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PDB: 17801 results

7EV4
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BU of 7ev4 by Molmil
Crystal structure of the Lon-like protease MtaLonC with S582A mutation in complex with F-b20-Q
Descriptor: Endopeptidase La, F-b20-Q peptide {ortho-aminobenzoic acid (Abz)- QLRSLNGEWRFAWFPAPEAV[Tyr(3-NO2)]A}, PHOSPHATE ION
Authors:Hsieh, K.Y, Kuo, C.I, Su, S.C, Huang, K.F, Chang, C.I.
Deposit date:2021-05-20
Release date:2021-11-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Processive cleavage of substrate at individual proteolytic active sites of the Lon protease complex.
Sci Adv, 7, 2021
7Q12
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Human GYS1-GYG1 complex activated state bound to glucose-6-phosphate
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, Glycogen [starch] synthase, muscle, ...
Authors:McCorvie, T.J, Shrestha, L, Froese, D.S, Ferreira, I.M, Yue, W.W.
Deposit date:2021-10-17
Release date:2022-07-27
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Molecular basis for the regulation of human glycogen synthase by phosphorylation and glucose-6-phosphate.
Nat.Struct.Mol.Biol., 29, 2022
5CER
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BU of 5cer by Molmil
Bd0816 Predatory Endopeptidase from Bdellovibrio bacteriovorus in complex with immunity protein Bd3460
Descriptor: 1,2-ETHANEDIOL, Bd0816, Bd3460
Authors:Lovering, A.L, Cadby, I.T, Lambert, C, Sockett, R.E.
Deposit date:2015-07-07
Release date:2015-12-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Ankyrin-mediated self-protection during cell invasion by the bacterial predator Bdellovibrio bacteriovorus.
Nat Commun, 6, 2015
7Q0S
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BU of 7q0s by Molmil
Human GYS1-GYG1 complex inhibited-like state bound to glucose-6-phosphate
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, Glycogen [starch] synthase, muscle, ...
Authors:McCorvie, T.J, Shrestha, L, Froese, D.S, Ferreira, I.M, Yue, W.W.
Deposit date:2021-10-16
Release date:2022-07-27
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Molecular basis for the regulation of human glycogen synthase by phosphorylation and glucose-6-phosphate.
Nat.Struct.Mol.Biol., 29, 2022
7Q13
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BU of 7q13 by Molmil
Human GYS1-GYG1 complex activated state bound to glucose-6-phosphate, uridine diphosphate, and glucose
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, Glycogen [starch] synthase, muscle, ...
Authors:McCorvie, T.J, Shrestha, L, Froese, D.S, Ferreira, I.M, Yue, W.W.
Deposit date:2021-10-17
Release date:2022-07-27
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Molecular basis for the regulation of human glycogen synthase by phosphorylation and glucose-6-phosphate.
Nat.Struct.Mol.Biol., 29, 2022
6YJB
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BU of 6yjb by Molmil
VcaM4I restriction endonuclease 5hmC-ssDNA complex
Descriptor: CHLORIDE ION, DNA (5'-D(*CP*AP*(5HC)P*AP*G)-3'), GLYCEROL, ...
Authors:Pastor, M, Czapinska, H, Lutz, T, Helbrecht, I, Xu, S, Bochtler, M.
Deposit date:2020-04-02
Release date:2020-12-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structures of the EVE-HNH endonuclease VcaM4I in the presence and absence of DNA.
Nucleic Acids Res., 49, 2021
7EUY
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BU of 7euy by Molmil
Crystal structure of the Lon-like protease MtaLonC with D582A mutation in complex with substrate polypeptide
Descriptor: ALA-PRO-GLU-ALA-VAL, Endopeptidase La, PHOSPHATE ION
Authors:Hsieh, K.Y, Kuo, C.I, Su, S.C, Huang, K.F, Chang, C.I.
Deposit date:2021-05-19
Release date:2021-11-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Processive cleavage of substrate at individual proteolytic active sites of the Lon protease complex.
Sci Adv, 7, 2021
6JF6
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BU of 6jf6 by Molmil
Met-ala-ser bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
Descriptor: MET-ALA-SER, Peptide deformylase, ZINC ION
Authors:Jung, K.H, Ho, T.H, Lee, I.H, Kang, L.W.
Deposit date:2019-02-08
Release date:2020-02-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Met-ala-ser bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
To be published
5MNU
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BU of 5mnu by Molmil
OXA-10 Avibactam complex with bound bromide
Descriptor: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, BROMIDE ION, Beta-lactamase OXA-10, ...
Authors:Brem, J, McDonough, M, Clifton, I.
Deposit date:2016-12-13
Release date:2017-07-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:(13)C-Carbamylation as a mechanistic probe for the inhibition of class D beta-lactamases by avibactam and halide ions.
Org. Biomol. Chem., 15, 2017
6WCW
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BU of 6wcw by Molmil
Structure of human Rubicon RH domain in complex with GTP-bound Rab7
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Ras-related protein Rab-7a, ...
