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PDB: 6634 results

4PGI
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Insights into Substrate and Metal Binding from the Crystal Structure of Cyanobacterial Aldehyde Deformylating Oxygenase with Substrate Analogs Bound
Descriptor: 1,2-ETHANEDIOL, 11-[2-(2-ethoxyethoxy)ethoxy]undecanal, Aldehyde decarbonylase, ...
Authors:Buer, B.C, Paul, B, Das, D, Stuckey, J.A, Marsh, E.N.G.
Deposit date:2014-05-02
Release date:2015-02-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Insights into substrate and metal binding from the crystal structure of cyanobacterial aldehyde deformylating oxygenase with substrate bound.
Acs Chem.Biol., 9, 2014
4PBH
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CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND BENZOIC ACID
Descriptor: BENZOIC ACID, TRAP dicarboxylate transporter, DctP subunit, ...
Authors:Vetting, M.W, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-04-12
Release date:2014-05-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015
1IN5
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THERMOGOTA MARITIMA RUVB A156S MUTANT
Descriptor: ADENOSINE-5'-DIPHOSPHATE, HOLLIDAY JUNCTION DNA HELICASE RUVB
Authors:Putnam, C.D, Clancy, S.B, Tsuruta, H, Gonzalez, S, Wetmur, J.G, Tainer, J.A.
Deposit date:2001-05-12
Release date:2001-08-08
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and mechanism of the RuvB Holliday junction branch migration motor.
J.Mol.Biol., 311, 2001
4PFB
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BU of 4pfb by Molmil
Crystal structure of a TRAP periplasmic solute binding protein from Fusobacterium nucleatun (FN1258, TARGET EFI-510120) with bound SN-glycerol-3-phosphate
Descriptor: C4-dicarboxylate-binding protein, IMIDAZOLE, SN-GLYCEROL-3-PHOSPHATE, ...
Authors:Vetting, M.W, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-04-28
Release date:2014-05-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015
1J8A
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BU of 1j8a by Molmil
CRYSTAL STRUCTURE OF BENZAMIDINE INHIBITED BOVINE PANCREATIC TRYPSIN AT 105K TO 1.21A RESOLUTION FROM LABORATORY SOURCE WITH HIGH NUMBER OF WATERS MODELLED
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BENZAMIDINE, CALCIUM ION, ...
Authors:Cuesta-Seijo, J.A, Garcia-Granda, S.
Deposit date:2001-05-21
Release date:2001-09-12
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Trypsin as a model for high resolution X-ray diffraction in proteins.
BOL.R.SOC.HIST.NAT.SEC.GEOL., 97, 2002
1II7
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BU of 1ii7 by Molmil
Crystal structure of P. furiosus Mre11 with manganese and dAMP
Descriptor: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, Mre11 nuclease, ...
Authors:Hopfner, K.-P, Karcher, A, Craig, L, Woo, T.T, Carney, J.P, Tainer, J.A.
Deposit date:2001-04-20
Release date:2001-05-30
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural biochemistry and interaction architecture of the DNA double-strand break repair Mre11 nuclease and Rad50-ATPase.
Cell(Cambridge,Mass.), 105, 2001
1IKJ
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BU of 1ikj by Molmil
1.27 A CRYSTAL STRUCTURE OF NITROPHORIN 4 FROM RHODNIUS PROLIXUS COMPLEXED WITH IMIDAZOLE
Descriptor: IMIDAZOLE, NITROPHORIN 4, PROTOPORPHYRIN IX CONTAINING FE
Authors:Roberts, S.A, Weichsel, A, Qui, Y, Shelnutt, J.A, Walker, F.A, Montfort, W.R.
Deposit date:2001-05-03
Release date:2001-10-03
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Ligand-induced heme ruffling and bent no geometry in ultra-high-resolution structures of nitrophorin 4.
Biochemistry, 40, 2001
4QP5
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Catalytic domain of the antimicrobial peptidase lysostaphin from Staphylococcus simulans crystallized in the presence of phosphate
Descriptor: GLYCEROL, Lysostaphin, PHOSPHATE ION, ...
Authors:Sabala, I, Jagielska, E, Bardelang, P.T, Czapinska, H, Dahms, S.O, Sharpe, J.A, James, R, Than, M.E, Thomas, N.R, Bochtler, M.
