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PDB: 129 results

3VP7
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Crystal structure of the beta-alpha repeated, autophagy-specific (BARA) domain of Vps30/Atg6
Descriptor: Vacuolar protein sorting-associated protein 30
Authors:Noda, N.N, Kobayashi, T, Adachi, W, Fujioka, Y, Ohsumi, Y, Inagaki, F.
Deposit date:2012-02-28
Release date:2012-03-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the novel C-terminal domain of vacuolar protein sorting 30/autophagy-related protein 6 and its specific role in autophagy.
J.Biol.Chem., 287, 2012
1WLZ
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Crystal structure of DJBP fragment which was obtained by limited proteolysis
Descriptor: CAP-binding protein complex interacting protein 1 isoform a
Authors:Honbou, K, Suzuki, N, Horiuchi, M, Taira, T, Niki, T, Ariga, H, Inagaki, F.
Deposit date:2004-07-01
Release date:2005-08-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of DJBP Fragment which was obtained by Limited Proteolysis
To be Published
3VGO
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Crystal structure of the N-terminal fragment of Cbl-b
Descriptor: E3 ubiquitin-protein ligase CBL-B
Authors:Kobashigawa, Y, Noda, N.N, Inagaki, F.
Deposit date:2011-08-18
Release date:2011-12-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Autoinhibition and phosphorylation-induced activation mechanisms of human cancer and autoimmune disease-related E3 protein Cbl-b
Proc.Natl.Acad.Sci.USA, 108, 2011
3VH2
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Crystal structure of Saccharomyces cerevisiae Atg7 (1-613)
Descriptor: Ubiquitin-like modifier-activating enzyme ATG7, ZINC ION
Authors:Noda, N.N, Satoo, K, Inagaki, F.
Deposit date:2011-08-23
Release date:2011-09-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3VX7
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Crystal structure of Kluyveromyces marxianus Atg7NTD-Atg10 complex
Descriptor: E1, E2
Authors:Yamaguchi, M, Matoba, K, Sawada, R, Fujioka, Y, Nakatogawa, H, Yamamoto, H, Kobashigawa, Y, Hoshida, H, Akada, R, Ohsumi, Y, Noda, N.N, Inagaki, F.
Deposit date:2012-09-11
Release date:2012-11-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Noncanonical recognition and UBL loading of distinct E2s by autophagy-essential Atg7.
Nat.Struct.Mol.Biol., 19, 2012
3VXW
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Crystal structure of Saccharomyces cerevisiae Atg8 complexed with Atg32 AIM
Descriptor: Autophagy-related protein 8, Peptide from Autophagy-related protein 32, SULFATE ION
Authors:Noda, N.N, Inagaki, F.
Deposit date:2012-09-21
Release date:2012-10-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Autophagy-related protein 32 acts as autophagic degron and directly initiates mitophagy
J.Biol.Chem., 287, 2012
3VH1
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Crystal structure of Saccharomyces cerevisiae Atg7 (1-595)
Descriptor: Ubiquitin-like modifier-activating enzyme ATG7, ZINC ION
Authors:Noda, N.N, Satoo, K, Inagaki, F.
Deposit date:2011-08-23
Release date:2011-09-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of Atg8 activation by a homodimeric E1, Atg7.
Mol.Cell, 44, 2011
3VX6
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Crystal structure of Kluyveromyces marxianus Atg7NTD
Descriptor: E1
Authors:Yamaguchi, M, Matoba, K, Sawada, R, Fujioka, Y, Nakatogawa, H, Yamamoto, H, Kobashigawa, Y, Hoshida, H, Akada, R, Ohsumi, Y, Noda, N.N, Inagaki, F.
Deposit date:2012-09-11
Release date:2012-11-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Noncanonical recognition and UBL loading of distinct E2s by autophagy-essential Atg7.
