Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 17801 results

7PNU
DownloadVisualize
BU of 7pnu by Molmil
Assembly intermediate of mouse mitochondrial ribosome small subunit without mS37 in complex with RbfA inward conformation
Descriptor: 12S mitochondrial rRNA, 28S ribosomal protein S10, mitochondrial, ...
Authors:Itoh, Y, Khawaja, A, Laptev, I, Sergiev, P, Rorbach, J, Amunts, A.
Deposit date:2021-09-08
Release date:2022-06-15
Last modified:2024-01-17
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Mechanism of mitoribosomal small subunit biogenesis and preinitiation.
Nature, 606, 2022
7PNV
DownloadVisualize
BU of 7pnv by Molmil
Assembly intermediate of mouse mitochondrial ribosome small subunit without mS37 in complex with RbfA and Mettl15
Descriptor: 12S mitochondrial rRNA, 12S rRNA N4-methylcytidine methyltransferase, 28S ribosomal protein S10, ...
Authors:Itoh, Y, Khawaja, A, Laptev, I, Sergiev, P, Rorbach, J, Amunts, A.
Deposit date:2021-09-08
Release date:2022-06-15
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Mechanism of mitoribosomal small subunit biogenesis and preinitiation.
Nature, 606, 2022
8CP6
DownloadVisualize
BU of 8cp6 by Molmil
Type six secretion system exported effector 5 (Tse5)
Descriptor: Toxin protein Tse5
Authors:Gonzalez-Magana, A, Tascon, I, Ubarretxena-Belandia, I, Albesa-Jove, D.
Deposit date:2023-03-01
Release date:2023-12-06
Method:ELECTRON MICROSCOPY (2.45 Å)
Cite:Structural and functional insights into the delivery of a bacterial Rhs pore-forming toxin to the membrane.
Nat Commun, 14, 2023
4UYM
DownloadVisualize
BU of 4uym by Molmil
Crystal structure of sterol 14-alpha demethylase (CYP51B) from a pathogenic filamentous fungus Aspergillus fumigatus in complex with voriconazole
Descriptor: 14-ALPHA STEROL DEMETHYLASE, PROTOPORPHYRIN IX CONTAINING FE, Voriconazole
Authors:Hargrove, T.Y, Wawrzak, Z, Lepesheva, G.I.
Deposit date:2014-09-02
Release date:2015-08-19
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure-Functional Characterization of Cytochrome P450 Sterol Alpha-Demethylase (Cyp51B) from Aspergillus Fumigatus and Molecular Basis for the Development of Antifungal Drugs
J.Biol.Chem., 290, 2015
6YFM
DownloadVisualize
BU of 6yfm by Molmil
Virus-like particle of bacteriophage ESE021
Descriptor: ZINC ION, coat protein
Authors:Rumnieks, J, Kalnins, G, Sisovs, M, Lieknina, I, Tars, K.
Deposit date:2020-03-26
Release date:2020-09-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.762 Å)
Cite:Three-dimensional structure of 22 uncultured ssRNA bacteriophages: Flexibility of the coat protein fold and variations in particle shapes.
Sci Adv, 6, 2020
8SDH
DownloadVisualize
BU of 8sdh by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody CC25.56
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Neutralizing antibody CC25.56 Heavy Chain, ...
Authors:Yuan, M, Wilson, I.A.
Deposit date:2023-04-06
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Broadly neutralizing antibodies targeting a conserved silent face of spike RBD resist extreme SARS-CoV-2 antigenic drift.
Biorxiv, 2023
7O0S
DownloadVisualize
BU of 7o0s by Molmil
Crystal structure of the N-terminal domain of CEP164(1-109) bound to camelid nanobody 36Z
Descriptor: Centrosomal protein of 164 kDa, Nanobody 36Z
Authors:e Silva, I.R, van Breugel, M.
Deposit date:2021-03-26
Release date:2021-09-15
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular mechanisms underlying the role of the centriolar CEP164-TTBK2 complex in ciliopathies.
Structure, 30, 2022
8VCX
DownloadVisualize
BU of 8vcx by Molmil
Human TCR A2.13 in complex with DQ8-InsCpep
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
Authors:Tran, T.M, Lim, J.J, Loh, T.J, Mannering, I.S, Rossjohn, J, Reid, H.H.
Deposit date:2023-12-14
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:A structural basis of T cell cross-reactivity to a native and spliced self-antigens presented by HLA-DQ8
To Be Published
4UY9
DownloadVisualize
BU of 4uy9 by Molmil
Structure of MLK1 kinase domain with leucine zipper 1
Descriptor: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 9
Authors:Read, J.A, Brassington, C, Pollard, H.K, Phillips, C, Green, I, Overmann, R, Collier, M.
