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PDB: 17801 results

2IW4
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BU of 2iw4 by Molmil
CRYSTAL STRUCTURE OF BASILLUS SUBTILIS FAMILY II INORGANIC PYROPHOSPHATASE MUTANT, H98Q, IN COMPLEX WITH PNP
Descriptor: FE (III) ION, GLYCEROL, IMIDODIPHOSPHORIC ACID, ...
Authors:Fabrichniy, I.P, Lehtio, L, Oksanen, E, Goldman, A.
Deposit date:2006-06-26
Release date:2006-11-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:A Trimetal Site and Substrate Distortion in a Family II Inorganic Pyrophosphatase.
J.Biol.Chem., 282, 2007
8SFO
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BU of 8sfo by Molmil
WT CRISPR-Cas12a with a 20bp R-loop and nontarget strand in the RuvC active site.
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (35-MER), DNA (40-MER), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:WT CRISPR-Cas12a with a 20bp R-loop and nontarget strand in the RuvC active site.
To Be Published
4NPI
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BU of 4npi by Molmil
1.94 Angstroms X-ray crystal structure of NAD- and intermediate- bound alpha-aminomuconate-epsilon-semialdehyde dehydrogenase from Pseudomonas fluorescens
Descriptor: (2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoic acid, 2-aminomuconate 6-semialdehyde dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Huo, L, Davis, I, Liu, F, Iwaki, H, Hasegawa, Y, Liu, A.
Deposit date:2013-11-21
Release date:2014-12-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystallographic and spectroscopic snapshots reveal a dehydrogenase in action.
Nat Commun, 6, 2015
8SFN
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BU of 8sfn by Molmil
WT CRISPR-Cas12a with a 16bp R-loop and nontarget strand in the RuvC active site.
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (30-MER), DNA (31-MER), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:WT CRISPR-Cas12a with a 16bp R-loop and nontarget strand in the RuvC active site.
To Be Published
2IKC
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BU of 2ikc by Molmil
Crystal structure of sheep lactoperoxidase at 3.25 A resolution reveals the binding sites for formate
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Sheikh, I.A, Singh, N, Singh, A.K, Sharma, S, Singh, T.P.
Deposit date:2006-10-02
Release date:2006-10-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Crystal structure of sheep lactoperoxidase at 3.25 A resolution reveals the binding sites for formate
To be Published
8SFI
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BU of 8sfi by Molmil
WT CRISPR-Cas12a with a 8bp R-loop
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (5'-D(P*CP*TP*TP*AP*TP*CP*AP*CP*TP*AP*AP*AP*AP*GP*AP*TP*CP*GP*GP*AP*AP*G)-3'), DNA (5'-D(P*CP*TP*TP*CP*CP*GP*AP*TP*CP*TP*TP*TP*TP*AP*GP*TP*GP*AP*TP*A)-3'), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:WT CRISPR-Cas12a with a 8bp R-loop
To Be Published
8SFP
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BU of 8sfp by Molmil
WT CRISPR-Cas12a with the target strand in the RuvC active site.
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (40-MER), DNA (5'-D(P*CP*TP*TP*CP*CP*GP*AP*TP*CP*TP*TP*TP*TP*AP*GP*TP*GP*AP*TP*A)-3'), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:WT CRISPR-Cas12a with the target strand in the RuvC active site.
To Be Published
2BI6
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BU of 2bi6 by Molmil
NMR STUDY OF BROMELAIN INHIBITOR VI FROM PINEAPPLE STEM
Descriptor: BROMELAIN INHIBITOR VI
Authors:Hatano, K.-I.
Deposit date:1995-12-07
Release date:1996-04-03
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Solution structure of bromelain inhibitor IV from pineapple stem: structural similarity with Bowman-Birk trypsin/chymotrypsin inhibitor from soybean.
Biochemistry, 35, 1996
8SFH
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BU of 8sfh by Molmil
WT CRISPR-Cas12a with a 5bp R-loop
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (32-MER), RNA (27-MER)
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:WT CRISPR-Cas12a with a 5bp R-loop
To Be Published
1JYU
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BU of 1jyu by Molmil
Xray Structure of Grb2 SH2 Domain
Descriptor: GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2
Authors:Nioche, P, Liu, W.-Q, Broutin, I, Charbonnier, F, Latreille, M.-T, Vidal, M, Roques, B, Garbay, C, Ducruix, A.
Deposit date:2001-09-13
Release date:2002-03-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structures of the SH2 domain of Grb2: highlight on the binding of a new high-affinity inhibitor.
J.Mol.Biol., 315, 2002
8SFR
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BU of 8sfr by Molmil
WT CRISPR-Cas12a post nontarget strand cleavage.