Nat.Struct.Mol.Biol., 19, 2012
2CJO
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STRUCTURE OF FERREDOXIN, NMR, 10 STRUCTURES
Descriptor: FERREDOXIN
Authors:Hatanaka, H, Tanimura, R, Katoh, S, Inagaki, F.
Deposit date:1997-02-06
Release date:1997-05-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of ferredoxin from the thermophilic cyanobacterium Synechococcus elongatus and its thermostability.
J.Mol.Biol., 268, 1997
2CJN
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STRUCTURE OF FERREDOXIN, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: FERREDOXIN
Authors:Hatanaka, H, Tanimura, R, Katoh, S, Inagaki, F.
Deposit date:1997-02-06
Release date:1997-05-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of ferredoxin from the thermophilic cyanobacterium Synechococcus elongatus and its thermostability.
J.Mol.Biol., 268, 1997
1UEC
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Crystal structure of autoinhibited form of tandem SH3 domain of p47phox
Descriptor: Neutrophil cytosol factor 1
Authors:Yuzawa, S, Suzuki, N.N, Fujioka, Y, Ogura, K, Sumimoto, H, Inagaki, F.
Deposit date:2003-05-11
Release date:2003-05-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:A molecular mechanism for autoinhibition of the tandem SH3 domains of p47phox, the regulatory subunit of the phagocyte NADPH oxidase
Genes Cells, 9, 2004
1TZ1
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Solution structure of the PB1 domain of CDC24P (short form)
Descriptor: Cell division control protein 24
Authors:Yoshinaga, S, Terasawa, H, Ogura, K, Noda, Y, Ito, T, Sumimoto, H, Inagaki, F.
Deposit date:2004-07-09
Release date:2005-09-06
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the PB1 domain of CDC24P (short form)
To be Published
1UCF
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The Crystal Structure of DJ-1, a Protein Related to Male Fertility and Parkinson's Disease
Descriptor: RNA-binding protein regulatory subunit
Authors:Honbou, K, Suzuki, N.N, Horiuchi, M, Niki, T, Taira, T, Ariga, H, Inagaki, F.
Deposit date:2003-04-11
Release date:2003-08-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The Crystal Structure of DJ-1, a Protein Related to Male Fertility and Parkinson's Disease
J.BIOL.CHEM., 278, 2003
1VD2
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Solution Structure of the PB1 domain of PKCiota
Descriptor: Protein kinase C, iota type
Authors:Hirano, Y, Yoshinaga, S, Yokochi, M, Ogura, K, Noda, Y, Sumimoto, H, Inagaki, F.
Deposit date:2004-03-18
Release date:2004-09-14
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of atypical protein kinase C PB1 domain and its mode of interaction with ZIP/p62 and MEK5
J.Biol.Chem., 279, 2004
1WLP
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Solution Structure Of The P22Phox-P47Phox Complex
Descriptor: Cytochrome b-245 light chain, Neutrophil cytosol factor 1
Authors:Ogura, K, Torikai, S, Saikawa, K, Yuzawa, S, Sumimoto, H, Inagaki, F.
Deposit date:2004-06-29
Release date:2005-10-04
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR solution structure of the tandem Src homology 3 domains of p47phox complexed with a p22phox-derived proline-rich peptide
J.Biol.Chem., 281, 2006
1WMJ
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Solution structure of Thioredoxin type h from Oryza sativa
Descriptor: Thioredoxin H-type
Authors:Kumeta, H, Ogura, H, Akagi, K, Katoh, E, Inagaki, F.
Deposit date:2004-07-09
Release date:2005-10-25
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of Thioredoxin type h from Oryza sativa
To be Published
1WMH
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Crystal structure of a PB1 domain complex of Protein kinase c iota and Par6 alpha
Descriptor: Partitioning defective-6 homolog alpha, Protein kinase C, iota type
Authors:Hirano, Y, Yoshinaga, S, Suzuki, N.N, Horiuchi, M, Kohjima, M, Takeya, R, Sumimoto, H, Inagaki, F.
