3A25
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![BU of 3a25 by Molmil](/molmil-images/mine/3a25) | Crystal structure of P. horikoshii TYW2 in complex with AdoMet | Descriptor: | S-ADENOSYLMETHIONINE, Uncharacterized protein PH0793 | Authors: | Umitsu, M, Nishimasu, H, Ishitani, R, Nureki, O. | Deposit date: | 2009-04-28 | Release date: | 2009-09-15 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural basis of AdoMet-dependent aminocarboxypropyl transfer reaction catalyzed by tRNA-wybutosine synthesizing enzyme, TYW2 Proc.Natl.Acad.Sci.USA, 106, 2009
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3AL5
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![BU of 3al5 by Molmil](/molmil-images/mine/3al5) | Crystal structure of Human TYW5 | Descriptor: | JmjC domain-containing protein C2orf60, MAGNESIUM ION | Authors: | Kato, M, Araiso, Y, Ishitani, R, Nureki, O. | Deposit date: | 2010-07-26 | Release date: | 2010-11-24 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.503 Å) | Cite: | Crystal structure of a novel JmjC-domain-containing protein, TYW5, involved in tRNA modification. Nucleic Acids Res., 39, 2011
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3AM1
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![BU of 3am1 by Molmil](/molmil-images/mine/3am1) | Crystal structure of O-Phosphoseryl-tRNA kinase complexed with anticodon-stem/loop truncated tRNA(Sec) | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, ASL-truncated tRNA, L-seryl-tRNA(Sec) kinase, ... | Authors: | Araiso, Y, Ishitani, R, Nureki, O. | Deposit date: | 2010-08-11 | Release date: | 2010-12-29 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | C-terminal domain of archaeal O-phosphoseryl-tRNA kinase displays large-scale motion to bind the 7-bp D-stem of archaeal tRNA(Sec) Nucleic Acids Res., 39, 2011
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3AQP
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![BU of 3aqp by Molmil](/molmil-images/mine/3aqp) | Crystal structure of SecDF, a translocon-associated membrane protein, from Thermus thrmophilus | Descriptor: | Probable SecDF protein-export membrane protein | Authors: | Tsukazaki, T, Mori, H, Echizen, Y, Ishitani, R, Fukai, S, Tanaka, T, Perederina, A, Vassylyev, D.G, Kohno, T, Ito, K, Nureki, O. | Deposit date: | 2010-11-16 | Release date: | 2011-05-18 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (3.3 Å) | Cite: | Structure and function of a membrane component SecDF that enhances protein export Nature, 474, 2011
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3A4L
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![BU of 3a4l by Molmil](/molmil-images/mine/3a4l) | Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) kinase | Descriptor: | 1,2-ETHANEDIOL, IODIDE ION, L-seryl-tRNA(Sec) kinase, ... | Authors: | Araiso, Y, Ishitani, R, Soll, D, Nureki, O. | Deposit date: | 2009-07-10 | Release date: | 2009-10-20 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structure of a tRNA-dependent kinase essential for selenocysteine decoding Proc.Natl.Acad.Sci.USA, 106, 2009
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3AQO
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![BU of 3aqo by Molmil](/molmil-images/mine/3aqo) | |
2YVX
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![BU of 2yvx by Molmil](/molmil-images/mine/2yvx) | Crystal structure of magnesium transporter MgtE | Descriptor: | MAGNESIUM ION, Mg2+ transporter MgtE | Authors: | Hattori, M, Tanaka, Y, Fukai, S, Ishitani, R, Nureki, O. | Deposit date: | 2007-04-18 | Release date: | 2007-09-04 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (3.5 Å) | Cite: | Crystal structure of the MgtE Mg(2+) transporter Nature, 448, 2007
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2ZW9
