Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 199 件
3X3B
DownloadVisualize
BU of 3x3b by Molmil
Crystal structure of the light-driven sodium pump KR2 in acidic state
分子名称: DI(HYDROXYETHYL)ETHER, OLEIC ACID, RETINAL, ...
著者Kato, H.E, Inoue, K, Abe-Yoshizumi, R, Kato, Y, Ono, H, Konno, M, Ishizuka, T, Hoque, M.R, Hososhima, S, Kunitomo, H, Ito, J, Yoshizawa, S, Yamashita, K, Takemoto, M, Nishizawa, T, Taniguchi, R, Kogure, K, Maturana, A.D, Iino, Y, Yawo, H, Ishitani, R, Kandori, H, Nureki, O.
登録日2015-01-18
公開日2015-04-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump
Nature, 521, 2015
3X3C
DownloadVisualize
BU of 3x3c by Molmil
Crystal structure of the light-driven sodium pump KR2 in neutral state
分子名称: OLEIC ACID, RETINAL, Sodium pumping rhodopsin
著者Kato, H.E, Inoue, K, Abe-Yoshizumi, R, Kato, Y, Ono, H, Konno, M, Ishizuka, T, Hoque, M.R, Hososhima, S, Kunitomo, H, Ito, J, Yoshizawa, S, Yamashita, K, Takemoto, M, Nishizawa, T, Taniguchi, R, Kogure, K, Maturana, A.D, Iino, Y, Yawo, H, Ishitani, R, Kandori, H, Nureki, O.
登録日2015-01-18
公開日2015-04-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump
Nature, 521, 2015
6JKC
DownloadVisualize
BU of 6jkc by Molmil
Crystal structure of tetrameric PepTSo2 in P4212 space group
分子名称: Proton:oligopeptide symporter POT family
著者Nagamura, R, Fukuda, M, Ishitani, R, Nureki, O.
登録日2019-02-28
公開日2019-05-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structural basis for oligomerization of the prokaryotic peptide transporter PepTSo2.
Acta Crystallogr.,Sect.F, 75, 2019
6IU4
DownloadVisualize
BU of 6iu4 by Molmil
Crystal structure of iron transporter VIT1 with cobalt ion
分子名称: COBALT (II) ION, VIT1, ZINC ION
著者Kato, T, Nishizawa, T, Yamashita, K, Taniguchi, R, Kumazaki, K, Ishitani, R, Nureki, O.
登録日2018-11-27
公開日2019-02-06
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Crystal structure of plant vacuolar iron transporter VIT1.
Nat Plants, 5, 2019
2ZJS
DownloadVisualize
BU of 2zjs by Molmil
Crystal Structure of SecYE translocon from Thermus thermophilus with a Fab fragment
分子名称: Fab56 (heavy chain), Fab56 (light chain), Preprotein translocase SecE subunit, ...
著者Tsukazaki, T, Mori, H, Fukai, S, Ishitani, R, Perederina, A, Vassylyev, D.G, Ito, K, Nureki, O.
登録日2008-03-08
公開日2008-10-14
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Conformational transition of Sec machinery inferred from bacterial SecYE structures
Nature, 455, 2008
3VWA
DownloadVisualize
BU of 3vwa by Molmil
Crystal structure of Cex1p
分子名称: Cytoplasmic export protein 1
著者Nozawa, K, Ishitani, R, Nureki, O.
登録日2012-08-13
公開日2013-06-05
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of Cex1p reveals the mechanism of tRNA trafficking between nucleus and cytoplasm
Nucleic Acids Res., 41, 2013
6JKD
DownloadVisualize
BU of 6jkd by Molmil
Crystal structure of tetrameric PepTSo2 in I4 space group
分子名称: Proton:oligopeptide symporter POT family
著者Nagamura, R, Fukuda, M, Ishitani, R, Nureki, O.
登録日2019-02-28
公開日2019-05-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.9 Å)
主引用文献Structural basis for oligomerization of the prokaryotic peptide transporter PepTSo2.
Acta Crystallogr.,Sect.F, 75, 2019
3AQO
DownloadVisualize
BU of 3aqo by Molmil
Structure and function of a membrane component SecDF that enhances protein export
分子名称: Probable SecDF protein-export membrane protein
著者Echizen, Y, Tsukazaki, T, Ishitani, R, Nureki, O.
