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PDB: 6651 件

8V2X
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Crystal Structure of the reconstruction of the worst case of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by bayesian inference
分子名称: Triosephosphate isomerase
著者Perez-Nino, J.A, Rodriguez-Romero, A, Guerra-Borrego, Y, Fernandez-Velasco, D.A.
登録日2023-11-24
公開日2024-09-04
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase.
Protein Sci., 33, 2024
8V09
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BU of 8v09 by Molmil
Crystal Structure of the reconstruction of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by bayesian inference with PGH
分子名称: ACETIC ACID, FORMIC ACID, PHOSPHOGLYCOLOHYDROXAMIC ACID, ...
著者Perez-Nino, J.A, Rodriguez-Romero, A, Guerra-Borrego, Y, Fernandez-Velasco, D.A.
登録日2023-11-17
公開日2024-09-04
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase.
Protein Sci., 33, 2024
8V2W
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Crystal Structure of the ancestral triosephosphate isomerase reconstruction of the last opisthokont common ancestor obtained by Bayesian inference
分子名称: GLYCEROL, Triosephosphate isomerase
著者Perez-Nino, J.A, Rodriguez-Romero, A, Guerra, Y, Fernandez-Velasco, D.A.
登録日2023-11-24
公開日2024-09-04
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase.
Protein Sci., 33, 2024
8TCO
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HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CS2it1p2_F7K Fab heavy chain, ...
著者Goldsmith, J.A, McLellan, J.S.
登録日2023-07-02
公開日2023-08-09
最終更新日2024-08-14
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Single-cell analysis of memory B cells from top neutralizers reveals multiple sites of vulnerability within HCMV Trimer and Pentamer.
Immunity, 56, 2023
2CW6
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Crystal Structure of Human HMG-CoA Lyase: Insights into Catalysis and the Molecular Basis for Hydroxymethylglutaric Aciduria
分子名称: 3-HYDROXYPENTANEDIOIC ACID, Hydroxymethylglutaryl-CoA lyase, mitochondrial, ...
著者Fu, Z, Runquist, J.A, Hunt, J.F, Miziorko, H.M, Kim, J.-J.P.
登録日2005-06-17
公開日2005-12-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of human 3-hydroxy-3-methylglutaryl-CoA Lyase: insights into catalysis and the molecular basis for hydroxymethylglutaric aciduria
J.Biol.Chem., 281, 2006
8T5X
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Probing the dissociation pathway of a kinetically labile transthyretin mutant (A25T)
分子名称: Transthyretin
著者Ferguson, J.A, Sun, X, Leach, B.I, Stanfield, R.L, Dyson, H.J, Wright, P.E.
登録日2023-06-14
公開日2023-08-02
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Probing the Dissociation Pathway of a Kinetically Labile Transthyretin Mutant.
J.Am.Chem.Soc., 146, 2024
6PRU
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Photoconvertible crystals of PixJ from Thermosynechococcus elongatus
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Burgie, E.S, Clinger, J.A, Miller, M.D, Phillips Jr, G.N, Vierstra, R.D.
登録日2019-07-11
公開日2019-12-18
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.539 Å)
主引用文献Photoreversible interconversion of a phytochrome photosensory module in the crystalline state.
Proc.Natl.Acad.Sci.USA, 117, 2020
8SPK
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Crystal structure of Antarctic PET-degrading enzyme
分子名称: Lipase 1, MALONATE ION
著者Furtado, A.A, Blazquez-Sanchez, P, Grinen, A, Vargas, J.A, Leonardo, D.A, Sculaccio, S.A, Pereira, H.M, Diez, B, Garratt, R.C, Ramirez-Sarmiento, C.A.
登録日2023-05-03
公開日2023-08-23
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Engineering the catalytic activity of an Antarctic PET-degrading enzyme by loop exchange.
Protein Sci., 32, 2023
6PQK
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Cryogenic crystal structure of barnase A43C/S80C bound to barstar C40A/S59C/A67C/C82A
分子名称: 1,2-ETHANEDIOL, Barstar, PHOSPHATE ION, ...
著者Caro, J.A, Djanto, V, Wand, A.J.
