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PDB: 6628 results

1G00
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ALTERNATION OF DNA AND SOLVENT LAYERS IN THE A FORM OF D(GGCGCC) OBTAINED BY ETHANOL CRYSTALLIZATION
Descriptor: 5'-D(*GP*GP*CP*GP*CP*C)-3'
Authors:Urpi, L, Navaza, J, Subirana, J.A.
Deposit date:2000-10-05
Release date:2001-02-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Alternation of DNA and solvent layers in the A form of d(GGCGCC) obtained by ethanol crystallization.
J.Biomol.Struct.Dyn., 18, 2000
3VKE
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Contribution of the first K-homology domain of poly(C)-binding protein 1 to its affinity and specificity for C-rich oligonucleotides
Descriptor: DNA (5'-D(P*AP*CP*CP*CP*CP*A)-3'), Poly(rC)-binding protein 1
Authors:Traore, D.A.K, Wilce, M.C.J, Wilce, J.A.
Deposit date:2011-11-15
Release date:2012-02-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Contribution of the first K-homology domain of poly(C)-binding protein 1 to its affinity and specificity for C-rich oligonucleotides
Nucleic Acids Res., 40, 2012
1GM8
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Crystal structures of penicillin acylase enzyme-substrate complexes: Structural insights into the catalytic mechanism
Descriptor: CALCIUM ION, N-[(2S,4S,6R)-2-(DIHYDROXYMETHYL)-4-HYDROXY-3,3-DIMETHYL-7-OXO-4LAMBDA~4~-THIA-1-AZABICYCLO[3.2.0]HEPT-6-YL]-2-PHENYLAC ETAMIDE, PENICILLIN G ACYLASE ALPHA SUBUNIT, ...
Authors:McVey, C.E, Walsh, M.A, Dodson, G.G, Wilson, K.S, Brannigan, J.A.
Deposit date:2001-09-11
Release date:2001-11-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of Penicillin Acylase Enzyme- Substrate Complexes: Structural Insights Into the Catalytic Mechanism
J.Mol.Biol., 313, 2001
6C3K
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Apo crystal structure of S. aureus penicillin binding protein 4 (PBP4) mutant (E183A, F241R)
Descriptor: CHLORIDE ION, Penicillin-binding protein 4, SODIUM ION, ...
Authors:Alexander, J.A.N, Strynadka, N.C.J.
Deposit date:2018-01-10
Release date:2018-11-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and kinetic analyses of penicillin-binding protein 4 (PBP4)-mediated antibiotic resistance inStaphylococcus aureus.
J. Biol. Chem., 293, 2018
3V5C
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Crystal structure of the mutant E234A of Galacturonate Dehydratase from GEOBACILLUS SP. complexed with Mg
Descriptor: DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, Mandelate racemase/muconate lactonizing protein
Authors:Fedorov, A.A, Fedorov, E.V, Groninger-Poe, F, Gerlt, J.A, Almo, S.C.
Deposit date:2011-12-16
Release date:2012-12-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Crystal structure of the mutant E234A of Galacturonate Dehydratase from GEOBACILLUS SP. complexed with Mg
To be Published
4E4J
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Crystal structure of arginine deiminase from Mycoplasma penetrans
Descriptor: Arginine deiminase, CHLORIDE ION
Authors:Benach, J, Gallego, P, Planell, R, Querol, E, Perez Pons, J.A, Reverter, D.
Deposit date:2012-03-13
Release date:2012-10-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Characterization of the Enzymes Composing the Arginine Deiminase Pathway in Mycoplasma penetrans.
Plos One, 7, 2012
3UXW
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Crystal Structures of an A-T-hook/DNA complex
Descriptor: A-T hook peptide, dodecamer DNA
Authors:Fonfria-Subiros, E, Acosta-Reyes, F.J, Saperas, N, Pous, J, Subirana, J.A, Campos, J.L.
Deposit date:2011-12-05
Release date:2012-05-23
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal structure of a complex of DNA with one AT-hook of HMGA1.
Plos One, 7, 2012
1G3V
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CRYSTAL STRUCTURE OF NICKEL-D[CGTGTACACG]2
Descriptor: 5'-D(*CP*GP*TP*GP*TP*AP*CP*AP*CP*G)-3', NICKEL (II) ION
Authors:Subirana, J.A, Abrescia, N.G.A.
Deposit date:2000-10-25
Release date:2002-01-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Nickel-guanine interactions in DNA: crystal structure of nickel-d[CGTGTACACG]2.
J.Biol.Inorg.Chem., 7, 2002
3UOT
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Crystal Structure of MDC1 FHA Domain in Complex with a Phosphorylated Peptide from the MDC1 N-terminus
Descriptor: Mediator of DNA damage checkpoint protein 1
Authors:Clapperton, J.A, Lloyd, J, Haire, L.F, Li, J, Smerdon, S.J.
