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PDB: 42550 results

3FMP
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Crystal structure of the nucleoporin Nup214 in complex with the DEAD-box helicase Ddx19
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DDX19B, Nuclear pore complex protein Nup214
Authors:Napetschnig, J, Debler, E.W, Blobel, G, Hoelz, A.
Deposit date:2008-12-22
Release date:2009-05-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:Structural and functional analysis of the interaction between the nucleoporin Nup214 and the DEAD-box helicase Ddx19.
Proc.Natl.Acad.Sci.USA, 106, 2009
6BZ2
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BU of 6bz2 by Molmil
Crystal structure of wild-type HIV-1 protease with a novel HIV-1 inhibitor GRL-14213A of 6-5-5-ring fused crown-like tetrahydropyranofuran as the P2-ligand, a cyclopropylaminobenzothiazole as the P2'-ligand and 3,5-difluorophenylmethyl as the P1-ligand
Descriptor: (3S,3aR,5R,7aS,8S)-hexahydro-4H-3,5-methanofuro[2,3-b]pyran-8-yl [(2S,3R)-4-[{[2-(cyclopropylamino)-1,3-benzothiazol-6-yl]sulfonyl}(2-methylpropyl)amino]-1-(3,5-difluorophenyl)-3-hydroxybutan-2-yl]carbamate, ACETATE ION, CHLORIDE ION, ...
Authors:Wang, Y.-F, Agniswamy, J, Weber, I.T.
Deposit date:2017-12-22
Release date:2018-02-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Design of Highly Potent, Dual-Acting and Central-Nervous-System-Penetrating HIV-1 Protease Inhibitors with Excellent Potency against Multidrug-Resistant HIV-1 Variants.
ChemMedChem, 13, 2018
3FNJ
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BU of 3fnj by Molmil
Crystal structure of the full-length lp_1913 protein from Lactobacillus plantarum, Northeast Structural Genomics Consortium Target LpR140
Descriptor: protein lp_1913
Authors:Seetharaman, J, Chen, Y, Forouhar, F, Sahdev, S, Janjua, H, Xiao, R, Ciccosanti, C, Foote, E.L, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-12-25
Release date:2009-01-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of the full-length lp_1913 protein from Lactobacillus plantarum, Northeast Structural Genomics Consortium Target LpR140
To be Published
6GAY
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BU of 6gay by Molmil
A fast recovering full-length LOV protein (DsLOV) from the marine phototrophic bacterium Dinoroseobacter shibae (Dark state) - M49I mutant
Descriptor: FLAVIN MONONUCLEOTIDE, Putative blue-light photoreceptor, SULFATE ION
Authors:Granzin, J, Batra-Safferling, R, Roellen, K.
Deposit date:2018-04-13
Release date:2018-07-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Mechanistic Basis of the Fast Dark Recovery of the Short LOV Protein DsLOV from Dinoroseobacter shibae.
Biochemistry, 57, 2018
3FEQ
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BU of 3feq by Molmil
Crystal structure of uncharacterized protein eah89906
Descriptor: PUTATIVE AMIDOHYDROLASE, ZINC ION
Authors:Patskovsky, Y, Bonanno, J, Romero, R, Freeman, J, Lau, C, Smith, D, Bain, K, Wasserman, S.R, Raushel, F, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-11-30
Release date:2008-12-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Functional identification and structure determination of two novel prolidases from cog1228 in the amidohydrolase superfamily .
Biochemistry, 49, 2010
6BW6
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BU of 6bw6 by Molmil
Human GPT (DPAGT1) H129 variant in complex with tunicamycin
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, Tunicamycin, UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase
Authors:Yoo, J, Kuk, A.C.Y, Mashalidis, E.H, Lee, S.-Y.
Deposit date:2017-12-14
Release date:2018-02-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:GlcNAc-1-P-transferase-tunicamycin complex structure reveals basis for inhibition of N-glycosylation.
Nat. Struct. Mol. Biol., 25, 2018
6GB3
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BU of 6gb3 by Molmil
A fast recovering full-length LOV protein (DsLOV) from the marine phototrophic bacterium Dinoroseobacter shibae (Dark state) - M49S mutant
Descriptor: FLAVIN MONONUCLEOTIDE, Putative blue-light photoreceptor
Authors:Granzin, J, Batra-Safferling, R, Roellen, K.
Deposit date:2018-04-13
Release date:2018-07-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.752 Å)
Cite:Mechanistic Basis of the Fast Dark Recovery of the Short LOV Protein DsLOV from Dinoroseobacter shibae.