Authors:Bhargava, H.K, Byck, J.M, Farrell, D.P, Anishchenko, I, DiMaio, F, Im, Y.J, Hurley, J.H.
Deposit date:2020-03-31
Release date:2020-07-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for autophagy inhibition by the human Rubicon-Rab7 complex.
Proc.Natl.Acad.Sci.USA, 117, 2020
5MUU
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BU of 5muu by Molmil
dsRNA bacteriophage phi6 nucleocapsid
Descriptor: Major inner protein P1, Major outer capsid protein, Packaging enzyme P4
Authors:Sun, Z, El Omari, K, Sun, X, Ilca, S.L, Kotecha, A, Stuart, D.I, Poranen, M.M, Huiskonen, J.T.
Deposit date:2017-01-14
Release date:2017-03-22
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Double-stranded RNA virus outer shell assembly by bona fide domain-swapping.
Nat Commun, 8, 2017
5CN8
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BU of 5cn8 by Molmil
Ultrafast dynamics in myoglobin: 0.3 ps time delay
Descriptor: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Barends, T.R.M, Foucar, L, Ardevol, A, Nass, K.J, Aquila, A, Botha, S, Doak, R.B, Falahati, K, Hartmann, E, Hilpert, M, Heinz, M, Hoffmann, M.C, Koefinger, J, Koglin, J, Kovacsova, G, Liang, M, Milathianaki, D, Lemke, H.T, Reinstein, J, Roome, C.M, Shoeman, R.L, Williams, G.J, Burghardt, I, Hummer, G, Boutet, S, Schlichting, I.
Deposit date:2015-07-17
Release date:2015-09-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Direct observation of ultrafast collective motions in CO myoglobin upon ligand dissociation.
Science, 350, 2015
5CNF
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BU of 5cnf by Molmil
Ultrafast dynamics in myoglobin: 50 ps time delay
Descriptor: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Barends, T.R.M, Foucar, L, Ardevol, A, Nass, K.J, Aquila, A, Botha, S, Doak, R.B, Falahati, K, Hartmann, E, Hilpert, M, Heinz, M, Hoffmann, M.C, Koefinger, J, Koglin, J, Kovacsova, G, Liang, M, Milathianaki, D, Lemke, H.T, Reinstein, J, Roome, C.M, Shoeman, R.L, Williams, G.J, Burghardt, I, Hummer, G, Boutet, S, Schlichting, I.
Deposit date:2015-07-17
Release date:2015-09-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Direct observation of ultrafast collective motions in CO myoglobin upon ligand dissociation.
Science, 350, 2015
5CLV
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BU of 5clv by Molmil
Crystal Structure of KorA-operator DNA complex (KorA-OA)
Descriptor: 5'-D(CP*CP*AP*AP*GP*TP*TP*TP*AP*GP*CP*TP*AP*AP*AP*CP*TP*TP*GP*GP*)-3', TrfB transcriptional repressor protein
Authors:White, S.A, Hyde, E.I, Rajasekar, K.V.
Deposit date:2015-07-16
Release date:2016-04-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Flexibility of KorA, a plasmid-encoded, global transcription regulator, in the presence and the absence of its operator.
Nucleic Acids Res., 44, 2016
1J4Q
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BU of 1j4q by Molmil
NMR STRUCTURE OF THE FHA1 DOMAIN OF RAD53 IN COMPLEX WITH A RAD9-DERIVED PHOSPHOTHREONINE (AT T192) PEPTIDE
Descriptor: DNA REPAIR PROTEIN RAD9, PROTEIN KINASE SPK1
Authors:Yuan, C, Yongkiettrakul, S, Byeon, I.-J.L, Zhou, S, Tsai, M.-D.
Deposit date:2001-10-22
Release date:2001-12-05
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structures of two FHA1-phosphothreonine peptide complexes provide insight into the structural basis of the ligand specificity of FHA1 from yeast Rad53.
J.Mol.Biol., 314, 2001
5MSF
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BU of 5msf by Molmil
MS2 PROTEIN CAPSID/RNA COMPLEX
Descriptor: 5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*AP*CP*GP*GP*G)-3', MS2 PROTEIN CAPSID
Authors:Rowsell, S, Stonehouse, N.J, Convery, M.A, Adams, C.J, Ellington, A.D, Hirao, I, Peabody, D.S, Stockley, P.G, Phillips, S.E.V.
Deposit date:1998-05-15
Release date:1998-11-11
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of a series of RNA aptamers complexed to the same protein target.
Nat.Struct.Biol., 5, 1998
7PZO
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BU of 7pzo by Molmil
mite allergen Der p 3 from Dermatophagoides pteronyssinus
Descriptor: SULFATE ION, mite allergen Der p 3
Authors:Timofeev, V.I, Shevtsov, M.B, Abramchik, Y.A, Mikheeva, O.O, Kostromina, M.A, Lykoshin, D.D, Zayats, E.A, Zavriev, S.K, Esipov, R.S, Kuranova, I.P.