登録日2019-07-09
公開日2020-07-15
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Targeting conformational entropy to modulate binding affinity
To Be Published
8V0A
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BU of 8v0a by Molmil
Crystal Structure of the worst case of the reconstruction of the ancestral triosephosphate isomerase of the last opisthokont common ancestor obtained by maximum likelihood with PGH
分子名称: PHOSPHOGLYCOLOHYDROXAMIC ACID, Triosephosphate isomerase
著者Perez-Nino, J.A, Rodriguez-Romero, A, Guerra-Borrego, Y, Fernandez-Velasco, D.A.
登録日2023-11-17
公開日2024-09-04
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Stable monomers in the ancestral sequence reconstruction of the last opisthokont common ancestor of dimeric triosephosphate isomerase.
Protein Sci., 33, 2024
6P7N
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Cryo-EM structure of LbCas12a-crRNA: AcrVA4 (2:2 complex)
分子名称: Cas12a, MAGNESIUM ION, anti-CRISPR VA4, ...
著者Knott, G.J, Liu, J.J, Doudna, J.A.
登録日2019-06-06
公開日2019-08-21
最終更新日2023-08-16
実験手法ELECTRON MICROSCOPY (4.9 Å)
主引用文献Structural basis for AcrVA4 inhibition of specific CRISPR-Cas12a.
Elife, 8, 2019
2FQQ
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Crystal structure of human caspase-1 (Cys285->Ala, Cys362->Ala, Cys364->Ala, Cys397->Ala) in complex with 1-methyl-3-trifluoromethyl-1H-thieno[2,3-c]pyrazole-5-carboxylic acid (2-mercapto-ethyl)-amide
分子名称: 1-METHYL-3-TRIFLUOROMETHYL-1H-THIENO[2,3-C]PYRAZOLE-5-CARBOXYLIC ACID (2-MERCAPTO-ETHYL)-AMIDE, Caspase-1
著者Scheer, J.M, Wells, J.A, Romanowski, M.J.
登録日2006-01-18
公開日2006-05-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献A common allosteric site and mechanism in caspases
Proc.Natl.Acad.Sci.USA, 103, 2006
2FTC
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Structural Model for the Large Subunit of the Mammalian Mitochondrial Ribosome
分子名称: 39S ribosomal protein L11, mitochondrial, 39S ribosomal protein L12, ...
著者Mears, J.A, Sharma, M.R, Gutell, R.R, Richardson, P.E, Agrawal, R.K, Harvey, S.C.
登録日2006-01-24
公開日2006-04-11
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (12.1 Å)
主引用文献A Structural Model for the Large Subunit of the Mammalian Mitochondrial Ribosome
J.Mol.Biol., 358, 2006
2FWQ
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BU of 2fwq by Molmil
Reduced enolate chromophore intermediate for Y66H GFP variant
分子名称: Green fluorescent protein, MAGNESIUM ION
著者Barondeau, D.P, Tainer, J.A, Getzoff, E.D.
登録日2006-02-02
公開日2006-03-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural evidence for an enolate intermediate in GFP fluorophore biosynthesis.
J.Am.Chem.Soc., 128, 2006
3N5F
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BU of 3n5f by Molmil
Crystal Structure of L-N-carbamoylase from Geobacillus stearothermophilus CECT43
分子名称: CACODYLATE ION, COBALT (II) ION, ISOPROPYL ALCOHOL, ...
著者Garcia-Pino, A, Martinez-Rodriguez, S, Gavira, J.A.
登録日2010-05-25
公開日2011-05-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Mutational and structural analysis of L-N-carbamoylase reveals new insights into a peptidase m20/m25/m40 family member.
J.Bacteriol., 194, 2012
2FFL
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BU of 2ffl by Molmil
Crystal Structure of Dicer from Giardia intestinalis
分子名称: Dicer, MANGANESE (II) ION
著者Doudna, J.A, MacRae, I.J, Adams, P.D.