Biochemistry, 57, 2018
3FH6
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BU of 3fh6 by Molmil
Crystal structure of the resting state maltose transporter from E. coli
Descriptor: Maltose transport system permease protein malF, Maltose transport system permease protein malG, Maltose/maltodextrin import ATP-binding protein malK
Authors:Khare, D, Oldham, M.L, Orelle, C, Davidson, A.L, Chen, J.
Deposit date:2008-12-08
Release date:2009-03-03
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Alternating access in maltose transporter mediated by rigid-body rotations.
Mol.Cell, 33, 2009
3F4D
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BU of 3f4d by Molmil
Crystal structure of organophosphorus hydrolase from Geobacillus stearothermophilus strain 10
Descriptor: COBALT (II) ION, Organophosphorus hydrolase
Authors:Hawwa, R, Aikens, J, Turner, R.J, Santarsiero, B, Mesecar, A.
Deposit date:2008-10-31
Release date:2009-08-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structural basis for thermostability revealed through the identification and characterization of a highly thermostable phosphotriesterase-like lactonase from Geobacillus stearothermophilus.
Arch.Biochem.Biophys., 488, 2009
6BXB
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BU of 6bxb by Molmil
Crystal structure of an extended b3 integrin P33
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Chimera protein of Integrin beta-3 and Integrin alpha-L, ...
Authors:Zhou, D, Zhu, J.
Deposit date:2017-12-18
Release date:2018-08-01
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Structure of an extended beta3integrin.
Blood, 132, 2018
3F6M
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BU of 3f6m by Molmil
Crystal Structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF from Yersinia pestis
Descriptor: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Authors:Kim, Y, Maltseva, N, Stam, J, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2008-11-06
Release date:2008-11-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:Crystal Structure of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF from Yersinia pestis
To be Published
6BY7
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BU of 6by7 by Molmil
Folding DNA into a lipid-conjugated nano-barrel for controlled reconstitution of membrane proteins
Descriptor: DNA (26-MER), DNA (27-MER), DNA (29-MER), ...
Authors:Dong, Y, Chen, S, Zhang, S, Sodroski, J, Yang, Z, Liu, D, Mao, Y.
Deposit date:2017-12-20
Release date:2018-02-28
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (7.5 Å)
Cite:Folding DNA into a Lipid-Conjugated Nanobarrel for Controlled Reconstitution of Membrane Proteins.
Angew. Chem. Int. Ed. Engl., 57, 2018
3FJD
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BU of 3fjd by Molmil
Crystal structure of L44F/F132W mutant of Human acidic fibroblast growth factor
Descriptor: FORMIC ACID, Heparin-binding growth factor 1, SULFATE ION
Authors:Blaber, M, Lee, J.
Deposit date:2008-12-14
Release date:2009-10-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The interaction between thermodynamic stability and buried free cysteines in regulating the functional half-life of fibroblast growth factor-1.
J.Mol.Biol., 393, 2009
3FJJ
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BU of 3fjj by Molmil
Crystal structure of C83V mutant of Human acidic fibroblast growth factor
Descriptor: FORMIC ACID, Heparin-binding growth factor 1, SULFATE ION
Authors:Blaber, M, Lee, J.
Deposit date:2008-12-14
Release date:2009-10-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis of conserved cysteine in the fibroblast growth factor family: evidence for a vestigial half-cystine.
J.Mol.Biol., 393, 2009
6C5R
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BU of 6c5r by Molmil
Crystal structure of the soluble domain of the mitochondrial calcium uniporter
Descriptor: calcium uniporter
Authors:Fan, C, Fan, M, Fastman, N, Zhang, J, Feng, L.
Deposit date:2018-01-16
Release date:2018-07-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.09608316 Å)
Cite:X-ray and cryo-EM structures of the mitochondrial calcium uniporter.
Nature, 559, 2018
3FLE
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BU of 3fle by Molmil
SE_1780 protein of unknown function from Staphylococcus epidermidis.
Descriptor: SE_1780 protein
Authors:Osipiuk, J, Hatzos, C, Clancy, S, Kim, Y, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2008-12-18
Release date:2009-01-13
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.009 Å)
Cite:X-ray crystal structure of SE_1780 protein of unknown function from Staphylococcus epidermidis.
To be Published
6G0D
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BU of 6g0d by Molmil
BRD4 (BD1) in complex with APSC-derived ligands (e.g. LY294002)
Descriptor: 1,2-ETHANEDIOL, 2-MORPHOLIN-4-YL-7-PHENYL-4H-CHROMEN-4-ONE, Bromodomain-containing protein 4
Authors:Pretzel, J, Humbeck, L.