登録日2010-11-16
公開日2011-05-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure and function of a membrane component SecDF that enhances protein export.
Nature, 474, 2011
6IDP
DownloadVisualize
BU of 6idp by Molmil
Crystal structure of Vibrio cholerae MATE transporter VcmN in the straight form
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, MATE family efflux transporter
著者Kusakizako, T, Claxton, D.P, Tanaka, Y, Maturana, A.D, Kuroda, T, Ishitani, R, Mchaourab, H.S, Nureki, O.
登録日2018-09-11
公開日2019-01-16
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.205 Å)
主引用文献Structural Basis of H+-Dependent Conformational Change in a Bacterial MATE Transporter.
Structure, 27, 2019
6JMQ
DownloadVisualize
BU of 6jmq by Molmil
LAT1-CD98hc complex bound to MEM-108 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4F2 cell-surface antigen heavy chain, ...
著者Lee, Y, Nishizawa, T, Kusakizako, T, Oda, K, Ishitani, R, Nakane, T, Nureki, O.
登録日2019-03-13
公開日2019-06-19
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (3.31 Å)
主引用文献Cryo-EM structure of the human L-type amino acid transporter 1 in complex with glycoprotein CD98hc.
Nat.Struct.Mol.Biol., 26, 2019
6JMR
DownloadVisualize
BU of 6jmr by Molmil
CD98hc extracellular domain bound to HBJ127 Fab and MEM-108 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4F2 cell-surface antigen heavy chain, ...
著者Lee, Y, Nishizawa, T, Kusakizako, T, Oda, K, Ishitani, R, Yokoyama, T, Nakane, T, Shirouzu, M, Nureki, O.
登録日2019-03-13
公開日2019-06-19
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Cryo-EM structure of the human L-type amino acid transporter 1 in complex with glycoprotein CD98hc.
Nat.Struct.Mol.Biol., 26, 2019
6IDR
DownloadVisualize
BU of 6idr by Molmil
Crystal structure of Vibrio cholerae MATE transporter VcmN in the bent form
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, MATE family efflux transporter
著者Kusakizako, T, Claxton, D.P, Tanaka, Y, Maturana, A.D, Kuroda, T, Ishitani, R, Mchaourab, H.S, Nureki, O.
登録日2018-09-11
公開日2019-01-16
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.502 Å)
主引用文献Structural Basis of H+-Dependent Conformational Change in a Bacterial MATE Transporter.
Structure, 27, 2019
3WUH
DownloadVisualize
BU of 3wuh by Molmil
Qri7 and AMP complex
分子名称: ADENOSINE MONOPHOSPHATE, ZINC ION, tRNA N6-adenosine threonylcarbamoyltransferase, ...
著者Tominaga, T, Kobayashi, K, Ishii, R, Ishitani, R, Nureki, O.
登録日2014-04-24
公開日2014-09-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.937 Å)
主引用文献Structure of Saccharomyces cerevisiae mitochondrial Qri7 in complex with AMP
ACTA CRYSTALLOGR.,SECT.F, 70, 2014
6IDS
DownloadVisualize
BU of 6ids by Molmil
Crystal structure of Vibrio cholerae MATE transporter VcmN D35N mutant
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, MATE family efflux transporter
著者Kusakizako, T, Claxton, D.P, Tanaka, Y, Maturana, A.D, Kuroda, T, Ishitani, R, Mchaourab, H.S, Nureki, O.
登録日2018-09-11
公開日2019-01-16
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Structural Basis of H+-Dependent Conformational Change in a Bacterial MATE Transporter.
Structure, 27, 2019
3WTR
DownloadVisualize
BU of 3wtr by Molmil
Crystal structure of E. coli YfcM bound to Co(II)
分子名称: COBALT (II) ION, Uncharacterized protein
著者Kobayashi, K, Ishii, R, Ishitani, R, Nureki, O.
登録日2014-04-19
公開日2015-04-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation
Nucleic Acids Res., 42, 2014
6KR6
DownloadVisualize
BU of 6kr6 by Molmil
Crystal structure of Drosophila Piwi
分子名称: MERCURY (II) ION, Protein piwi, ZINC ION, ...
著者Yamaguchi, S, Oe, A, Yamashita, K, Hirano, S, Mastumoto, N, Ishitani, R, Nishimasu, H, Nureki, O.
