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PDB: 2129 results

6OFE
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BU of 6ofe by Molmil
Helical reconstruction of Type III Secretion System Needle filament mutant-PrgI S49A
Descriptor: Protein PrgI
Authors:Guo, E.Z, Galan, J.E.
Deposit date:2019-03-29
Release date:2019-07-10
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.61 Å)
Cite:A polymorphic helix of a Salmonella needle protein relays signals defining distinct steps in type III secretion.
Plos Biol., 17, 2019
6OFG
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BU of 6ofg by Molmil
In vitro polymerized PrgI V67A filaments
Descriptor: Protein PrgI
Authors:Guo, E.Z, Galan, J.E.
Deposit date:2019-03-29
Release date:2019-07-10
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:A polymorphic helix of a Salmonella needle protein relays signals defining distinct steps in type III secretion.
Plos Biol., 17, 2019
1M3V
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BU of 1m3v by Molmil
FLIN4: Fusion of the LIM binding domain of Ldb1 and the N-terminal LIM domain of LMO4
Descriptor: ZINC ION, fusion of the LIM interacting domain of ldb1 and the N-terminal LIM domain of LMO4
Authors:Deane, J.E, Mackay, J.P, Kwan, A.H.Y, Sum, E.Y, Visvader, J.E, Matthews, J.M.
Deposit date:2002-06-30
Release date:2003-05-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis for the recognition of ldb1 by the N-terminal LIM domains of LMO2 and LMO4
EMBO J., 22, 2003
6OL8
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BU of 6ol8 by Molmil
Crystal structure of NDM-12 metallo-beta-lactamase in complex with hydrolyzed ampicillin
Descriptor: (2R,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, CHLORIDE ION, Metallo-beta-lactamase NDM-12, ...
Authors:Raczynska, J.E, Imiolczyk, B, Jaskolski, M.
Deposit date:2019-04-16
Release date:2020-04-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Flexible loops of New Delhi metallo-beta-lactamase modulate its activity towards different substrates.
Int.J.Biol.Macromol., 158, 2020
6OFH
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BU of 6ofh by Molmil
Structure of Salmonella type III secretion system needle filament
Descriptor: Protein PrgI
Authors:Guo, E.Z, Galan, J.E.
Deposit date:2019-03-29
Release date:2019-07-10
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:A polymorphic helix of a Salmonella needle protein relays signals defining distinct steps in type III secretion.
Plos Biol., 17, 2019
6OAC
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BU of 6oac by Molmil
PQR530 [(S)-4-(Difluoromethyl)-5-(4-(3-methylmorpholino)-6-morpholino-1,3,5-triazin-2-yl)pyridin-2-amine] bound to the PI3Ka catalytic subunit p110alpha
Descriptor: 4-(difluoromethyl)-5-{4-[(3S)-3-methylmorpholin-4-yl]-6-(morpholin-4-yl)-1,3,5-triazin-2-yl}pyridin-2-amine, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Burke, J.E, McPhail, J.A.
Deposit date:2019-03-15
Release date:2019-06-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:(S)-4-(Difluoromethyl)-5-(4-(3-methylmorpholino)-6-morpholino-1,3,5-triazin-2-yl)pyridin-2-amine (PQR530), a Potent, Orally Bioavailable, and Brain-Penetrable Dual Inhibitor of Class I PI3K and mTOR Kinase.
J.Med.Chem., 62, 2019
6OGO
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BU of 6ogo by Molmil
Crystal structure of NDM-9 metallo-beta-lactamase
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Raczynska, J.E, Imiolczyk, B, Jaskolski, M.
Deposit date:2019-04-03
Release date:2020-04-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Flexible loops of New Delhi metallo-beta-lactamase modulate its activity towards different substrates.
Int.J.Biol.Macromol., 158, 2020
2CK3
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BU of 2ck3 by Molmil
Azide inhibited bovine F1-ATPase
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL, ...
Authors:Bowler, M.W, Montgomery, M.G, Leslie, A.G.W, Walker, J.E.
Deposit date:2006-04-10
Release date:2006-05-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:How Azide Inhibits ATP Hydrolysis by the F-Atpases.
Proc.Natl.Acad.Sci.USA, 103, 2006
8QH6
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BU of 8qh6 by Molmil
Crystal structure of IpgC in complex with a follow-up compound based on J20
Descriptor: 3-azanyl-6-chloranyl-isoindol-1-one, CHLORIDE ION, Chaperone protein IpgC, ...
Authors:Wallbaum, J.E, Heine, A, Reuter, K.
Deposit date:2023-09-06
Release date:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallographic Fragment Screening on the Shigella Type III Secretion System Chaperone IpgC.
Acs Omega, 8, 2023
3AT1
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BU of 3at1 by Molmil
CRYSTAL STRUCTURES OF PHOSPHONOACETAMIDE LIGATED T AND PHOSPHONOACETAMIDE AND MALONATE LIGATED R STATES OF ASPARTATE CARBAMOYLTRANSFERASE AT 2.8-ANGSTROMS RESOLUTION AND NEUTRAL PH
Descriptor: ASPARTATE CARBAMOYLTRANSFERASE (T STATE), CATALYTIC CHAIN, ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN, ...