Deposit date:2018-03-18
Release date:2020-01-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.314 Å)
Cite:Discovery of an Unexpected Similarity in Ligand Binding Between BRD4 and PPARgamma
Chemrxiv, 2019
6G0F
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BU of 6g0f by Molmil
BRD4 (BD1) in complex with docking-derived ligand
Descriptor: (4~{R})-4-(5-bromanyl-2-fluoranyl-phenyl)-5,6,7-trimethoxy-3,4-dihydro-1~{H}-quinolin-2-one, 1,2-ETHANEDIOL, Bromodomain-containing protein 4
Authors:Pretzel, J, Humbeck, L.
Deposit date:2018-03-18
Release date:2020-01-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.618 Å)
Cite:Discovery of an Unexpected Similarity in Ligand Binding Between BRD4 and PPARgamma
Chemrxiv, 2019
6FNE
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BU of 6fne by Molmil
Structure of human Brag2 (Sec7-PH domains) with the inhibitor Bragsin bound to the PH domain
Descriptor: (2~{S})-6-methyl-5-nitro-2-(trifluoromethyl)-2,3-dihydrochromen-4-one, IQ motif and SEC7 domain-containing protein 1, NONAETHYLENE GLYCOL
Authors:Nawrotek, A, Zeghouf, M, Cherfils, J.
Deposit date:2018-02-03
Release date:2019-03-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:PH-domain-binding inhibitors of nucleotide exchange factor BRAG2 disrupt Arf GTPase signaling.
Nat.Chem.Biol., 15, 2019
6C1Y
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BU of 6c1y by Molmil
mbd of human mecp2 in complex with methylated DNA
Descriptor: 12-mer DNA, Methyl-CpG-binding protein 2, UNKNOWN ATOM OR ION
Authors:Liu, K, Bian, C, Tempel, W, Wernimont, A.K, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2018-01-05
Release date:2018-02-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Plasticity at the DNA recognition site of the MeCP2 mCG-binding domain.
Biochim Biophys Acta Gene Regul Mech, 1862, 2019
3FFO
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BU of 3ffo by Molmil
F17b-G lectin domain with bound GlcNAc(beta1-2)man
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-beta-D-mannopyranose, Adhesin, ...
Authors:Buts, L, De Boer, A, Olsson, J.D.M, Jonckheere, W, De Kerpel, M, De Genst, E, Guerardel, Y, Willaert, R, Wyns, L, Wuhrer, M, Oscarson, S, De Greve, H, Bouckaert, J.
Deposit date:2008-12-04
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Sampling of Glycan Interaction Profiles Reveals Mucosal Receptors for Fimbrial Adhesins of Enterotoxigenic Escherichia coli.
Biology (Basel), 2, 2013
3FGM
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BU of 3fgm by Molmil
Crystal structure of L44F/C83T/C117V/F132W mutant of Human acidic fibroblast growth factor
Descriptor: FORMIC ACID, Heparin-binding growth factor 1, SULFATE ION
Authors:Blaber, M, Lee, J.
Deposit date:2008-12-06
Release date:2009-10-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The interaction between thermodynamic stability and buried free cysteines in regulating the functional half-life of fibroblast growth factor-1.
J.Mol.Biol., 393, 2009
6C3P
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BU of 6c3p by Molmil
Cryo-EM structure of human KATP bound to ATP and ADP in propeller form
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP-binding cassette sub-family C member 8, ...
Authors:Lee, K.P.K, Chen, J, MacKinnon, R.
Deposit date:2018-01-10
Release date:2018-01-24
Method:ELECTRON MICROSCOPY (5.6 Å)
Cite:Molecular structure of human KATP in complex with ATP and ADP.
Elife, 6, 2017
3FH3
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Crystal structure of a putative ECF-type sigma factor negative effector from Bacillus anthracis str. Sterne
Descriptor: NICKEL (II) ION, putative ECF-type sigma factor negative effector
Authors:Nocek, B, Kim, Y, Joachimiak, G, Du, J, Gornicki, P, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2008-12-08
Release date:2009-01-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Crystal structure of a putative ECF-type sigma factor negative effector from Bacillus anthracis str. Sterne
To be Published
3F4K
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BU of 3f4k by Molmil
Crystal structure of a probable methyltransferase from Bacteroides thetaiotaomicron. Northeast Structural Genomics target BtR309.
Descriptor: Putative methyltransferase
Authors:Seetharaman, J, Lew, S, Wang, H, Janjua, H, Foote, E.L, Xiao, R, Nair, R, Everett, J.K, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-10-31
Release date:2008-11-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a probable methyltransferase from Bacteroides thetaiotaomicron. Northeast Structural Genomics target BtR309.
To be Published

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