登録日2005-12-19
公開日2006-01-24
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.33 Å)
主引用文献Structural Basis of Double-Stranded RNA Processing by Dicer
Science, 311, 2006
2FLJ
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Fatty acid binding protein from locust flight muscle in complex with oleate
分子名称: Fatty acid-binding protein, OLEIC ACID
著者Luecke, C, Qiao, Y, van Moerkerk, H.T.B, Veerkamp, J.H, Hamilton, J.A.
登録日2006-01-06
公開日2006-05-23
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Fatty-acid-binding protein from the flight muscle of Locusta migratoria: evolutionary variations in fatty acid binding.
Biochemistry, 45, 2006
8UVT
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BU of 8uvt by Molmil
Structure of the insect gustatory receptor Gr9 from Bombyx mori
分子名称: Gustatory receptor
著者Gomes, J.V, Butterwick, J.A.
登録日2023-11-04
公開日2024-03-20
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献The molecular basis of sugar detection by an insect taste receptor.
Nature, 629, 2024
2FAT
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An anti-urokinase plasminogen activator receptor (UPAR) antibody: Crystal structure and binding epitope
分子名称: FAB ATN-615, heavy chain, light chain
著者Li, Y, Parry, G, Shi, X, Chen, L, Callahan, J.A, Mazar, A.P, Huang, M.
登録日2005-12-07
公開日2006-11-14
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献An anti-urokinase plasminogen activator receptor (uPAR) antibody: crystal structure and binding epitope
J.Mol.Biol., 365, 2007
2FCH
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Crystal Structure of Thioredoxin Mutant G74S
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Thioredoxin 1
著者Gavira, J.A, Perez-Jimenez, R, Ibarra-Molero, B, Sanchez-Ruiz, J.M.
登録日2005-12-12
公開日2005-12-27
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal Structure of Thioredoxin Mutant G74S
To be Published
8UVU
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Structure of the insect gustatory receptor Gr9 from Bombyx mori in complex with D-fructose
分子名称: Gustatory receptor, beta-D-fructofuranose, beta-D-fructopyranose
著者Gomes, J.V, Butterwick, J.A.
登録日2023-11-04
公開日2024-03-20
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献The molecular basis of sugar detection by an insect taste receptor.
Nature, 629, 2024
2FSY
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BU of 2fsy by Molmil
Bacteriophage HK97 Pepsin-treated Expansion Intermediate IV
分子名称: major capsid protein
著者Gan, L, Speir, J.A, Conway, J.F, Lander, G, Cheng, N, Firek, B.A, Hendrix, R.W, Duda, R.L, Liljas, L, Johnson, J.E.
登録日2006-01-23
公開日2006-02-07
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.8 Å)
主引用文献Capsid Conformational Sampling in HK97 Maturation Visualized by X-Ray Crystallography and Cryo-EM.
Structure, 14, 2006
3N37
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Ribonucleotide Reductase Dimanganese(II)-NrdF from Escherichia coli
分子名称: GLYCEROL, MANGANESE (II) ION, Ribonucleoside-diphosphate reductase 2 subunit beta
著者Boal, A.K, Cotruvo Jr, J.A, Stubbe, J, Rosenzweig, A.C.
登録日2010-05-19
公開日2010-08-18
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural basis for activation of class Ib ribonucleotide reductase.
Science, 329, 2010
2FZL
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Structure of C-terminal domain of Archaeoglobus fulgidus XPB
分子名称: DNA repair protein RAD25, XPB, ISOPROPYL ALCOHOL
著者Fan, L, Arvai, A.S, Tainer, J.A.
登録日2006-02-09
公開日2006-04-18
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Conserved XPB Core Structure and Motifs for DNA Unwinding: Implications for Pathway Selection of Transcription or Excision Repair
Mol.Cell, 22, 2006
2FWR
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Structure of Archaeoglobus Fulgidis XPB
分子名称: DNA repair protein RAD25, ISOPROPYL ALCOHOL, PHOSPHATE ION
著者Fan, L, Arvai, A.S, Tainer, J.A.
登録日2006-02-02
公開日2006-04-18
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Conserved XPB Core Structure and Motifs for DNA Unwinding: Implications for Pathway Selection of Transcription or Excision Repair
Mol.Cell, 22, 2006

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