Deposit date:2021-10-13
Release date:2022-11-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural plasticity and thermal stability of the histone-like protein from Spiroplasma melliferum are due to phenylalanine insertions into the conservative scaffold.
J.Biomol.Struct.Dyn., 36, 2018
6YOB
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BU of 6yob by Molmil
Structure of Lysozyme from COC IMISX setup collected by rotation serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, ACETIC ACID, BROMIDE ION, ...
Authors:Huang, C.-Y, Martiel, I, Villanueva-Perez, P, Panepucci, E, Caffrey, M, Wang, M.
Deposit date:2020-04-14
Release date:2020-11-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Low-dose in situ prelocation of protein microcrystals by 2D X-ray phase-contrast imaging for serial crystallography.
Iucrj, 7, 2020
6YOG
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BU of 6yog by Molmil
Structure of PepTSt from COC IMISX setup collected by still serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging
Descriptor: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE, 2-(2-METHOXYETHOXY)ETHANOL, Di-or tripeptide:H+ symporter, ...
Authors:Huang, C.-Y, Martiel, I, Villanueva-Perez, P, Panepucci, E, Caffrey, M, Wang, M.
Deposit date:2020-04-14
Release date:2020-11-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Low-dose in situ prelocation of protein microcrystals by 2D X-ray phase-contrast imaging for serial crystallography.
Iucrj, 7, 2020
4XQ7
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BU of 4xq7 by Molmil
The crystal structure of the OAS-like domain (OLD) of human OASL
Descriptor: 2'-5'-oligoadenylate synthase-like protein
Authors:Ibsen, M.S, Gad, H.H, Andersen, L.L, Hornung, V, Julkunen, I, Sarkar, S.N, Hartmann, R.
Deposit date:2015-01-19
Release date:2015-04-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and functional analysis reveals that human OASL binds dsRNA to enhance RIG-I signaling.
Nucleic Acids Res., 43, 2015
7Q3Q
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BU of 7q3q by Molmil
Crystal structure of SARS-CoV-2 RBD in complex with the neutralizing nanobody VHH-12
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, GLYCEROL, ...
Authors:Fernandez, I, Pederzoli, R, Rey, F.A.
Deposit date:2021-10-28
Release date:2022-11-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:NANOBODIES AGAINST SARS-COV-2 NEUTRALIZE VARIANTS OF CONCERN AND EXPLORE CONFORMATIONAL DIFFERENCES ON THE SPIKE PROTEIN
To Be Published
6YPQ
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BU of 6ypq by Molmil
Crystal structure of native Phycocyanin from T. elongatus in spacegroup R32 at 1.29 Angstroms
Descriptor: C-phycocyanin alpha chain, C-phycocyanin beta chain, GLYCINE, ...
Authors:Feiler, C.G, Falke, S, Sarrou, I.
Deposit date:2020-04-16
Release date:2021-01-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:C-phycocyanin as a highly attractive model system in protein crystallography: unique crystallization properties and packing-diversity screening.
Acta Crystallogr D Struct Biol, 77, 2021
7Q3R
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BU of 7q3r by Molmil
Crystal structure of SARS-CoV-2 RBD in complex with the neutralizing nanobodies VHH-F04 and VHH-G09
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Spike glycoprotein, ...
Authors:Fernandez, I, Pederzoli, R, Rey, F.A.
Deposit date:2021-10-28
Release date:2022-11-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:NANOBODIES AGAINST SARS-COV-2 NEUTRALIZE VARIANTS OF CONCERN AND EXPLORE CONFORMATIONAL DIFFERENCES ON THE SPIKE PROTEIN
To Be Published
5MV8
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BU of 5mv8 by Molmil
Structure of human Myosin 7b C-terminal MyTH4-FERM domain in complex with harmonin-a PDZ3 domain
Descriptor: GLYCEROL, MAGNESIUM ION, Unconventional myosin-VIIb, ...
Authors:Yu, I, Sourigues, Y, Titus, M.A, Houdusse, A.
Deposit date:2017-01-16
Release date:2017-07-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Myosin 7 and its adaptors link cadherins to actin.
Nat Commun, 8, 2017
6D2P
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BU of 6d2p by Molmil
Crystal structure of IOMA-class CLK31 Fab from an HIV-1 naive donor in complex with a germline-targeting gp120 engineered outer domain eOD-GT8 at 2.6 A
Descriptor: GLYCEROL, Germline-targeting HIV-1 gp120 engineered outer domain eOD-GT8, IOMAclass naive CLK31 Fab heavy chain, ...
Authors:Sarkar, A, Wilson, I.A.
Deposit date:2018-04-13
Release date:2019-01-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The human naive B cell repertoire contains distinct subclasses for a germline-targeting HIV-1 vaccine immunogen.
Sci Transl Med, 10, 2018

223532

数据于2024-08-07公开中

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