Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 42507 results

6ZHI
DownloadVisualize
BU of 6zhi by Molmil
Structure of the Plasmodium falciparum Hsp70-x substrate binding domain in complex with hydrophobic peptide
Descriptor: ASN-ARG-LEU-LEU-LEU-THR-GLY, Heat shock protein 70
Authors:Schmidt, J, Vakonakis, I.
Deposit date:2020-06-23
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structure of the PfHsp70-x SBD
Acta Crystallographica Section F
6Z5B
DownloadVisualize
BU of 6z5b by Molmil
Crystal structure of haspin (GSG2) in complex with macrocycle ODS2003128
Descriptor: 6-(2-methoxyethoxy)-11,15-dimethyl-8-oxa-2,11,15,19,21,23-hexazatetracyclo[15.6.1.13,7.020,24]pentacosa-1(23),3(25),4,6,17,20(24),21-heptaen-10-one, DIMETHYL SULFOXIDE, Serine/threonine-protein kinase haspin
Authors:Chaikuad, A, Benderitter, P, Hoflack, J, Denis, A, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2020-05-26
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of haspin (GSG2) in complex with macrocycle ODS2003128
To Be Published
6ZJC
DownloadVisualize
BU of 6zjc by Molmil
Crystal structure of Equus ferus caballus glutathione transferase A3-3 in complex with glutathione and triethyltin
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GLUTATHIONE, Glutathione S-transferase, ...
Authors:Skerlova, J, Ismail, A, Lindstrom, H, Sjodin, B, Mannervik, B, Stenmark, P.
Deposit date:2020-06-28
Release date:2020-11-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and functional analysis of the inhibition of equine glutathione transferase A3-3 by organotin endocrine disrupting pollutants.
Environ Pollut, 268, 2021
3B6U
DownloadVisualize
BU of 3b6u by Molmil
Crystal structure of the motor domain of human kinesin family member 3B in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Kinesin-like protein KIF3B, MAGNESIUM ION, ...
Authors:Zhu, H, Shen, Y, Tempel, W, Landry, R, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2007-10-29
Release date:2007-11-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Motor domain of human kinesin family member 3B in complex with ADP.
To be Published
7R9J
DownloadVisualize
BU of 7r9j by Molmil
Methanococcus maripaludis chaperonin, open conformation 4
Descriptor: Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-06-29
Release date:2021-08-11
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (6.3 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
7R9I
DownloadVisualize
BU of 7r9i by Molmil
Methanococcus maripaludis chaperonin, open conformation 2
Descriptor: Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-06-29
Release date:2021-08-11
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (6.4 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
7R9K
DownloadVisualize
BU of 7r9k by Molmil
Methanococcus maripaludis chaperonin, closed conformation 4
Descriptor: Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-06-29
Release date:2021-08-11
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
7R9H
DownloadVisualize
BU of 7r9h by Molmil
Methanococcus maripaludis chaperonin, open conformation 2
Descriptor: Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-06-29
Release date:2021-08-11
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (6.3 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
7R9M
DownloadVisualize
BU of 7r9m by Molmil
Methanococcus maripaludis chaperonin, closed conformation 2
Descriptor: Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-06-29
Release date:2021-08-11
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
7R9E
DownloadVisualize
BU of 7r9e by Molmil
Methanococcus maripaludis chaperonin, open conformation 1
Descriptor: Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-06-29
Release date:2021-08-11
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
7ZQK
DownloadVisualize
BU of 7zqk by Molmil
Crystal structure of photosynthetic glyceraldehyde-3-phosphate dehydrogenase from Chlamydomonas reinhardtii (CrGAPA) complexed with NAD+
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Fermani, S, Zaffagnini, M, Lemaire, S.D, Falini, G, Fanti, S, Rossi, J.
Deposit date:2022-04-30
Release date:2022-07-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural snapshots of nitrosoglutathione binding and reactivity underlying S-nitrosylation of photosynthetic GAPDH.
Redox Biol, 54, 2022
7RAK
DownloadVisualize
BU of 7rak by Molmil
Methanococcus maripaludis chaperonin complex in open conformation
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-07-01
Release date:2021-08-11
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
7RSF
DownloadVisualize
BU of 7rsf by Molmil
Acetylornithine deacetylase from Escherichia coli
Descriptor: Acetylornithine deacetylase, CHLORIDE ION, GLYCEROL, ...
Authors:Osipiuk, J, Endres, M, Becker, D.P, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2021-08-11
Release date:2021-08-18
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Acetylornithine deacetylase from Escherichia coli
To Be Published
7R9O
DownloadVisualize
BU of 7r9o by Molmil
Methanococcus maripaludis chaperonin, closed conformation 1
Descriptor: Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-06-29
Release date:2021-08-11
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
7JMJ
DownloadVisualize
BU of 7jmj by Molmil
Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots - Frame 37 - State 5 (S5)
Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, ZINC ION, ...
Authors:Dashti, A, des Georges, A, Frank, J, Ourmazd, A.
Deposit date:2020-07-31
Release date:2020-08-12
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Retrieving functional pathways of biomolecules from single-particle snapshots.
Nat Commun, 11, 2020
6Z0V
DownloadVisualize
BU of 6z0v by Molmil
CryoEM structure of the Chikungunya virus nsP1 complex
Descriptor: Polyprotein P1234, ZINC ION
Authors:Reguera, J, Jones, R, Arranz-Avila, R.
Deposit date:2020-05-11
Release date:2020-10-14
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Capping pores of alphavirus nsP1 gate membranous viral replication factories.