Descriptor: CRISPR-associated endonuclease Cas12a, DNA (34-MER), DNA (5'-D(P*CP*TP*TP*CP*CP*GP*AP*TP*CP*TP*TP*TP*TP*AP*GP*TP*GP*AP*T)-3'), ...
Authors:Strohkendl, I, Taylor, D.W.
Deposit date:2023-04-11
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:WT CRISPR-Cas12a post nontarget strand cleavage.
To Be Published
4NTX
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BU of 4ntx by Molmil
Structure of acid-sensing ion channel in complex with snake toxin and amiloride
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3,5-DIAMINO-N-(AMINOIMINOMETHYL)-6-CHLOROPYRAZINECARBOXAMIDE, Acid-sensing ion channel 1, ...
Authors:Baconguis, I, Bohlen, C.J, Goehring, A, Julius, D, Gouaux, E.
Deposit date:2013-12-02
Release date:2014-02-19
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:X-ray structure of Acid-sensing ion channel 1-snake toxin complex reveals open state of a na(+)-selective channel.
Cell(Cambridge,Mass.), 156, 2014
4BG5
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BU of 4bg5 by Molmil
Lyme disease associated outer surface protein BBA65 from Borrelia burgdorferi
Descriptor: BBA65
Authors:Brangulis, K, Petrovskis, I, Kazaks, A, Tars, K.
Deposit date:2013-03-22
Release date:2014-04-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structural analysis of the outer surface proteins from Borrelia burgdorferi paralogous gene family 54 that are thought to be the key players in the pathogenesis of Lyme disease
J.Struct.Biol., 2020
1KDK
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BU of 1kdk by Molmil
THE STRUCTURE OF THE N-TERMINAL LG DOMAIN OF SHBG IN CRYSTALS SOAKED WITH EDTA
Descriptor: 5-ALPHA-DIHYDROTESTOSTERONE, Sex Hormone-Binding Globulin
Authors:Grishkovskaya, I, Avvakumov, G.V, Hammond, G.L, Muller, Y.A.
Deposit date:2001-11-13
Release date:2002-05-15
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Resolution of a disordered region at the entrance of the human sex hormone-binding globulin steroid-binding site.
J.Mol.Biol., 318, 2002
4NWT
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BU of 4nwt by Molmil
Crystal structure of the anti-human NGF Fab APE1531
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETATE ION, APE1531 Ab Fab heavy chain, ...
Authors:Verdino, P, Stanfield, R.L, Wilson, I.A.
Deposit date:2013-12-06
Release date:2014-10-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Nucleotide insertions and deletions complement point mutations to massively expand the diversity created by somatic hypermutation of antibodies.
J.Biol.Chem., 289, 2014
4Q6N
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BU of 4q6n by Molmil
Structural analysis of the tripeptide-bound form of Helicobacter pylori Csd4, a D,L-carboxypeptidase
Descriptor: CALCIUM ION, Conserved hypothetical secreted protein, GLYCEROL, ...
Authors:Kim, H.S, Kim, J, Im, H.N, An, D.R, Lee, M, Hesek, D, Mobashery, S, Kim, J.Y, Cho, K, Yoon, H.J, Han, B.W, Lee, B.I, Suh, S.W.
Deposit date:2014-04-23
Release date:2014-11-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural basis for the recognition of muramyltripeptide by Helicobacter pylori Csd4, a D,L-carboxypeptidase controlling the helical cell shape
Acta Crystallogr.,Sect.D, 70, 2014
1MJI
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BU of 1mji by Molmil
DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMPLEX
Descriptor: 50S ribosomal protein L5, 5S rRNA fragment, MAGNESIUM ION, ...
Authors:Perederina, A, Nevskaya, N, Nikonov, O, Nikulin, A, Dumas, P, Yao, M, Tanaka, I, Garber, M, Gongadze, G, Nikonov, S.
Deposit date:2002-08-28
Release date:2003-01-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Detailed analysis of RNA-protein interactions within the bacterial ribosomal protein L5/5S rRNA complex
RNA, 8, 2002
2GQL
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BU of 2gql by Molmil
Solution structure of Human Ni(II)-Sco1
Descriptor: NICKEL (II) ION, SCO1 protein homolog, mitochondrial
Authors:Banci, L, Bertini, I, Calderone, V, Ciofi-Baffoni, S, Mangani, S, Palumaa, P, Martinelli, M, Wang, S, Structural Proteomics in Europe (SPINE)
Deposit date:2006-04-21
Release date:2006-06-06
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:A hint for the function of human Sco1 from different structures.