Deposit date:2004-07-09
Release date:2004-12-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of a Cell Polarity Regulator, a Complex between Atypical PKC and Par6 PB1 Domains
J.Biol.Chem., 280, 2005
1WZ3
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BU of 1wz3 by Molmil
The crystal structure of plant ATG12
Descriptor: autophagy 12b
Authors:Suzuki, N.N, Yoshimoto, K, Fujioka, Y, Ohsumi, Y, Inagaki, F.
Deposit date:2005-02-22
Release date:2005-06-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The crystal structure of plant ATG12 and its biological implication in autophagy.
Autophagy, 1, 2005
1X0N
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BU of 1x0n by Molmil
NMR structure of growth factor receptor binding protein SH2 domain complexed with the inhibitor
Descriptor: 4-[(10S,14S,18S)-18-(2-AMINO-2-OXOETHYL)-14-(1-NAPHTHYLMETHYL)-8,17,20-TRIOXO-7,16,19-TRIAZASPIRO[5.14]ICOS-11-EN-10-YL]BENZYLPHOSPHONIC ACID, Growth factor receptor-bound protein 2
Authors:Ogura, K, Shiga, T, Yuzawa, S, Yokochi, M, Burke, T.R, Inagaki, F.
Deposit date:2005-03-24
Release date:2005-04-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR structure of growth factor receptor binding protein SH2 domain complexed with the inhibitor
To be Published
1Z9Q
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BU of 1z9q by Molmil
Solution structure of SH3 domain of p40phox
Descriptor: Neutrophil cytosol factor 4
Authors:Adachi, S, Ogura, K, Fujioka, Y, Inagaki, F.
Deposit date:2005-04-04
Release date:2006-03-21
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of SH3 domain of p40phox
to be published
2CZO
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BU of 2czo by Molmil
Solution Structure of the PX Domain of Bem1p
Descriptor: Bud emergence protein 1
Authors:Maeda, A, Ogura, K, Horiuchi, M, Kumeta, H, Fujioka, Y, Inagaki, F.
Deposit date:2005-07-14
Release date:2006-10-03
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the PX domain of Bem1p
To be Published
2CY7
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BU of 2cy7 by Molmil
The crystal structure of human Atg4B
Descriptor: Cysteine protease APG4B
Authors:Sugawara, K, Suzuki, N.N, Fujioka, Y, Mizushima, N, Ohsumi, Y, Inagaki, F.
Deposit date:2005-07-05
Release date:2005-09-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for the Specificity and Catalysis of Human Atg4B Responsible for Mammalian Autophagy
J.Biol.Chem., 280, 2005
2D5R
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BU of 2d5r by Molmil
Crystal Structure of a Tob-hCaf1 Complex
Descriptor: CCR4-NOT transcription complex subunit 7, Tob1 protein
Authors:Horiuchi, M, Suzuki, N.N, Muroya, N, Takahasi, K, Nishida, M, Yoshida, Y, Ikematsu, N, Nakamura, T, Kawamura-Tsuzuku, J, Yamamoto, T, Inagaki, F.
Deposit date:2005-11-04
Release date:2006-12-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for the antiproliferative activity of the Tob-hCaf1 complex.
J.Biol.Chem., 284, 2009
2DVJ
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phosphorylated Crk-II
Descriptor: V-crk sarcoma virus CT10 oncogene homolog, isoform a
Authors:Kobashigawa, Y, Inagaki, F.
Deposit date:2006-07-31
Release date:2007-05-08
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK.
Nat.Struct.Mol.Biol., 14, 2007
2EYZ
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BU of 2eyz by Molmil
CT10-Regulated Kinase isoform II
Descriptor: v-crk sarcoma virus CT10 oncogene homolog isoform a
Authors:Kobashigawa, Y, Tanaka, S, Inagaki, F.
Deposit date:2005-11-10
Release date:2006-11-10
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK.
Nat.Struct.Mol.Biol., 14, 2007

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