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![BU of 2zw9 by Molmil](/molmil-images/mine/2zw9) | Crystal structure of tRNA wybutosine synthesizing enzyme TYW4 | Descriptor: | Leucine carboxyl methyltransferase 2, S-ADENOSYLMETHIONINE | Authors: | Suzuki, Y, Noma, A, Suzuki, T, Ishitani, R, Nureki, O. | Deposit date: | 2008-12-01 | Release date: | 2009-06-02 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4. Nucleic Acids Res., 37, 2009
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2ZWA
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![BU of 2zwa by Molmil](/molmil-images/mine/2zwa) | Crystal structure of tRNA wybutosine synthesizing enzyme TYW4 | Descriptor: | 1,2-ETHANEDIOL, CITRIC ACID, Leucine carboxyl methyltransferase 2, ... | Authors: | Suzuki, Y, Noma, A, Suzuki, T, Ishitani, R, Nureki, O. | Deposit date: | 2008-12-01 | Release date: | 2009-06-02 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4. Nucleic Acids Res., 37, 2009
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2ZJS
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![BU of 2zjs by Molmil](/molmil-images/mine/2zjs) | Crystal Structure of SecYE translocon from Thermus thermophilus with a Fab fragment | Descriptor: | Fab56 (heavy chain), Fab56 (light chain), Preprotein translocase SecE subunit, ... | Authors: | Tsukazaki, T, Mori, H, Fukai, S, Ishitani, R, Perederina, A, Vassylyev, D.G, Ito, K, Nureki, O. | Deposit date: | 2008-03-08 | Release date: | 2008-10-14 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | Conformational transition of Sec machinery inferred from bacterial SecYE structures Nature, 455, 2008
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2Z2U
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![BU of 2z2u by Molmil](/molmil-images/mine/2z2u) | Crystal structure of archaeal TYW1 | Descriptor: | UPF0026 protein MJ0257 | Authors: | Suzuki, Y, Ishitani, R, Nureki, O. | Deposit date: | 2007-05-28 | Release date: | 2007-10-23 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Crystal Structure of the Radical SAM Enzyme Catalyzing Tricyclic Modified Base Formation in tRNA J.Mol.Biol., 372, 2007
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2ZNI
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![BU of 2zni by Molmil](/molmil-images/mine/2zni) | Crystal structure of Pyrrolysyl-tRNA synthetase-tRNA(Pyl) complex from Desulfitobacterium hafniense | Descriptor: | CALCIUM ION, Pyrrolysyl-tRNA synthetase, bacterial tRNA | Authors: | Nozawa, K, Araiso, Y, Soll, D, Ishitani, R, Nureki, O. | Deposit date: | 2008-04-25 | Release date: | 2008-12-30 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality Nature, 457, 2009
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2ZNJ
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![BU of 2znj by Molmil](/molmil-images/mine/2znj) | Crystal structure of Pyrrolysyl-tRNA synthetase from Desulfitobacterium hafniense | Descriptor: | Putative uncharacterized protein | Authors: | Nozawa, K, Araiso, Y, Soll, D, Ishitani, R, Nureki, O. | Deposit date: | 2008-04-25 | Release date: | 2008-12-30 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality Nature, 457, 2009
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3AGK
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![BU of 3agk by Molmil](/molmil-images/mine/3agk) | Crystal structure of archaeal translation termination factor, aRF1 | Descriptor: | Peptide chain release factor subunit 1 | Authors: | Kobayashi, K, Kikuno, I, Ishitani, R, Ito, K, Nureki, O. | Deposit date: | 2010-04-01 | Release date: | 2010-11-03 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Omnipotent role of archaeal elongation factor 1 alpha (EF1{alpha}) in translational elongation and termination, and quality control of protein synthesis Proc.Natl.Acad.Sci.USA, 107, 2010
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3A4N
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![BU of 3a4n by Molmil](/molmil-images/mine/3a4n) | Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) kinase | Descriptor: | 1,2-ETHANEDIOL, IODIDE ION, L-seryl-tRNA(Sec) kinase, ... | Authors: | Araiso, Y, Ishitani, R, Soll, D, Nureki, O. | Deposit date: | 2009-07-10 | Release date: | 2009-10-20 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structure of a tRNA-dependent kinase essential for selenocysteine decoding Proc.Natl.Acad.Sci.USA, 106, 2009