Proc.Natl.Acad.Sci.Usa, 103, 2006
1MEN
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BU of 1men by Molmil
complex structure of human GAR Tfase and substrate beta-GAR
Descriptor: GLYCINAMIDE RIBONUCLEOTIDE, Phosphoribosylglycinamide formyltransferase
Authors:Zhang, Y, Desharnais, J, Greasley, S.E, Beardsley, G.P, Boger, D.L, Wilson, I.A.
Deposit date:2002-08-08
Release date:2002-12-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Crystal structures of human GAR Tfase of low and high pH and with substrate beta-GAR
Biochemistry, 41, 2002
1KVH
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BU of 1kvh by Molmil
NCSi-gb-bulge-DNA complex induced formation of a DNA bulge structure by a molecular wedge ligand-post-activated neocarzinostatin chromophore
Descriptor: 5'-D(*CP*CP*CP*GP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*AP*TP*TP*CP*GP*GP*G)-3', SPIRO[[7-METHOXY-5-METHYL-1,2-DIHYDRO-NAPHTHALENE]-3,1'-[5-HYDROXY-9-[2-METHYLAMINO-2,6-DIDEOXYGALACTOPYRANOSYL-OXY]-5-(2-OXO-[1,3]DIOXOLAN-4-YL)-3A,5,9,9A-TETRAHYDRO-3H-1-OXA-CYCLOPENTA[A]-S-INDACEN-2-ONE]]
Authors:Gao, X, Stassinopoulos, A, Ji, J, Kwon, Y, Bare, S, Goldberg, I.H.
Deposit date:2002-01-26
Release date:2002-06-19
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Induced formation of a DNA bulge structure by a molecular wedge ligand-postactivated neocarzinostatin chromophore.
Biochemistry, 41, 2002
2DI3
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BU of 2di3 by Molmil
Crystal structure of the transcriptional factor CGL2915 from Corynebacterium glutamicum
Descriptor: Bacterial regulatory proteins, GntR family, ZINC ION
Authors:Gao, Y.G, Yao, M, Tanaka, I.
Deposit date:2006-03-28
Release date:2007-03-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural and functional characterization of the LldR from Corynebacterium glutamicum: a transcriptional repressor involved in L-lactate and sugar utilization
Nucleic Acids Res., 36, 2008
4D0T
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BU of 4d0t by Molmil
GalNAc-T2 crystal soaked with UDP-GalNAc, EA2 peptide and manganese
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-galactopyranose, MANGANESE (II) ION, ...
Authors:Lira-Navarrete, E, Iglesias-Fernandez, J, Zandberg, W.F, Companon, I, Kong, Y, Corzana, F, Pinto, B.M, Clausen, H, Peregrina, J.M, Vocadlo, D, Rovira, C, Hurtado-Guerrero, R.
Deposit date:2014-04-30
Release date:2014-05-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Substrate-Guided Front-Face Reaction Revealed by Combined Structural Snapshots and Metadynamics for the Polypeptide N-Acetylgalactosaminyltransferase 2.
Angew.Chem.Int.Ed.Engl., 53, 2014
6DPX
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BU of 6dpx by Molmil
X-ray crystal structure of AmpC beta-lactamase with inhibitor
Descriptor: (3-{[(3-chloro-2-hydroxyphenyl)sulfonyl]amino}phenyl)acetic acid, Beta-lactamase
Authors:Singh, I.
Deposit date:2018-06-09
Release date:2018-07-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Ultra-large library docking for discovering new chemotypes.
Nature, 566, 2019
7VEI
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BU of 7vei by Molmil
Neutron structure of D2O-solvent lysozyme
Descriptor: CHLORIDE ION, Lysozyme C, NICKEL (II) ION
Authors:Chatake, T, Tanaka, I, Kusaka, K, Fujiwara, S.
Deposit date:2021-09-08
Release date:2022-04-06
Last modified:2023-11-29
Method:NEUTRON DIFFRACTION (2 Å)
Cite:Protonation states of hen egg-white lysozyme observed using D/H contrast neutron crystallography.
Acta Crystallogr D Struct Biol, 78, 2022
2DSR
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BU of 2dsr by Molmil
Structural Basis for the Inhibition of Insulin-like Growth Factors by IGF Binding Proteins
Descriptor: Insulin-like growth factor IB, Insulin-like growth factor-binding protein 4
Authors:Sitar, T, Popowicz, G.M, Siwanowicz, I, Huber, R, Holak, T.A.
Deposit date:2006-07-05
Release date:2006-08-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for the inhibition of insulin-like growth factors by insulin-like growth factor-binding proteins.
Proc.Natl.Acad.Sci.Usa, 103, 2006

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