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PDB: 42550 results

1S05
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NMR-validated structural model for oxidized R.palustris cytochrome c556
Descriptor: Cytochrome c-556, HEME C
Authors:Bertini, I, Faraone-Mennella, J, Gray, H.B, Luchinat, C, Parigi, G, Winkler, J.R.
Deposit date:2003-12-30
Release date:2004-01-20
Last modified:2021-03-03
Method:SOLUTION NMR
Cite:NMR-validated structural model for oxidized Rhodopseudomonas palustris cytochrome c(556).
J.Biol.Inorg.Chem., 9, 2004
1S7A
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BU of 1s7a by Molmil
NMR structure of the La motif of human La protein
Descriptor: Lupus La protein
Authors:Alfano, C, Sanfelice, D, Babon, J, Kelly, G, Jacks, A, Curry, S, Conte, M.R.
Deposit date:2004-01-29
Release date:2004-04-06
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural analysis of cooperative RNA binding by the La motif and central RRM domain of human La protein.
Nat.Struct.Mol.Biol., 11, 2004
1S1K
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INFLUENCE OF GROOVE INTERACTIONS ON DNA HOLLIDAY JUNCTION FORMATION
Descriptor: 5'-D(*CP*CP*(1AP)P*GP*TP*AP*CP*TP*GP*G)-3', CALCIUM ION, SODIUM ION
Authors:Hays, F.A, Watson, J, Ho, P.S.
Deposit date:2004-01-06
Release date:2004-08-31
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Influence of minor groove substituents on the structure of DNA holliday junctions.
Biochemistry, 43, 2004
1SAQ
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Crystal Structure of the RNA octamer GIC(GA)GCC
Descriptor: 5'-R(*GP*IP*CP*GP*AP*GP*CP*C)-3'
Authors:Jang, S.B, Baeyens, K, Jeong, M.S, SantaLucia Jr, J, Turner, D, Holbrook, S.R.
Deposit date:2004-02-09
Release date:2004-05-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures of two RNA octamers containing tandem G.A base pairs.
Acta Crystallogr.,Sect.D, 60, 2004
1SAX
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Three-dimensional structure of s.aureus methicillin-resistance regulating transcriptional repressor meci in complex with 25-bp ds-DNA
Descriptor: 5'-d(CAAAATTACAACTGTAATATCGGAG)-3', 5'-d(GCTCCGATATTACAGTTGTAATTTT)-3', Methicillin resistance regulatory protein mecI, ...
Authors:Garcia-Castellanos, R, Mallorqui-Fernandez, G, Marrero, A, Potempa, J, Coll, M, Gomis-Ruth, F.X.
Deposit date:2004-02-09
Release date:2004-04-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:On the transcriptional regulation of methicillin resistance: MecI repressor in complex with its operator
J.Biol.Chem., 279, 2004
1SA9
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Crystal Structure of the RNA octamer GGCGAGCC
Descriptor: 5'-R(*GP*GP*CP*GP*AP*GP*CP*C)-3'
Authors:Jang, S.B, Baeyens, K, Jeong, M.S, SantaLucia Jr, J, Turner, D, Holbrook, S.R.
Deposit date:2004-02-09
Release date:2004-05-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Structures of two RNA octamers containing tandem G.A base pairs.
Acta Crystallogr.,Sect.D, 60, 2004
1SG3
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Structure of allantoicase
Descriptor: Allantoicase
Authors:Leulliot, N, Quevillon-Cheruel, S, Sorel, I, Graille, M, Meyer, P, Liger, D, Blondeau, K, Janin, J, van Tilbeurgh, H.
Deposit date:2004-02-23
Release date:2004-03-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Yeast Allantoicase Reveals a Repeated Jelly Roll Motif
J.Biol.Chem., 279, 2004
1VSG
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2.9 ANGSTROMS RESOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF A VARIANT SURFACE GLYCOPROTEIN FROM TRYPANOSOMA BRUCEI
Descriptor: VARIANT SURFACE GLYCOPROTEIN MITAT 1.2, alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Freymann, D, Down, J, Wiley, D.C.
Deposit date:1990-10-22
Release date:1992-01-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:2.9 A resolution structure of the N-terminal domain of a variant surface glycoprotein from Trypanosoma brucei.
J.Mol.Biol., 216, 1990
1SI7
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Structure of E. coli tRNA psi 13 pseudouridine synthase TruD
Descriptor: tRNA pseudouridine synthase D
Authors:Kaya, Y, Del Campo, M, Ofengand, J, Malhotra, A.
Deposit date:2004-02-27
Release date:2004-03-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of TruD, a novel pseudouridine synthase with a new protein fold
J.Biol.Chem., 279, 2004
1SML
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METALLO BETA LACTAMASE L1 FROM STENOTROPHOMONAS MALTOPHILIA
Descriptor: PROTEIN (PENICILLINASE), ZINC ION
Authors:Ullah, J.H, Walsh, T.R, Taylor, I.A, Emery, D.C, Verma, C.S, Gamblin, S.J, Spencer, J.
Deposit date:1998-09-22
Release date:1999-09-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The crystal structure of the L1 metallo-beta-lactamase from Stenotrophomonas maltophilia at 1.7 A resolution.
J.Mol.Biol., 284, 1998
1SPF
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BU of 1spf by Molmil
THE NMR STRUCTURE OF THE PULMONARY SURFACTANT-ASSOCIATED POLYPEPTIDE SP-C IN AN APOLAR SOLVENT CONTAINS A VALYL-RICH ALPHA-HELIX
Descriptor: PULMONARY SURFACTANT-ASSOCIATED POLYPEPTIDE C
Authors:Johansson, J, Szyperski, T, Curstedt, T, Wuthrich, K.
Deposit date:1994-09-26
Release date:1994-12-20
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The NMR structure of the pulmonary surfactant-associated polypeptide SP-C in an apolar solvent contains a valyl-rich alpha-helix.
Biochemistry, 33, 1994
5ZJZ
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Stapled-peptides tailored against initiation of translation
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE, Eukaryotic translation initiation factor 4 gamma 1, Eukaryotic translation initiation factor 4E
Authors:Lama, D, Liberator, A, Frosi, Y, Nakhle, J, Tsomia, N, Bashir, T, Lane, D.P, Brown, C.J, Verma, C.S, Auvin, S, Ciesielski, F, Uhring, M.
Deposit date:2018-03-22
Release date:2019-02-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structural insights reveal a recognition feature for tailoring hydrocarbon stapled-peptides against the eukaryotic translation initiation factor 4E protein.
Chem Sci, 10, 2019
5OVT
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Thiobacillus denitrificans BPH in complex with Epoxomicin
Descriptor: BPH, Epoxomicin, PHOSPHATE ION
Authors:Fuchs, A.C.D, Albrecht, R, Martin, J, Hartmann, M.D.
Deposit date:2017-08-29
Release date:2017-12-06
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural characterization of the bacterial proteasome homolog BPH reveals a tetradecameric double-ring complex with unique inner cavity properties.
J. Biol. Chem., 293, 2018
6DUB
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Crystal structure of a methyltransferase
Descriptor: Alpha N-terminal protein methyltransferase 1B, GLYCEROL, RCC1, ...
Authors:Dong, C, Tempel, W, Li, Y, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2018-06-20
Release date:2018-07-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:An asparagine/glycine switch governs product specificity of human N-terminal methyltransferase NTMT2.
Commun Biol, 1, 2018
6DW0
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Cryo-EM structure of the benzodiazepine-sensitive alpha1beta1gamma2S tri-heteromeric GABAA receptor in complex with GABA (Whole map)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GAMMA-AMINO-BUTANOIC ACID, Gamma-aminobutyric acid receptor subunit alpha-1,Gamma-aminobutyric acid receptor subunit alpha-1, ...
Authors:Phulera, S, Zhu, H, Yu, J, Yoshioka, C, Gouaux, E.
Deposit date:2018-06-26
Release date:2018-08-08
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structure of the benzodiazepine-sensitive alpha 1 beta 1 gamma 2S tri-heteromeric GABAAreceptor in complex with GABA.
Elife, 7, 2018
3DB6
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Crystal structure of an activated (Thr->Asp) Polo-like kinase 1 (Plk1) catalytic domain in complex with Compound 902
Descriptor: 1-[5-methyl-2-(trifluoromethyl)furan-3-yl]-3-[(2Z)-5-(2-{[6-(1H-1,2,4-triazol-3-ylamino)pyrimidin-4-yl]amino}ethyl)-1,3-thiazol-2(3H)-ylidene]urea, Polo-like kinase 1
Authors:Elling, R.A, Fucini, R.V, Zhu, J, Barr, K.J, Romanowski, M.J.
Deposit date:2008-05-30
Release date:2008-08-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure of the Brachydanio rerio Polo-like kinase 1 (Plk1) catalytic domain in complex with an extended inhibitor targeting the adaptive pocket of the enzyme.
Acta Crystallogr.,Sect.F, 64, 2008
5ZLV
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DNA polymerase IV - DNA ternary complex with 50mM MgCl2
Descriptor: DIPHOSPHATE, DNA polymerase IV, DTN1, ...