Nature, 589, 2021
7R9U
DownloadVisualize
BU of 7r9u by Molmil
Methanococcus maripaludis chaperonin, closed conformation 3
Descriptor: Chaperonin
Authors:Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
Deposit date:2021-06-29
Release date:2021-08-11
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin.
Nat Commun, 12, 2021
7RBQ
DownloadVisualize
BU of 7rbq by Molmil
Co-crystal structure of human PRMT9 in complex with MT556 inhibitor
Descriptor: 1,2-ETHANEDIOL, 7-[5-S-(4-{[(4-ethylpyridin-3-yl)methyl]amino}butyl)-5-thio-beta-D-ribofuranosyl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine, Protein arginine N-methyltransferase 9, ...
Authors:Zeng, H, Dong, A, Hutchinson, A, Seitova, A, Li, Y, Gao, Y.D, Schneider, S, Siliphaivanh, P, Sloman, D, Nicholson, B, Fischer, C, Hicks, J, Brown, P.J, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2021-07-06
Release date:2021-08-11
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Co-crystal structure of human PRMT9 in complex with MT556 inhibitor
To Be Published
7RSK
DownloadVisualize
BU of 7rsk by Molmil
The crystal structure from microfluidic crystals of glycosyl hydrolase family 2 (GH2) member from Bacteroides cellulosilyticus
Descriptor: Glycosyl hydrolase family 2, sugar binding domain protein
Authors:Kim, Y, Nocek, B, Endres, M, Joachimiak, G, Johnson, J, Babnigg, G, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2021-08-11
Release date:2021-08-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The crystal structure from microfluidic crystals of glycosyl hydrolase family 2 (GH2) member from Bacteroides cellulosilyticus
To Be Published
2VDN
DownloadVisualize
BU of 2vdn by Molmil
Re-refinement of Integrin AlphaIIbBeta3 Headpiece Bound to Antagonist Eptifibatide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, EPTIFIBATIDE, ...
Authors:Springer, T.A, Zhu, J, Xiao, T.
Deposit date:2007-10-10
Release date:2008-09-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Basis for Distinctive Recognition of Fibrinogen Gammac Peptide by the Platelet Integrin Alphaiibbeta3.
J.Cell Biol., 182, 2008
7R7H
DownloadVisualize
BU of 7r7h by Molmil
Peptidomimetic nitrile warheads as SARS-CoV-2 3CL protease inhibitors
Descriptor: 3C-like proteinase, N-[(2S)-1-({(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide
Authors:Khan, M.B, Lu, J, Young, H.S, Lemieux, M.J.
Deposit date:2021-06-24
Release date:2021-09-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Peptidomimetic nitrile warheads as SARS-CoV-2 3CL protease inhibitors.
Rsc Med Chem, 12, 2021
6XCG
DownloadVisualize
BU of 6xcg by Molmil
Histone-lysine N-methyltransferase NSD2-PWWP1 with compound UNC6934
Descriptor: Histone-lysine N-methyltransferase NSD2, N-cyclopropyl-3-oxo-N-({4-[(pyrimidin-4-yl)carbamoyl]phenyl}methyl)-3,4-dihydro-2H-1,4-benzoxazine-7-carboxamide, UNKNOWN ATOM OR ION
Authors:Zhou, M.Q, Dong, A, Ingerman, L.A, Hanley, R.P, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2020-06-08
Release date:2020-07-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:A chemical probe targeting the PWWP domain alters NSD2 nucleolar localization.
Nat.Chem.Biol., 18, 2022
7JMI
DownloadVisualize
BU of 7jmi by Molmil
Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots - Frame 29 - State 3 (S3)
Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, ZINC ION, ...
Authors:Dashti, A, des Georges, A, Frank, J, Ourmazd, A.
Deposit date:2020-07-31
Release date:2020-08-12
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Retrieving functional pathways of biomolecules from single-particle snapshots.
Nat Commun, 11, 2020
7RS9
DownloadVisualize
BU of 7rs9 by Molmil
Crystal Structure of the ER-alpha Ligand-binding Domain (L372S, L536S) in complex with DMERI-25
Descriptor: (1S,2R,4S)-N-[4-(benzyloxy)phenyl]-5,6-bis(4-hydroxyphenyl)-N-(2,2,2-trifluoroethyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonamide, Estrogen receptor
Authors:Min, J, Nwachukwu, J.C, Min, C.K, Njeri, J.W, Srinivasan, S, Rangarajan, E.S, Nettles, C.C, Yan, S, Houtman, R, Griffin, P.R, Izard, T, Katzenellenbogen, B.S, Katzenellenbogen, J.A, Nettles, K.W.
Deposit date:2021-08-11
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Dual-mechanism estrogen receptor inhibitors.
Proc.Natl.Acad.Sci.USA, 118, 2021
7RSI
DownloadVisualize
BU of 7rsi by Molmil
The cryo-EM map of KIF18A bound to KIFBP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, KIF-binding protein, Kinesin-like protein KIF18A, ...
Authors:Tan, Z, Solon, A.L, Schutt, K.L, Jepsen, L, Haynes, S.E, Nesvizhskii, A.I, Sept, D, Stumpff, J, Ohi, R, Cianfrocco, M.A.
Deposit date:2021-08-11
Release date:2021-09-08
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Kinesin-binding protein remodels the kinesin motor to prevent microtubule binding.
Sci Adv, 7, 2021

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon