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PDB: 17822 results

4WYW
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BU of 4wyw by Molmil
Mutant K20E of 3D polymerase from Foot-and-Mouth Disease Virus
Descriptor: ACETATE ION, GLYCEROL, RNA-directed RNA polymerase 3D-POL, ...
Authors:Ferrer-Orta, C, Verdaguer, N, de la Higuera, I, Domingo, E.
Deposit date:2014-11-18
Release date:2015-05-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Multifunctionality of a picornavirus polymerase domain: nuclear localization signal and nucleotide recognition.
J.Virol., 89, 2015
6T3H
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BU of 6t3h by Molmil
Structure of the Rap conjugation gene regulator of the plasmid pLS20 in apo form
Descriptor: Response regulator aspartate phosphatase
Authors:Crespo, I, Bernardo, N, Meijer, W.J.J, Boer, D.R.
Deposit date:2019-10-11
Release date:2020-06-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.039 Å)
Cite:Inactivation of the dimeric RappLS20 anti-repressor of the conjugation operon is mediated by peptide-induced tetramerization.
Nucleic Acids Res., 48, 2020
4FJV
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BU of 4fjv by Molmil
Crystal Structure of Human Otubain2 and Ubiquitin Complex
Descriptor: ETHANAMINE, GLYCEROL, Polyubiquitin-C, ...
Authors:Altun, M, Walter, T.S, Kramer, H.B, Iphofer, A, David, Y, Komsany, A, Ternette, N, Nicholson, B, Navon, A, Stuart, D.I, Ren, J, Kessler, B.M.
Deposit date:2012-06-12
Release date:2013-06-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.047 Å)
Cite:The human otubain2-ubiquitin structure provides insights into the cleavage specificity of poly-ubiquitin-linkages.
Plos One, 10, 2015
4FHG
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BU of 4fhg by Molmil
Spore photoproduct lyase C140S mutant
Descriptor: 1,2-ETHANEDIOL, IRON/SULFUR CLUSTER, SULFATE ION, ...
Authors:Benjdia, A, Heil, K, Barends, T.R.M, Carell, T, Schlichting, I.
Deposit date:2012-06-06
Release date:2012-07-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into recognition and repair of UV-DNA damage by Spore Photoproduct Lyase, a radical SAM enzyme.
Nucleic Acids Res., 40, 2012
6IKY
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BU of 6iky by Molmil
K2U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
Descriptor: (3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic acid, NICKEL (II) ION, Peptide deformylase
Authors:Lee, I.H, Kang, L.W.
Deposit date:2018-10-16
Release date:2019-10-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:FBIs complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
To be published
5JXP
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BU of 5jxp by Molmil
Crystal structure of Porphyromonas endodontalis DPP11 in alternate conformation
Descriptor: Asp/Glu-specific dipeptidyl-peptidase, CALCIUM ION, CHLORIDE ION
Authors:Bezerra, G.A, Cornaciu, I, Hoffmann, G, Djinovic-Carugo, K, Marquez, J.A.
Deposit date:2016-05-13
Release date:2017-06-14
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Bacterial protease uses distinct thermodynamic signatures for substrate recognition.
Sci Rep, 7, 2017
4WYL
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BU of 4wyl by Molmil
Mutant K18E of 3D polymerase from Foot-and-Moth Disease Virus
Descriptor: ACETATE ION, GLYCEROL, MANGANESE (II) ION, ...
Authors:Ferrer-Orta, C, Verdaguer, N, de la Higuera, I, Domingo, E.
Deposit date:2014-11-17
Release date:2015-05-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Multifunctionality of a picornavirus polymerase domain: nuclear localization signal and nucleotide recognition.
J.Virol., 89, 2015
6T7S
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BU of 6t7s by Molmil
MexB structure solved by cryo-EM in nanodisc in absence of its protein partners
Descriptor: Efflux pump membrane transporter
Authors:Glavier, M, Schoehn, G, Taveau, J.C, Phan, G, Daury, L, Lambert, O, Broutin, I.
Deposit date:2019-10-23
Release date:2020-09-16
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Antibiotic export by MexB multidrug efflux transporter is allosterically controlled by a MexA-OprM chaperone-like complex.
Nat Commun, 11, 2020
4FQH
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BU of 4fqh by Molmil
Crystal Structure of Fab CR9114
Descriptor: 1,2-ETHANEDIOL, NITRATE ION, antibody CR9114 heavy chain, ...
Authors:Dreyfus, C, Wilson, I.A.
Deposit date:2012-06-25
Release date:2012-08-22
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Highly conserved protective epitopes on influenza B viruses.
Science, 337, 2012
6IQU
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BU of 6iqu by Molmil
Crystal structure of Prc with PDZ domain deletion in complex with NlpI
Descriptor: Lipoprotein NlpI, Tail-specific protease
Authors:Chueh, C.K, Chang, C.I.
Deposit date:2018-11-08
Release date:2019-07-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Basis for the Differential Regulatory Roles of the PDZ Domain in C-Terminal Processing Proteases.
Mbio, 10, 2019
5JZA
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BU of 5jza by Molmil
Aspartyl/Asparaginyl beta-hydroxylase (AspH)oxygenase and TPR domains in complex with manganese and N-oxalylglycine
Descriptor: Aspartyl/asparaginyl beta-hydroxylase, GLYCEROL, MANGANESE (II) ION, ...
Authors:McDonough, M.A, Pfeffer, I.
Deposit date:2016-05-16
Release date:2017-05-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Aspartate/asparagine-beta-hydroxylase crystal structures reveal an unexpected epidermal growth factor-like domain substrate disulfide pattern.
Nat Commun, 10, 2019
5JZU
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BU of 5jzu by Molmil
Aspartyl/Asparaginyl beta-hydroxylase (AspH)oxygenase and TPR domains in complex with manganese, N-oxalylglycine and factor X substrate peptide fragment (26mer)
Descriptor: Aspartyl/asparaginyl beta-hydroxylase, Coagulation factor X, MANGANESE (II) ION, ...
Authors:McDonough, M.A, Pfeffer, I.
Deposit date:2016-05-17
Release date:2017-06-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Aspartate/asparagine-beta-hydroxylase crystal structures reveal an unexpected epidermal growth factor-like domain substrate disulfide pattern.
Nat Commun, 10, 2019
4BVU
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BU of 4bvu by Molmil
Structure of Shigella effector OspG in complex with host UbcH5c- Ubiquitin conjugate
Descriptor: PROTEIN KINASE OSPG, UBIQUITIN, UBIQUITIN-CONJUGATING ENZYME E2 D3
Authors:Pruneda, J.N, LeTrong, I, Stenkamp, R.E, Klevit, R.E, Brzovic, P.S.
Deposit date:2013-06-28
Release date:2014-01-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:E2~Ub Conjugates Regulate the Kinase Activity of Shigella Effector Ospg During Pathogenesis.
Embo J., 33, 2014
4YL7
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BU of 4yl7 by Molmil
Crystal structure of the indole prenyltransferase MpnD from Marinactinospora thermotolerans
Descriptor: Aromatic prenyltransferase
Authors:Mori, T, Morita, H, Abe, I.
Deposit date:2015-03-05
Release date:2016-03-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:Manipulation of prenylation reactions by structure-based engineering of bacterial indolactam prenyltransferases.
Nat Commun, 7, 2016
4YNH
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BU of 4ynh by Molmil
Structure of the C. elegans SAS-5 Implico dimerization domain
Descriptor: Spindle assembly abnormal protein 5
Authors:Rogala, K.B, Vakonakis, I, Hatzopoulos, G.N.
Deposit date:2015-03-10
Release date:2015-06-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1 Å)
Cite:The Caenorhabditis elegans protein SAS-5 forms large oligomeric assemblies critical for centriole formation.
Elife, 4, 2015
5JS2
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BU of 5js2 by Molmil
Human Argonaute-2 Bound to a Modified siRNA
Descriptor: MAGNESIUM ION, PHENOL, PHOSPHATE ION, ...
Authors:Schirle, N.T, MacRae, I.J.
Deposit date:2016-05-07
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.954 Å)
Cite:Structural Analysis of Human Argonaute-2 Bound to a Modified siRNA Guide.
J.Am.Chem.Soc., 138, 2016
4GY4
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BU of 4gy4 by Molmil
Role of the biradical intermediate observed during the turnover of SLAC: A two-domain laccase from Streptomyces coelicolor
Descriptor: COPPER (II) ION, OXYGEN ATOM, Putative copper oxidase, ...
Authors:Nederlof, I, Gupta, A, Canters, G.W.
Deposit date:2012-09-05
Release date:2012-09-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Involvement of Tyr108 in the enzyme mechanism of the small laccase from Streptomyces coelicolor
J.Am.Chem.Soc., 134, 2012
6IL2
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BU of 6il2 by Molmil
K4U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
Descriptor: CADMIUM ION, L-[(N-HYDROXYAMINO)CARBONYL]PHENYLALANINE, Peptide deformylase
Authors:Lee, I.H, Kang, L.W.
Deposit date:2018-10-16
Release date:2019-10-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:FBIs complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
To be published
6SST
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BU of 6sst by Molmil
cryo-em structure of alpha-synuclein fibril polymorph 2B
Descriptor: Alpha-synuclein
Authors:Guerrero-Ferreira, R, Taylor, N.M.I, Arteni, A.A, Melki, R, Meier, B.H, Bockmann, A, Bousset, L, Stahlberg, H.
Deposit date:2019-09-09
Release date:2019-12-18
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Two new polymorphic structures of human full-length alpha-synuclein fibrils solved by cryo-electron microscopy.
Elife, 8, 2019
5JXK
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BU of 5jxk by Molmil
Crystal structure of Porphyromonas endodontalis DPP11
Descriptor: Asp/Glu-specific dipeptidyl-peptidase, CHLORIDE ION
Authors:Bezerra, G.A, Cornaciu, I, Hoffmann, G, Djinovic-Carugo, K, Marquez, J.A.
Deposit date:2016-05-13
Release date:2017-06-14
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Bacterial protease uses distinct thermodynamic signatures for substrate recognition.
Sci Rep, 7, 2017
6JBV
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BU of 6jbv by Molmil
Crystal structure of SpaE basal pilin from Lactobacillus rhamnosus GG - Selenium derivative
Descriptor: Pilus assembly protein, SODIUM ION
Authors:Megta, A.K, Mishra, A.K, Palva, A, von Ossowski, I, Krishnan, V.
Deposit date:2019-01-26
Release date:2019-06-26
Last modified:2021-09-15
Method:X-RAY DIFFRACTION (1.712 Å)
Cite:Crystal structure of basal pilin SpaE reveals the molecular basis of its incorporation in the lactobacillar SpaFED pilus.
J.Struct.Biol., 207, 2019
6SVU
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BU of 6svu by Molmil
Reference structure of bovine trypsin (even frames of crystal x30)
Descriptor: BENZAMIDINE, CALCIUM ION, Cationic trypsin, ...
Authors:Ahlberg Gagner, V, Lundholm, I, Garcia-Bonete, M.J, Rodilla, H, Friedman, R, Zhaunerchyk, V, Bourenkov, G, Schneider, T, Stake, J, Katona, G.
Deposit date:2019-09-19
Release date:2020-01-22
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Clustering of atomic displacement parameters in bovine trypsin reveals a distributed lattice of atoms with shared chemical properties.
Sci Rep, 9, 2019
6SVZ
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BU of 6svz by Molmil
Reference structure of bovine trypsin (even frames of crystal x34)
Descriptor: BENZAMIDINE, CALCIUM ION, Cationic trypsin, ...
Authors:Ahlberg Gagner, V, Lundholm, I, Garcia-Bonete, M.J, Rodilla, H, Friedman, R, Zhaunerchyk, V, Bourenkov, G, Schneider, T, Stake, J, Katona, G.
Deposit date:2019-09-19
Release date:2020-01-22
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Clustering of atomic displacement parameters in bovine trypsin reveals a distributed lattice of atoms with shared chemical properties.
Sci Rep, 9, 2019
4GSJ
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BU of 4gsj by Molmil
Crystal structure of Atg7 NTD K14A F16A D18A mutant
Descriptor: CITRIC ACID, ISOPROPYL ALCOHOL, Ubiquitin-like modifier-activating enzyme ATG7
Authors:Kaiser, S.E, Mao, K, Taherbhoy, A.M, Yu, S, Olszewski, J.L, Duda, D.M, Kurinov, I, Deng, A, Fenn, T.D, Klionsky, D.J, Schulman, B.A.
Deposit date:2012-08-27
Release date:2012-11-14
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.695 Å)
Cite:Noncanonical E2 recruitment by the autophagy E1 revealed by Atg7-Atg3 and Atg7-Atg10 structures.
Nat.Struct.Mol.Biol., 19, 2012
5UM8
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BU of 5um8 by Molmil
Crystal structure of HIV-1 envelope trimer 16055 NFL TD CC (T569G) in complex with Fabs 35022 and PGT124
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab 35022 heavy chain, ...
Authors:Garces, F, Stanfield, R.L, Wilson, I.A.
Deposit date:2017-01-26
Release date:2017-05-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.935 Å)
Cite:Glycine Substitution at Helix-to-Coil Transitions Facilitates the Structural Determination of a Stabilized Subtype C HIV Envelope Glycoprotein.
Immunity, 46, 2017

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数据于2024-08-14公开中

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