Deposit date:2014-06-22
Release date:2014-07-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Crystal structure of the antimicrobial peptidase lysostaphin from Staphylococcus simulans.
Febs J., 281, 2014
4Q60
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Crystal structure of a 4-hydroxyproline epimerase from Burkholderia Multivorans atcc 17616, target EFI-506586, open form, with bound pyrrole-2-carboxylate
Descriptor: GLYCEROL, PROLINE RACEMASE, PYRROLE-2-CARBOXYLATE
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Al Obaidi, N, Sojitra, S, Stead, M, Washington, E, Glenn, A.S, Chowdhury, S, Evans, B, Hammonds, J, Hillerich, B, Love, J, Seidel, R.D, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-04-18
Release date:2014-05-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:CRYSTAL STRUCTURE OF PROLINE RACEMASE Bmul_4447 FROM Burkholderia multivorans, TARGET EFI-506586
To be Published
1J7K
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THERMOTOGA MARITIMA RUVB P216G MUTANT
Descriptor: ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, COBALT (II) ION, ...
Authors:Putnam, C.D, Clancy, S.B, Tsuruta, H, Wetmur, J.G, Tainer, J.A.
Deposit date:2001-05-16
Release date:2001-08-08
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and mechanism of the RuvB Holliday junction branch migration motor.
J.Mol.Biol., 311, 2001
1J7R
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BU of 1j7r by Molmil
Solution structure and backbone dynamics of the defunct EF-hand domain of Calcium Vector Protein
Descriptor: Calcium Vector Protein
Authors:Theret, I, Baladi, S, Cox, J.A, Gallay, J, Sakamoto, H, Craescu, C.T.
Deposit date:2001-05-18
Release date:2001-06-06
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure and backbone dynamics of the defunct domain of calcium vector protein.
Biochemistry, 40, 2001
4QGK
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BU of 4qgk by Molmil
Structure of the Human Sjogren Larsson Syndrome enzyme fatty aldehyde dehydrogenase (FALDH)
Descriptor: Fatty aldehyde dehydrogenase
Authors:Zander, U, Keller, M, Marquez, J.A.
Deposit date:2014-05-23
Release date:2014-07-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A gatekeeper helix determines the substrate specificity of Sjogren-Larsson Syndrome enzyme fatty aldehyde dehydrogenase.
Nat Commun, 5, 2014
4QOH
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BU of 4qoh by Molmil
Crystal structure of fad quinone reductase 2 in complex with resveratrol at 1.6A
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, RESVERATROL, ...
Authors:Serriere, J, Boutin, J.A, Isabet, T, Antoine, M, Ferry, G.
Deposit date:2014-06-20
Release date:2015-07-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of fad quinone reductase 2 in complex with resveratrol at 1.6A
To be Published
1IHV
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BU of 1ihv by Molmil
SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN OF HIV-1 INTEGRASE, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: HIV-1 INTEGRASE
Authors:Clore, G.M, Lodi, P.J, Ernst, J.A, Gronenborn, A.M.
Deposit date:1995-05-12
Release date:1996-10-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the DNA binding domain of HIV-1 integrase.
Biochemistry, 34, 1995
4PX8
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BU of 4px8 by Molmil
Structure of P. vulgaris HigB toxin
Descriptor: CHLORIDE ION, Killer protein
Authors:Schureck, M.A, Dunkle, J.A, Maehigashi, T, Dunham, C.M.
Deposit date:2014-03-22
Release date:2015-10-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Defining the mRNA recognition signature of a bacterial toxin protein.
Proc.Natl.Acad.Sci.USA, 112, 2015
1IHW
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BU of 1ihw by Molmil
SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN OF HIV-1 INTEGRASE, NMR, 40 STRUCTURES
Descriptor: HIV-1 INTEGRASE
Authors:Clore, G.M, Lodi, P.J, Ernst, J.A, Gronenborn, A.M.
Deposit date:1995-05-12
Release date:1996-07-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the DNA binding domain of HIV-1 integrase.
Biochemistry, 34, 1995
4Q3Y
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BU of 4q3y by Molmil
Crystal structure of C. violaceum phenylalanine hydroxylase D139A mutation
Descriptor: COBALT (II) ION, Phenylalanine-4-hydroxylase
Authors:Ronau, J.A, Abu-Omar, M.M, Das, C.