Deposit date:2014-08-29
Release date:2015-09-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Recurrent Mlk4 Loss-of-Function Mutations Suppress Jnk Signaling to Promote Colon Tumorigenesis.
Cancer Res., 76, 2016
4WED
DownloadVisualize
BU of 4wed by Molmil
Crystal structure of ABC transporter substrate-binding protein from Sinorhizobium meliloti
Descriptor: ABC transporter, periplasmic solute-binding protein, FORMIC ACID, ...
Authors:Shabalin, I.G, Otwinowski, Z, Bacal, P, Cymborowski, M.T, Handing, K.B, Stead, M, Hammonds, J, Ahmed, M, Bonanno, J, Seidel, R, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2014-09-09
Release date:2014-09-24
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of ABC transporter substrate-binding protein from Sinorhizobium meliloti
to be published
6N50
DownloadVisualize
BU of 6n50 by Molmil
Metabotropic Glutamate Receptor 5 Extracellular Domain in Complex with Nb43 and L-quisqualic acid
Descriptor: (S)-2-AMINO-3-(3,5-DIOXO-[1,2,4]OXADIAZOLIDIN-2-YL)-PROPIONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, Metabotropic glutamate receptor 5, ...
Authors:Koehl, A, Hu, H, Feng, D, Sun, B, Chu, M, Weis, W.I, Skiniotis, G, Mathiesen, J.M, Kobilka, B.K.
Deposit date:2018-11-20
Release date:2019-01-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.751 Å)
Cite:Structural insights into the activation of metabotropic glutamate receptors.
Nature, 566, 2019
6N8R
DownloadVisualize
BU of 6n8r by Molmil
Crystal structure of the human cell polarity protein Lethal Giant Larvae 2 (Lgl2). aPKC phosphorylated, crystal form 2.
Descriptor: CHLORIDE ION, GLYCEROL, Lethal(2) giant larvae protein homolog 2
Authors:Almagor, L, Weis, W.I.
Deposit date:2018-11-30
Release date:2019-05-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structural insights into the aPKC regulatory switch mechanism of the human cell polarity protein lethal giant larvae 2.
Proc.Natl.Acad.Sci.USA, 116, 2019
7YPJ
DownloadVisualize
BU of 7ypj by Molmil
Spiral pentamer of the substrate-free Lon protease with a S678A mutation
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Lon protease
Authors:Li, S, Hsieh, K.Y, Kuo, C.I, Lee, S.H, Ho, M.R, Wang, C.H, Zhang, K, Chang, C.I.
Deposit date:2022-08-03
Release date:2023-10-25
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine.
Nat Commun, 14, 2023
1A2S
DownloadVisualize
BU of 1a2s by Molmil
THE SOLUTION NMR STRUCTURE OF OXIDIZED CYTOCHROME C6 FROM THE GREEN ALGA MONORAPHIDIUM BRAUNII, MINIMIZED AVERAGE STRUCTURE
Descriptor: CYTOCHROME C6, HEME C
Authors:Banci, L, Bertini, I, De La Rosa, M.A, Koulougliotis, D, Navarro, J.A, Walter, O.
Deposit date:1998-01-10
Release date:1998-04-29
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of oxidized cytochrome c6 from the green alga Monoraphidium braunii.
Biochemistry, 37, 1998
7YPK
DownloadVisualize
BU of 7ypk by Molmil
Close-ring hexamer of the substrate-bound Lon protease with an S678A mutation
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Lon protease, alpha-S1-casein
Authors:Li, S, Hsieh, K.Y, Kuo, C.I, Lee, S.H, Ho, M.R, Wang, C.H, Zhang, K, Chang, C.I.
Deposit date:2022-08-03
Release date:2023-10-25
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:A 5+1 assemble-to-activate mechanism of the Lon proteolytic machine.
Nat Commun, 14, 2023
136D
DownloadVisualize
BU of 136d by Molmil
SOLUTION STRUCTURE OF A PURINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING G(DOT)GC AND T(DOT)AT TRIPLES
Descriptor: DNA TRIPLEX
Authors:Radhakrishnan, I, Patel, D.J.
Deposit date:1993-08-30
Release date:1994-04-30
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a purine.purine.pyrimidine DNA triplex containing G.GC and T.AT triples.
Structure, 1, 1993
7PPX
DownloadVisualize
BU of 7ppx by Molmil
ATAD2 in complex with FragLite3
Descriptor: 1,2-ETHANEDIOL, 4-bromanyl-1,2-oxazole, ATPase family AAA domain-containing protein 2, ...