Authors:Gouaux, J.E, Lipscomb, W.N.
Deposit date:1989-09-22
Release date:1990-10-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of phosphonoacetamide ligated T and phosphonoacetamide and malonate ligated R states of aspartate carbamoyltransferase at 2.8-A resolution and neutral pH.
Biochemistry, 29, 1990
3C8E
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BU of 3c8e by Molmil
Crystal Structure Analysis of yghU from E. Coli
Descriptor: GLUTATHIONE, yghU, glutathione S-transferase homologue
Authors:Harp, J, Ladner, J.E, Schaab, M.R, Stourman, N.V, Armstrong, R.N.
Deposit date:2008-02-11
Release date:2009-02-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure and Function of YghU, a Nu-Class Glutathione Transferase Related to YfcG from Escherichia coli.
Biochemistry, 50, 2011
3CG5
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BU of 3cg5 by Molmil
Crystal Structure of the Covalent Adduct Formed between TB B-lactamase and Clavulanate
Descriptor: (2E)-3-[(4-hydroxy-2-oxobutyl)amino]prop-2-enal, Beta-lactamase, PHOSPHATE ION
Authors:Tremblay, L.W, Hugonnet, J.E, Blanchard, J.S.
Deposit date:2008-03-04
Release date:2008-05-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the covalent adduct formed between Mycobacterium tuberculosis beta-lactamase and clavulanate.
Biochemistry, 47, 2008
3BZN
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BU of 3bzn by Molmil
Crystal Structure of Open form of Menaquinone-Specific Isochorismate Synthase, MenF
Descriptor: MAGNESIUM ION, Menaquinone-specific isochorismate synthase, SULFATE ION
Authors:Parsons, J.F, Shi, K.M, Ladner, J.E.
Deposit date:2008-01-18
Release date:2008-05-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of isochorismate synthase in complex with magnesium.
Acta Crystallogr.,Sect.D, 64, 2008
3C8P
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BU of 3c8p by Molmil
X-ray structure of Viscotoxin A1 from Viscum album L.
Descriptor: Viscotoxin A1
Authors:Pal, A, Debreczeni, J.E, Sevvana, M, Gruene, T, Kahle, B, Zeeck, A, Sheldrick, G.M.
Deposit date:2008-02-13
Release date:2008-06-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structures of viscotoxins A1 and B2 from European mistletoe solved using native data alone
Acta Crystallogr.,Sect.D, 64, 2008
3D7J
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BU of 3d7j by Molmil
SCO6650, a 6-pyruvoyltetrahydropterin synthase homolog from Streptomyces coelicolor
Descriptor: CHLORIDE ION, SODIUM ION, Uncharacterized protein SCO6650
Authors:Spoonamore, J.E, Roberts, S.A, Heroux, A, Bandarian, V.
Deposit date:2008-05-21
Release date:2008-10-21
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of a 6-pyruvoyltetrahydropterin synthase homolog from Streptomyces coelicolor.
Acta Crystallogr.,Sect.F, 64, 2008
3CP6
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BU of 3cp6 by Molmil
Crystal structure of human farnesyl diphosphate synthase (T201A mutant) complexed with Mg and biphosphonate inhibitor
Descriptor: (4aS,7aR)-octahydro-1H-cyclopenta[b]pyridine-6,6-diylbis(phosphonic acid), Farnesyl pyrophosphate synthetase, MAGNESIUM ION
Authors:Pilka, E.S, Dunford, J.E, Guo, K, Pike, A.C.W, von Delft, F, Barnett, B.L, Ebetino, F.H, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Russell, R.G.G, Oppermann, U, Structural Genomics Consortium (SGC)
Deposit date:2008-03-31
Release date:2008-04-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Human farnesyl diphosphate synthase (T201A mutant) complexed with Mg and biphosphonate inhibitor.
To be Published
3DGG
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BU of 3dgg by Molmil
Crystal structure of FabOX108
Descriptor: FabOX108 Heavy Chain Fragment, FabOX108 Light Chain Fragment, MAGNESIUM ION
Authors:Ren, J, Nettleship, J.E, Owens, R.J, Oxford Protein Production Facility (OPPF)
Deposit date:2008-06-13
Release date:2008-08-12
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A pipeline for the production of antibody fragments for structural studies using transient expression in HEK 293T cells.
Protein Expr.Purif., 62, 2008
3DIF
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BU of 3dif by Molmil
Crystal structure of FabOX117
Descriptor: FabOX117 Heavy Chain Fragment, FabOX117 Light Chain Fragment
Authors:Nettleship, J.E, Ren, J, Owens, R.J, Oxford Protein Production Facility (OPPF)
Deposit date:2008-06-20
Release date:2008-08-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A pipeline for the production of antibody fragments for structural studies using transient expression in HEK 293T cells.