Deposit date:2014-04-12
Release date:2015-02-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A conserved acidic residue in phenylalanine hydroxylase contributes to cofactor affinity and catalysis.
Biochemistry, 53, 2014
4Q9Q
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Crystal structure of an RNA aptamer bound to bromo-ligand analog in complex with Fab
Descriptor: (5Z)-5-(3-bromobenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one, Fab BL3-6, HEAVY CHAIN, ...
Authors:Huang, H, Suslov, N.B, Li, N.-S, Shelke, S.A, Evans, M.E, Koldobskaya, Y, Rice, P.A, Piccirilli, J.A.
Deposit date:2014-05-01
Release date:2014-06-18
Last modified:2017-07-26
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore.
Nat.Chem.Biol., 10, 2014
4PX1
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CRYSTAL STRUCTURE OF Maleylacetoacetate isomerase from Methylobacteriu extorquens AM1 WITH BOUND MALONATE (TARGET EFI-507068)
Descriptor: CHLORIDE ION, MALONIC ACID, Maleylacetoacetate isomerase (Glutathione S-transferase)
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Hillerich, B, Seidel, R.D, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Imker, H.J, Al Obaidi, N, Stead, M, Love, J, Gerlt, J.A, Armstrong, R.N, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-03-21
Release date:2014-04-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of glutathione s-transferase zeta from methylobacterium extorquens (TARGET EFI-507068)
To be Published
1JA8
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Kinetic Analysis of Product Inhibition in Human Manganese Superoxide Dismutase
Descriptor: MANGANESE (II) ION, Manganese Superoxide Dismutase, SULFATE ION
Authors:Hearn, A.S, Stroupe, M.E, Cabelli, D.E, Lepock, J.R, Tainer, J.A, Nick, H.S, Silverman, D.S.
Deposit date:2001-05-29
Release date:2001-06-06
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Kinetic analysis of product inhibition in human manganese superoxide dismutase.
Biochemistry, 40, 2001
1JB2
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CRYSTAL STRUCTURE OF NTF2 M84E MUTANT
Descriptor: NUCLEAR TRANSPORT FACTOR 2
Authors:Chaillan-Huntington, C, Butler, P.J, Huntington, J.A, Akin, D, Feldherr, C, Stewart, M.
Deposit date:2001-06-01
Release date:2002-03-13
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:NTF2 monomer-dimer equilibrium.
J.Mol.Biol., 314, 2001
1JBW
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FPGS-AMPPCP-folate complex
Descriptor: 5,10-METHYLENE-6-HYDROFOLIC ACID, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, FOLYLPOLYGLUTAMATE SYNTHASE, ...
Authors:Sun, X, Cross, J.A, Bognar, A.L, Baker, E.N, Smith, C.A.
Deposit date:2001-06-06
Release date:2001-09-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Folate-binding triggers the activation of folylpolyglutamate synthetase.
J.Mol.Biol., 310, 2001
1JVY
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Maltodextrin-binding protein variant D207C/A301GS/P316C with beta-mercaptoethanol mixed disulfides
Descriptor: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, maltodextrin-binding protein
Authors:Srinivasan, U, Iyer, G.H, Przybycien, T.A, Samsonoff, W.A, Bell, J.A.
Deposit date:2001-08-31
Release date:2001-09-12
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystine: Fibrous Biomolecular Material from Protein Crystals Cross-linked in a Specific Geometry
Protein Eng., 15, 2002
1JOU
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Crystal Structure of Native S195A Thrombin with an Unoccupied Active Site
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETIC ACID, GLYCEROL, ...
Authors:Huntington, J.A, Esmon, C.T.
Deposit date:2001-07-31
Release date:2001-08-10
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The molecular basis of thrombin allostery revealed by a 1.8A structure of the slow form
Structure, 11, 2003
1JQ0
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Mutation that destabilize the gp41 core: determinants for stabilizing the SIV/CPmac envelope glycoprotein complex. Mutant structure.
Descriptor: gp41 envelope protein
Authors:Liu, J, Wang, S, LaBranche, C.C, Hoxie, J.A, Lu, M.
Deposit date:2001-08-03
Release date:2002-04-24
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Mutations that destabilize the gp41 core are determinants for stabilizing the simian immunodeficiency virus-CPmac envelope glycoprotein complex.
J.Biol.Chem., 277, 2002

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