Authors:Turberville, S, Martin, M.P, Hope, I, Wood, D.J, Ng, Y.M, Heath, R, Endicott, J.A, Noble, M.E.M.
Deposit date:2021-09-15
Release date:2022-09-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions.
J.Med.Chem., 65, 2022
4WDQ
DownloadVisualize
BU of 4wdq by Molmil
Crystal structure of haloalkane dehalogenase LinB32 mutant (L177W) from Sphingobium japonicum UT26
Descriptor: CHLORIDE ION, Haloalkane dehalogenase, MAGNESIUM ION
Authors:Degtjarik, O, Rezacova, P, Chaloupkova, R, Damborsky, J, Kuta-Smatanova, I.
Deposit date:2014-09-09
Release date:2015-12-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal structure of haloalkane dehalogenase LinB mutant (L177W) from Sphingobium japonicum UT26
Acs Catalysis, 2016
4WCV
DownloadVisualize
BU of 4wcv by Molmil
Haloalkane dehalogenase DhaA mutant from Rhodococcus rhodochrous (T148L+G171Q+A172V+C176G)
Descriptor: ACETATE ION, CHLORIDE ION, Haloalkane dehalogenase, ...
Authors:Holubeva, T, Prudnikova, T, Kuta-Smatanova, I, Rezacova, P.
Deposit date:2014-09-05
Release date:2014-10-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Balancing the stability-activity trade-off by fine-tuning dehalogenase access tunnels
Chemcatchem, 2015
7O7K
DownloadVisualize
BU of 7o7k by Molmil
Crystal structure of the human DYRK1A kinase domain bound to abemaciclib
Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, DI(HYDROXYETHYL)ETHER, ...
Authors:Kaltheuner, I.H, Anand, K, Geyer, M.
Deposit date:2021-04-13
Release date:2021-11-24
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Abemaciclib is a potent inhibitor of DYRK1A and HIP kinases involved in transcriptional regulation.
Nat Commun, 12, 2021
4W5N
DownloadVisualize
BU of 4w5n by Molmil
The Crystal Structure of Human Argonaute2 Bound to a Defined Guide RNA
Descriptor: MAGNESIUM ION, PHENOL, Protein argonaute-2, ...
Authors:Schirle, N.T, Sheu-Gruttadauria, J, MacRae, I.J.
Deposit date:2014-08-18
Release date:2014-11-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Gene regulation. Structural basis for microRNA targeting.
Science, 346, 2014
4W6B
DownloadVisualize
BU of 4w6b by Molmil
Crystal Structure of a Superfolder GFP Mutant K26C Disulfide Dimer, P 21 21 21 Space Group
Descriptor: CHLORIDE ION, MAGNESIUM ION, fluorescent protein K26C
Authors:Pashkov, I, Sawaya, M.R, Leibly, D.J, Waldo, G.S, Yeates, T.O.
Deposit date:2014-08-20
Release date:2015-02-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A Suite of Engineered GFP Molecules for Oligomeric Scaffolding.
Structure, 23, 2015
6N7F
DownloadVisualize
BU of 6n7f by Molmil
1.90 Angstrom Resolution Crystal Structure of Glutathione Reductase from Streptococcus pyogenes in Complex with FAD.
Descriptor: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BICARBONATE ION, ...
Authors:Minasov, G, Shuvalova, L, Shabalin, I.G, Grabowski, M, Olphie, A, Cardona-Correa, A, Anderson, W.F, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-11-27
Release date:2018-12-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:1.90 Angstrom Resolution Crystal Structure of Glutathione Reductase from Streptococcus pyogenes in Complex with FAD.
To Be Published
6YBY
DownloadVisualize
BU of 6yby by Molmil
Crystal structure of the D116N mutant of the light-driven sodium pump KR2 in the monomeric form, pH 4.6
Descriptor: EICOSANE, RETINAL, SODIUM ION, ...
Authors:Kovalev, K, Gushchin, I, Gordeliy, V.
Deposit date:2020-03-18
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular mechanism of light-driven sodium pumping.
Nat Commun, 11, 2020
6N8Q
DownloadVisualize
BU of 6n8q by Molmil
Crystal structure of the human cell polarity protein Lethal Giant Larvae 2 (Lgl2). Unphosphorylated, crystal form 2.
Descriptor: CHLORIDE ION, GLYCEROL, Lethal(2) giant larvae protein homolog 2
Authors:Almagor, L, Weis, W.I.
Deposit date:2018-11-30
Release date:2019-05-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into the aPKC regulatory switch mechanism of the human cell polarity protein lethal giant larvae 2.
Proc.Natl.Acad.Sci.USA, 116, 2019

223532

数据于2024-08-07公开中

PDB statisticsPDBj update infoContact PDBjnumon