Deposit date:2011-11-17
Release date:2011-12-28
Last modified:2012-07-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The molecular basis of ATM-dependent dimerization of the Mdc1 DNA damage checkpoint mediator.
Nucleic Acids Res., 40, 2012
1G5S
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CRYSTAL STRUCTURE OF HUMAN CYCLIN DEPENDENT KINASE 2 (CDK2) IN COMPLEX WITH THE INHIBITOR H717
Descriptor: 2-[TRANS-(4-AMINOCYCLOHEXYL)AMINO]-6-(BENZYL-AMINO)-9-CYCLOPENTYLPURINE, CELL DIVISION PROTEIN KINASE 2
Authors:Dreyer, M.K, Borcherding, D.R, Dumont, J.A, Peet, N.P, Tsay, J.T, Wright, P.S, Bitonti, A.J, Shen, J, Kim, S.-H.
Deposit date:2000-11-02
Release date:2001-11-02
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal structure of human cyclin-dependent kinase 2 in complex with the adenine-derived inhibitor H717.
J.Med.Chem., 44, 2001
3VC6
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Crystal structure of enolase Tbis_1083(TARGET EFI-502310) FROM Thermobispora bispora DSM 43833 complexed with magnesium and formate
Descriptor: FORMIC ACID, MAGNESIUM ION, Mandelate racemase/muconate lactonizing protein
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Hillerich, B, Seidel, R.D, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Zencheck, W.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2012-01-03
Release date:2012-02-01
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Crystal structure of enolase Tbis_1083 FROM Thermobispora bispora DSM 43833
To be Published
1GKF
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Crystal structures of penicillin acylase enzyme-substrate complexes: Structural insights into the catalytic mechanism
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, PENICILLIN G ACYLASE ALPHA SUBUNIT, ...
Authors:McVey, C.E, Walsh, M.A, Dodson, G.G, Wilson, K.S, Brannigan, J.A.
Deposit date:2001-08-13
Release date:2002-01-04
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Crystal Structures of Penicillin Acylase Enzyme- Substrate Complexes: Structural Insights Into the Catalytic Mechanism
J.Mol.Biol., 313, 2001
3VC5
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Crystal structure of enolase Tbis_1083(TARGET EFI-502310) FROM Thermobispora bispora DSM 43833 complexed with phosphate
Descriptor: Mandelate racemase/muconate lactonizing protein, PHOSPHATE ION
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Hillerich, B, Seidel, R.D, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Zencheck, W.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2012-01-03
Release date:2012-02-01
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of enolase Tbis_1083 FROM Thermobispora bispora DSM 43833
To be Published
3H79
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Crystal structure of Trypanosoma cruzi thioredoxin-like hypothetical protein Q4DV70
Descriptor: THIOCYANATE ION, Thioredoxin-like protein
Authors:Santos, C.R, Fessel, M.R, Vieira, L.C, Krieger, M.A, Goldenberg, S, Guimaraes, B.G, Zanchin, N.I.T, Barbosa, J.A.R.G.
Deposit date:2009-04-24
Release date:2009-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of Trypanosoma cruzi thioredoxin-like hypothetical protein Q4DV70
TO BE PUBLISHED
3VDG
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Crystal structure of enolase MSMEG_6132 (TARGET EFI-502282) from Mycobacterium smegmatis str. MC2 155 complexed with formate and acetate
Descriptor: ACETATE ION, CHLORIDE ION, FORMIC ACID, ...
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Hillerich, B, Seidel, R.D, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Zencheck, W.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2012-01-05
Release date:2012-01-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of enolase MSMEG_6132 FROM Mycobacterium smegmatis
To be Published
1GK9
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Crystal structures of penicillin acylase enzyme-substrate complexes: Structural insights into the catalytic mechanism
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, PENICILLIN G ACYLASE ALPHA SUBUNIT, ...
Authors:McVey, C.E, Walsh, M.A, Dodson, G.G, Wilson, K.S, Brannigan, J.A.
Deposit date:2001-08-10
Release date:2002-01-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal Structures of Penicillin Acylase Enzyme-Substrate Complexes: Structural Insights Into the Catalytic Mechanism
J.Mol.Biol., 313, 2001
3VFH
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BlaC E166A CDC-1 Acyl-Intermediate
Descriptor: (2R)-5-methylidene-2-{(1R)-2-oxo-1-[(phenylacetyl)amino]ethyl}-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid, Beta-lactamase, PHOSPHATE ION
Authors:Mire, J.A, Sacchettini, J.C, TB Structural Genomics Consortium (TBSGC)
Deposit date:2012-01-09
Release date:2012-09-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:BlaC-Specific Fluorogenic Probes for Rapid Tuberculosis Detection
To be Published
1FZJ
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MHC CLASS I NATURAL MUTANT H-2KBM1 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND VESICULAR STOMATITIS VIRUS NUCLEOPROTEIN
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Rudolph, M.G, Speir, J.A, Brunmark, A, Mattsson, N, Jackson, M.R, Peterson, P.A, Teyton, L, Wilson, I.A.
