Onwukwe, G, Bhattacharjee, P, Jones, M.C, Tresoldi, E, Cameron, J.F, La-Gruta, L.N, Purcell, W.A, Mannering, I.S, Rossjohn, J, Reid, H.H.
Deposit date:2020-06-08
Release date:2021-07-14
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:T cell receptor recognition of hybrid insulin peptides bound to HLA-DQ8.
Nat Commun, 12, 2021
6XCP
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BU of 6xcp by Molmil
Immune receptor complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Hybrid insulin peptide, ...
Authors:Tran, T.M, Faridi, P, Lim, J.J, Ting, T.Y, Onwukwe, G, Bhattacharjee, P, Jones, M.C, Tresoldi, E, Cameron, J.F, La-Gruta, L.N, Purcell, W.A, Mannering, I.S, Rossjohn, J, Reid, H.H.
Deposit date:2020-06-08
Release date:2021-07-14
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:T cell receptor recognition of hybrid insulin peptides bound to HLA-DQ8.
Nat Commun, 12, 2021
6XC9
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BU of 6xc9 by Molmil
Immune receptor complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
Authors:Tran, T.M, Faridi, P, Lim, J.J, Ting, T.Y, Onwukwe, G, Bhattacharjee, P, Tresoldi, M.C.E, Cameron, J.F, La-Gruta, L.N, Purcell, W.A, Mannering, I.S, Rossjohn, J, Reid, H.H.
Deposit date:2020-06-08
Release date:2021-07-14
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:T cell receptor recognition of hybrid insulin peptides bound to HLA-DQ8.
Nat Commun, 12, 2021
2BE1
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BU of 2be1 by Molmil
Structure of the compact lumenal domain of yeast Ire1
Descriptor: Serine/threonine-protein kinase/endoribonuclease IRE1, peptide
Authors:Credle, J.J, Finer-Moore, J.S, Papa, F.R, Stroud, R.M, Walter, P.
Deposit date:2005-10-21
Release date:2005-12-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.983 Å)
Cite:Inaugural Article: On the mechanism of sensing unfolded protein in the endoplasmic reticulum
Proc.Natl.Acad.Sci.Usa, 102, 2005
2RD2
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BU of 2rd2 by Molmil
Glutaminyl-tRNA synthetase mutant C229R with bound analog 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE
Descriptor: 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE, Glutamine tRNA, Glutaminyl-tRNA synthetase, ...
Authors:Bullock, T.L, Perona, J.J.
Deposit date:2007-09-20
Release date:2008-01-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A rationally engineered misacylating aminoacyl-tRNA synthetase.
Proc.Natl.Acad.Sci.Usa, 105, 2008
5UZ1
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BU of 5uz1 by Molmil
Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 3rd position and 8-oxoguanine at the 10th position
Descriptor: DNA (5'-D(*CP*GP*(DMC)P*GP*AP*AP*TP*TP*CP*(8OG)P*CP*G)-3')
Authors:Gruber, D.R, Hoppins, J.J, Miears, H.L, Endutkin, A.V, Zharkov, D.O, Smirnov, S.L.
Deposit date:2017-02-24
Release date:2017-05-31
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation.
Nucleic Acids Res., 46, 2018
2BFW
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BU of 2bfw by Molmil
Structure of the C domain of glycogen synthase from Pyrococcus abyssi
Descriptor: ACETATE ION, GLGA GLYCOGEN SYNTHASE, SULFATE ION
Authors:Horcajada, C, Guinovart, J.J, Fita, I, Ferrer, J.C.
Deposit date:2004-12-15
Release date:2005-11-28
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of an Archaeal Glycogen Synthase: Insights Into Oligomerisation and Substrate Binding of Eukaryotic Glycogen Synthases.
J.Biol.Chem., 281, 2006
2BT6
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Ru(bpy)2(mbpy)-Modified Bovine Adrenodoxin
Descriptor: (4'-METHYL-2,2'BIPYRIDINE)BIS(2,2'-BIPYRIDINE), ADRENODOXIN 1, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Halavaty, A, Mueller, J.J, Contzen, J, Jung, C, Hannemann, F, Bernhardt, R, Galander, M, Lendzian, F, Heinemann, U.
Deposit date:2005-05-26
Release date:2006-01-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Light-Induced Reduction of Bovine Adrenodoxin Via the Covalently Bound Ruthenium(II) Bipyridyl Complex: Intramolecular Electron Transfer and Crystal Structure.
Biochemistry, 45, 2006
2VBE
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BU of 2vbe by Molmil
Tailspike protein of bacteriophage Sf6
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, MANGANESE (II) ION, ...
Authors:Barbirz, S, Mueller, J.J, Freiberg, A, Heinemann, U, Seckler, R.
Deposit date:2007-09-12
Release date:2008-04-22
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:An intersubunit active site between supercoiled parallel beta helices in the trimeric tailspike endorhamnosidase of Shigella flexneri Phage Sf6.
Structure, 16, 2008
8FEZ
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BU of 8fez by Molmil
Prefusion-stabilized SARS-CoV-2 spike protein
Descriptor: Spike glycoprotein
Authors:Gonzalez, K.J, Mousa, J.J, Strauch, E.M.
Deposit date:2022-12-07
Release date:2023-04-12
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.72 Å)
Cite:A general computational design strategy for stabilizing viral class I fusion proteins.
Nat Commun, 15, 2024
2CFH
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BU of 2cfh by Molmil
Structure of the Bet3-TPC6B core of TRAPP
Descriptor: PALMITIC ACID, TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3, TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B
Authors:Kummel, D, Muller, J.J, Roske, Y, Henke, N, Heinemann, U.
Deposit date:2006-02-21
Release date:2006-07-12
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the Bet3-Tpc6B Core of Trapp: Two Tpc6 Paralogs Form Trimeric Complexes with Bet3 and Mum2.
J.Mol.Biol., 361, 2006
2BIS
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BU of 2bis by Molmil
Structure of glycogen synthase from Pyrococcus abyssi
Descriptor: 1,4-DIETHYLENE DIOXIDE, GLGA GLYCOGEN SYNTHASE, GLYCEROL, ...
Authors:Horcajada, C, Guinovart, J.J, Fita, I, Ferrer, J.C.
Deposit date:2005-01-25
Release date:2005-11-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of an Archaeal Glycogen Synthase: Insights Into Oligomerisation and Substrate Binding of Eukaryotic Glycogen Synthases.
J.Biol.Chem., 281, 2006
2BID
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BU of 2bid by Molmil
HUMAN PRO-APOPTOTIC PROTEIN BID
Descriptor: PROTEIN (BID)
Authors:Chou, J.J, Li, H, Salvesen, G.S, Yuan, J, Wagner, G.
Deposit date:1999-01-27
Release date:2000-02-02
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of BID, an intracellular amplifier of apoptotic signaling.
Cell(Cambridge,Mass.), 96, 1999
2BWO
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5-Aminolevulinate Synthase from Rhodobacter capsulatus in complex with succinyl-CoA
Descriptor: 5-AMINOLEVULINATE SYNTHASE, PYRIDOXAL-5'-PHOSPHATE, SUCCINYL-COENZYME A
Authors:Astner, I, Schulze, J.O, van den Heuvel, J.J, Jahn, D, Schubert, W.-D, Heinz, D.W.
Deposit date:2005-07-15
Release date:2005-09-27
Last modified:2015-12-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of 5-Aminolevulinate Synthase, the First Enzyme of Heme Biosynthesis, and its Link to Xlsa in Humans.
Embo J., 24, 2005

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