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3AL6
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![BU of 3al6 by Molmil](/molmil-images/mine/3al6) | Crystal structure of Human TYW5 | Descriptor: | 2-OXOGLUTARIC ACID, JmjC domain-containing protein C2orf60, NICKEL (II) ION | Authors: | Kato, M, Araiso, Y, Ishitani, R, Nureki, O. | Deposit date: | 2010-07-26 | Release date: | 2010-12-01 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure of a novel JmjC-domain-containing protein, TYW5, involved in tRNA modification. Nucleic Acids Res., 39, 2011
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3A1U
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![BU of 3a1u by Molmil](/molmil-images/mine/3a1u) | Crystal structue of the cytosolic domain of T. maritima FeoB iron iransporter in GMPPNP form | Descriptor: | (4R)-2-METHYLPENTANE-2,4-DIOL, Iron(II) transport protein B, MAGNESIUM ION, ... | Authors: | Hattori, M, Ishitani, R, Nureki, O. | Deposit date: | 2009-04-22 | Release date: | 2009-09-22 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic FeoB iron transporter Structure, 17, 2009
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3A27
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![BU of 3a27 by Molmil](/molmil-images/mine/3a27) | Crystal structure of M. jannaschii TYW2 in complex with AdoMet | Descriptor: | S-ADENOSYLMETHIONINE, Uncharacterized protein MJ1557 | Authors: | Umitsu, M, Nishimasu, H, Ishitani, R, Nureki, O. | Deposit date: | 2009-04-28 | Release date: | 2009-09-15 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.005 Å) | Cite: | Structural basis of AdoMet-dependent aminocarboxypropyl transfer reaction catalyzed by tRNA-wybutosine synthesizing enzyme, TYW2 Proc.Natl.Acad.Sci.USA, 106, 2009
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3A2K
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![BU of 3a2k by Molmil](/molmil-images/mine/3a2k) | Crystal structure of TilS complexed with tRNA | Descriptor: | bacterial tRNA, tRNA(Ile)-lysidine synthase | Authors: | Nakanishi, K, Bonnefond, L, Ishitani, R, Nureki, O. | Deposit date: | 2009-05-23 | Release date: | 2009-10-20 | Last modified: | 2018-01-24 | Method: | X-RAY DIFFRACTION (3.65 Å) | Cite: | Structural basis for translational fidelity ensured by transfer RNA lysidine synthetase. Nature, 461, 2009
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3A1S
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![BU of 3a1s by Molmil](/molmil-images/mine/3a1s) | Crystal structue of the cytosolic domain of T. maritima FeoB iron iransporter in GDP form I | Descriptor: | (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, GUANOSINE-5'-DIPHOSPHATE, ... | Authors: | Hattori, M, Ishitani, R, Nureki, O. | Deposit date: | 2009-04-22 | Release date: | 2009-09-22 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic FeoB iron transporter Structure, 17, 2009
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3A1T
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![BU of 3a1t by Molmil](/molmil-images/mine/3a1t) | |
2ZY9
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![BU of 2zy9 by Molmil](/molmil-images/mine/2zy9) | |
3A1V
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![BU of 3a1v by Molmil](/molmil-images/mine/3a1v) | Crystal structue of the cytosolic domain of T. maritima FeoB iron iransporter in apo form | Descriptor: | (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... | Authors: | Hattori, M, Ishitani, R, Nureki, O. | Deposit date: | 2009-04-22 | Release date: | 2009-09-22 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic FeoB iron transporter Structure, 17, 2009
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3AII
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![BU of 3aii by Molmil](/molmil-images/mine/3aii) | |