Deposit date:2000-10-03
Release date:2001-03-28
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structures of K(bm1) and K(bm8) reveal that subtle changes in the peptide environment impact thermostability and alloreactivity.
Immunity, 14, 2001
1IN7
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THERMOTOGA MARITIMA RUVB R170A
Descriptor: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, HOLLIDAY JUNCTION DNA HELICASE RUVB
Authors:Putnam, C.D, Clancy, S.B, Tsuruta, H, Wetmur, J.G, Tainer, J.A.
Deposit date:2001-05-12
Release date:2001-08-08
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and mechanism of the RuvB Holliday junction branch migration motor.
J.Mol.Biol., 311, 2001
1IN6
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THERMOTOGA MARITIMA RUVB K64R MUTANT
Descriptor: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, COBALT (II) ION, ...
Authors:Putnam, C.D, Clancy, S.B, Tsuruta, H, Wetmur, J.G, Tainer, J.A.
Deposit date:2001-05-12
Release date:2001-08-08
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and mechanism of the RuvB Holliday junction branch migration motor.
J.Mol.Biol., 311, 2001
3TOU
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Crystal structure of GLUTATHIONE TRANSFERASE (TARGET EFI-501058) from Ralstonia solanacearum GMI1000 with GSH bound
Descriptor: ACETATE ION, GLUTATHIONE, Glutathione s-transferase protein
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Zencheck, W.D, Hillerich, B, Seidel, R.D, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Imker, H.J, Armstrong, R.N, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2011-09-06
Release date:2011-09-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of GLUTATHIONE S-TRANSFERASE from Ralstonia solanacearum
To be Published
1J8A
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CRYSTAL STRUCTURE OF BENZAMIDINE INHIBITED BOVINE PANCREATIC TRYPSIN AT 105K TO 1.21A RESOLUTION FROM LABORATORY SOURCE WITH HIGH NUMBER OF WATERS MODELLED
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BENZAMIDINE, CALCIUM ION, ...
Authors:Cuesta-Seijo, J.A, Garcia-Granda, S.
Deposit date:2001-05-21
Release date:2001-09-12
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Trypsin as a model for high resolution X-ray diffraction in proteins.
BOL.R.SOC.HIST.NAT.SEC.GEOL., 97, 2002
3TVU
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Crystal Structure of the humanized carboxyltransferase domain of yeast Acetyl-coA caroxylase in complex with compound 3
Descriptor: 4-({4-[(2-methylquinolin-6-yl)methyl]piperidin-1-yl}carbonyl)-2-phenylquinoline, Acetyl-CoA carboxylase
Authors:Rajamohan, F, Marr, E, Reyes, A, Landro, J.A, Anderson, M.D, Corbett, J.W, Dirico, K.J, Harwood, J.H, Tu, M, Vajdos, F.F.
Deposit date:2011-09-20
Release date:2011-10-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure-guided Inhibitor Design for Human Acetyl-coenzyme A Carboxylase by Interspecies Active Site Conversion.
J.Biol.Chem., 286, 2011
1IN5
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THERMOGOTA MARITIMA RUVB A156S MUTANT
Descriptor: ADENOSINE-5'-DIPHOSPHATE, HOLLIDAY JUNCTION DNA HELICASE RUVB
Authors:Putnam, C.D, Clancy, S.B, Tsuruta, H, Gonzalez, S, Wetmur, J.G, Tainer, J.A.
Deposit date:2001-05-12
Release date:2001-08-08
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and mechanism of the RuvB Holliday junction branch migration motor.
J.Mol.Biol., 311, 2001
3TZ3
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Crystal Structure of the humanized carboxyltransferase domain of yeast Acetyl-coA caroxylase in complex with compound 2
Descriptor: 6-{[1-(anthracen-9-ylcarbonyl)piperidin-4-yl]methyl}-2-methylquinoline, Acetyl-CoA carboxylase
Authors:Rajamohan, F, Marr, E, Reyes, A, Landro, J.A, Anderson, M.D, Corbett, J.W, Dirico, K.J, Harwood, J.H, Tu, M, Vajdos, F.F.
Deposit date:2011-09-26
Release date:2011-10-19
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-guided Inhibitor Design for Human Acetyl-coenzyme A Carboxylase by Interspecies Active Site Conversion.
J.Biol.Chem., 286, 2011

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