登録日2019-08-21
公開日2020-02-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal structure of Drosophila Piwi.
Nat Commun, 11, 2020
3VUW
DownloadVisualize
BU of 3vuw by Molmil
Crystal structure of A20 ZF7 in complex with linear ubiquitin, form I
分子名称: POTASSIUM ION, Polyubiquitin-C, Tumor necrosis factor alpha-induced protein 3, ...
著者Nishimasu, H, Ishitani, R, Nureki, O.
登録日2012-07-09
公開日2013-02-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Specific recognition of linear polyubiquitin by A20 zinc finger 7 is involved in NF-kappaB regulation
Embo J., 31, 2012
3VVR
DownloadVisualize
BU of 3vvr by Molmil
Crystal structure of MATE in complex with MaD5
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Putative uncharacterized protein, macrocyclic peptide
著者Tanaka, Y, Ishitani, R, Nureki, O.
登録日2012-07-27
公開日2013-04-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural basis for the drug extrusion mechanism by a MATE multidrug transporter.
Nature, 496, 2013
3VVS
DownloadVisualize
BU of 3vvs by Molmil
Crystal structure of MATE in complex with MaD3S
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Putative uncharacterized protein, macrocyclic peptide
著者Tanaka, Y, Ishitani, R, Nureki, O.
登録日2012-07-27
公開日2013-04-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for the drug extrusion mechanism by a MATE multidrug transporter.
Nature, 496, 2013
3VVO
DownloadVisualize
BU of 3vvo by Molmil
Crystal structure of MATE in the bent conformation
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Putative uncharacterized protein
著者Tanaka, Y, Ishitani, R, Nureki, O.
登録日2012-07-27
公開日2013-04-03
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.504 Å)
主引用文献Structural basis for the drug extrusion mechanism by a MATE multidrug transporter.
Nature, 496, 2013
3VUX
DownloadVisualize
BU of 3vux by Molmil
Crystal structure of A20 ZF7 in complex with linear ubiquitin, form II
分子名称: 1,2-ETHANEDIOL, POTASSIUM ION, Polyubiquitin-C, ...
著者Nishimasu, H, Ishitani, R, Nureki, O.
登録日2012-07-09
公開日2013-02-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.699 Å)
主引用文献Specific recognition of linear polyubiquitin by A20 zinc finger 7 is involved in NF-kappaB regulation
Embo J., 31, 2012
3VVN
DownloadVisualize
BU of 3vvn by Molmil
Crystal structure of MATE in the straight conformation
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Putative uncharacterized protein
著者Tanaka, Y, Ishitani, R, Nureki, O.
登録日2012-07-27
公開日2013-04-03
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.398 Å)
主引用文献Structural basis for the drug extrusion mechanism by a MATE multidrug transporter.
Nature, 496, 2013
3WO6
DownloadVisualize
BU of 3wo6 by Molmil
Crystal structure of YidC from Bacillus halodurans (form I)
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CADMIUM ION, Membrane protein insertase YidC 2
著者Kumazaki, K, Tsukazaki, T, Ishitani, R, Nureki, O.
登録日2013-12-20
公開日2014-04-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.403 Å)
主引用文献Structural basis of Sec-independent membrane protein insertion by YidC.
Nature, 509, 2014
3W4T
DownloadVisualize
BU of 3w4t by Molmil
Crystal structure of MATE P26A mutant
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Putative uncharacterized protein
著者Tanaka, Y, Ishitani, R, Nureki, O.
登録日2013-01-16
公開日2013-04-03
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.096 Å)
主引用文献Structural basis for the drug extrusion mechanism by a MATE multidrug transporter.
Nature, 496, 2013
3WAY
DownloadVisualize
BU of 3way by Molmil
Crystal Structure of Autotaxin in Complex with 4BoA
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Nishimasu, H, Ishitani, R, Nureki, O.
登録日2013-05-09
公開日2013-07-31
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.746 Å)
主引用文献Screening and X-ray Crystal Structure-based Optimization of Autotaxin (ENPP2) Inhibitors, Using a Newly Developed Fluorescence Probe
Acs Chem.Biol., 8, 2013

221051

件を2024-06-12に公開中

PDB statisticsPDBj update infoContact PDBjnumon