Authors:Kottur, J, Nair, D.T.
Deposit date:2018-03-29
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Pyrophosphate hydrolysis is an intrinsic and critical step of the DNA synthesis reaction
Nucleic Acids Res., 46, 2018
3DCD
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X-ray structure of the galactose mutarotase related enzyme Q5FKD7 from Lactobacillus acidophilus at the resolution 1.9A. Northeast Structural Genomics consortium target LaR33.
Descriptor: Galactose mutarotase related enzyme
Authors:Kuzin, A.P, Lew, S, Vorobiev, S.M, Seetharaman, J, Wang, H, Mao, L, Foote, E.L, Xiao, R, Nair, R, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-06-03
Release date:2008-07-29
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:X-ray structure of the galactose mutarotase related enzyme Q5FKD7 from Lactobacillus acidophilus at the resolution 1.9A. Northeast Structural Genomics consortium target LaR33. (CASP Target)
To be Published
3DGP
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BU of 3dgp by Molmil
Crystal Structure of the complex between Tfb5 and the C-terminal domain of Tfb2
Descriptor: RNA polymerase II transcription factor B subunit 2, RNA polymerase II transcription factor B subunit 5
Authors:Kainov, D.E, Cavarelli, J, Egly, J.M, Poterszman, A.
Deposit date:2008-06-14
Release date:2008-08-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for group A trichothiodystrophy
Nat.Struct.Mol.Biol., 15, 2008
5OPF
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BU of 5opf by Molmil
Structure of LPMO10B from from Micromonospora aurantiaca
Descriptor: COPPER (II) ION, Chitin-binding domain 3 protein
Authors:Forsberg, Z, Bissaro, B, Gullesen, J, Dalhus, B, Vaaje-Kolstad, G, Eijsink, V.G.H.
Deposit date:2017-08-09
Release date:2017-12-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.081 Å)
Cite:Structural determinants of bacterial lytic polysaccharide monooxygenase functionality.
J. Biol. Chem., 293, 2018
5ZMW
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Crystal structure of the E309Q mutant of SR Ca2+-ATPase in E2(TG)
Descriptor: DECYL-BETA-D-MALTOPYRANOSIDE, OCTANOIC ACID [3S-[3ALPHA, 3ABETA, ...
Authors:Ogawa, H, Hirata, A, Tsueda, J, Toyoshima, C.
Deposit date:2018-04-06
Release date:2019-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanism of the E2 to E1 transition in Ca2+pump revealed by crystal structures of gating residue mutants.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1CV4
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BU of 1cv4 by Molmil
T4 LYSOZYME MUTANT L118M
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, LYSOZYME
Authors:Gassner, N.C, Baase, W.A, Lindstrom, J, Lu, J, Matthews, B.W.
Deposit date:1999-08-22
Release date:1999-11-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Methionine and alanine substitutions show that the formation of wild-type-like structure in the carboxy-terminal domain of T4 lysozyme is a rate-limiting step in folding.
Biochemistry, 38, 1999
3DBY
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BU of 3dby by Molmil
Crystal structure of uncharacterized protein from Bacillus cereus G9241 (CSAP Target)
Descriptor: 1,2-ETHANEDIOL, FE (III) ION, uncharacterized protein
Authors:Ramagopal, U.A, Bonanno, J.B, Ozyurt, S, Freeman, J, Wasserman, S, Hu, S, Groshong, C, Rodgers, L, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-06-02
Release date:2008-07-29
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of uncharacterized protein from Bacillus cereus G9241
To be published
6D63
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The structure of AtzH: a little known member of the atrazine breakdown pathway
Descriptor: 3-oxopentanedioic acid, atzH
Authors:Peat, T.S, Newman, J, Scott, C, Esquirol, L.
Deposit date:2018-04-19
Release date:2018-11-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A novel decarboxylating amidohydrolase involved in avoiding metabolic dead ends during cyanuric acid catabolism in Pseudomonas sp. strain ADP.
PLoS ONE, 13, 2018
3DBL
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Structural Dissection of a Gating Mechanism Preventing Misactivation of Ubiquitin by NEDD8's E1 (APPBP1-UBA3Arg190wt-NEDD8Ala72Gln)
Descriptor: NEDD8, NEDD8-activating enzyme E1 catalytic subunit, NEDD8-activating enzyme E1 regulatory subunit, ...
Authors:Souphron, J, Schulman, B.A.
Deposit date:2008-06-01
Release date:2008-08-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural dissection of a gating mechanism preventing misactivation of ubiquitin by NEDD8's E1.
Biochemistry, 47, 2008

224004

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