Protein Expr.Purif., 62, 2008
3CSY
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BU of 3csy by Molmil
Crystal structure of the trimeric prefusion Ebola virus glycoprotein in complex with a neutralizing antibody from a human survivor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein GP1, ...
Authors:Lee, J.E, Fusco, M.L, Hessell, A.J, Oswald, W.B, Burton, D.R, Saphire, E.O.
Deposit date:2008-04-10
Release date:2008-07-08
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structure of the Ebola virus glycoprotein bound to an antibody from a human survivor.
Nature, 454, 2008
3CLC
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BU of 3clc by Molmil
Crystal Structure of the Restriction-Modification Controller Protein C.Esp1396I Tetramer in Complex with its Natural 35 Base-Pair Operator
Descriptor: 35-MER, MAGNESIUM ION, Regulatory protein
Authors:McGeehan, J.E, Streeter, S.D, Thresh, S.J, Ball, N, Ravelli, R.B, Kneale, G.G.
Deposit date:2008-03-18
Release date:2008-07-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural analysis of the genetic switch that regulates the expression of restriction-modification genes.
Nucleic Acids Res., 36, 2008
3EZR
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BU of 3ezr by Molmil
CDK-2 with indazole inhibitor 17 bound at its active site
Descriptor: 3-methoxy-4-{3-[4-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-indazol-6-yl}aniline, Cell division protein kinase 2
Authors:Kiefer, J.R, Day, J.E, Caspers, N.L, Mathis, K.J, Kretzmer, K.K, Weinberg, R.A, Reitz, B.A, Stegeman, R.A, Trujillo, J.I, Huang, W, Thorarensen, A, Xing, L, Wrightstone, A, Christine, L, Compton, R, Li, X.
Deposit date:2008-10-23
Release date:2009-02-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:2-(6-Phenyl-1H-indazol-3-yl)-1H-benzo[d]imidazoles: Design and synthesis of a potent and isoform selective PKC-zeta inhibitor
Bioorg.Med.Chem.Lett., 19, 2009
3CR1
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BU of 3cr1 by Molmil
crystal structure of a minimal, mutant, all-RNA hairpin ribozyme (A38C, A-1OMA) grown from MgCl2
Descriptor: MAGNESIUM ION, RNA (5'-R(*UP*CP*CP*CP*(A2M)P*GP*UP*CP*CP*AP*CP*CP*G)-3'), RNA (5'-R(*UP*CP*GP*UP*GP*GP*UP*CP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3'), ...
Authors:Salter, J.D, Wedekind, J.E.
Deposit date:2008-04-04
Release date:2008-08-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural effects of nucleobase variations at key active site residue Ade38 in the hairpin ribozyme.
Rna, 14, 2008
3DOP
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BU of 3dop by Molmil
Crystal structure of 5beta-reductase (AKR1D1) in complex with NADP+ and 5beta-dihydrotestosterone, Resolution 2.00A
Descriptor: 3-oxo-5-beta-steroid 4-dehydrogenase, 5-beta-DIHYDROTESTOSTERONE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Di Costanzo, L, Drury, J.E, Penning, T.M, Christianson, D.W.
Deposit date:2008-07-05
Release date:2008-10-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and catalytic mechanism of human steroid 5beta-reductase (AKR1D1)
Mol.Cell.Endocrinol., 301, 2009
3CQS
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BU of 3cqs by Molmil
A 3'-OH, 2',5'-phosphodiester substitution in the hairpin ribozyme active site reveals similarities with protein ribonucleases
Descriptor: 13-mer substrate strand with 3'-OH, 2',5'-phosphodiester covalently linking 5th and 6th nucleotides, 19-mer ribozyme strand, ...
Authors:Torelli, A.T, Spitale, R.C, Krucinska, J, Wedekind, J.E.
Deposit date:2008-04-03
Release date:2008-05-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Shared traits on the reaction coordinates of ribonuclease and an RNA enzyme
Biochem.Biophys.Res.Commun., 371, 2008
3F5X
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BU of 3f5x by Molmil
CDK-2-Cyclin complex with indazole inhibitor 9 bound at its active site
Descriptor: 4-{3-[7-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-indazol-6-yl}aniline, Cell division protein kinase 2, Cyclin-A2, ...
Authors:Kiefer, J.R, Day, J.E, Caspers, N.L, Mathis, K.J, Kretzmer, K.K, Weinberg, R.A, Reitz, B.A, Stegeman, R.A, Trujillo, J.I, Huang, W, Thorarensen, A, Xing, L, Wrightstone, A, Christine, L, Compton, R, Li, X.
Deposit date:2008-11-04
Release date:2009-02-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:2-(6-Phenyl-1H-indazol-3-yl)-1H-benzo[d]imidazoles: Design and synthesis of a potent and isoform selective PKC-zeta inhibitor.
Bioorg.Med.Chem.Lett., 19, 2009

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