Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 17822 件

1UU5
DownloadVisualize
BU of 1uu5 by Molmil
X-RAY CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMICOLA GRISEA CEL12A SOAKED WITH CELLOTETRAOSE
分子名称: ACETATE ION, ENDO-BETA-1,4-GLUCANASE, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
著者Berglund, G.I, Shaw, A, Stahlberg, J, Kenne, L, Driguez, T.H, Mitchinson, C, Sandgren, M.
登録日2003-12-15
公開日2004-09-16
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Crystal Complex Structures Reveal How Substrate is Bound in the -4 to the +2 Binding Sites of Humicola Grisea Cel12A
J.Mol.Biol., 342, 2004
2VEM
DownloadVisualize
BU of 2vem by Molmil
Structure-based enzyme engineering efforts with an inactive monomeric TIM variant: the importance of a single point mutation for generating an active site with suitable binding properties
分子名称: (3-bromo-2-oxo-propoxy)phosphonic acid, GLYCOSOMAL TRIOSEPHOSPHATE ISOMERASE, TERTIARY-BUTYL ALCOHOL
著者Alahuhta, M, Salin, M, Casteleijn, M.G, Kemmer, C, El-Sayed, I, Augustyns, K, Neubauer, P, Wierenga, R.K.
登録日2007-10-25
公開日2008-02-19
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure-Based Protein Engineering Efforts with a Monomeric Tim Variant: The Importance of a Single Point Mutation for Generating an Active Site with Suitable Binding Properties.
Protein Eng.Des.Sel., 21, 2008
3R38
DownloadVisualize
BU of 3r38 by Molmil
2.23 Angstrom resolution crystal structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase (murA) from Listeria monocytogenes EGD-e
分子名称: CHLORIDE ION, SULFATE ION, UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1
著者Halavaty, A.S, Minasov, G, Shuvalova, L, Dubrovska, I, Winsor, J, Peterson, S, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2011-03-15
公開日2011-03-23
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献2.23 Angstrom resolution crystal structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase (murA) from Listeria monocytogenes EGD-e
To be Published
5GK2
DownloadVisualize
BU of 5gk2 by Molmil
The structure of the H302A mutant of StlD
分子名称: Ketosynthase StlD
著者Mori, T, Dngfeng, Y, Morita, H, Abe, I.
登録日2016-07-03
公開日2017-07-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.201 Å)
主引用文献Structural Insight into the Enzymatic Formation of Bacterial Stilbene.
Cell Chem Biol, 23, 2016
1V43
DownloadVisualize
BU of 1v43 by Molmil
Crystal Structure of ATPase subunit of ABC Sugar Transporter
分子名称: sugar-binding transport ATP-binding protein
著者Ose, T, Fujie, T, Yao, M, Watanabe, N, Tanaka, I.
登録日2003-11-08
公開日2004-11-16
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of the ATP-binding cassette of multisugar transporter from Pyrococcus horikoshii OT3
Proteins, 57, 2004
7VEI
DownloadVisualize
BU of 7vei by Molmil
Neutron structure of D2O-solvent lysozyme
分子名称: CHLORIDE ION, Lysozyme C, NICKEL (II) ION
著者Chatake, T, Tanaka, I, Kusaka, K, Fujiwara, S.
登録日2021-09-08
公開日2022-04-06
最終更新日2023-11-29
実験手法NEUTRON DIFFRACTION (2 Å)
主引用文献Protonation states of hen egg-white lysozyme observed using D/H contrast neutron crystallography.
Acta Crystallogr D Struct Biol, 78, 2022
1V4N
DownloadVisualize
BU of 1v4n by Molmil
Structure of 5'-deoxy-5'-methylthioadenosine phosphorylase homologue from Sulfolobus tokodaii
分子名称: 271aa long hypothetical 5'-methylthioadenosine phosphorylase
著者Kitago, Y, Yasutake, Y, Sakai, N, Tsujimura, M, Yao, M, Watanabe, N, Kawarabayasi, Y, Tanaka, I.
登録日2003-11-14
公開日2005-01-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Crystal structure of Sulfolobus tokodaii MTAP
To be Published
6GWA
DownloadVisualize
BU of 6gwa by Molmil
Concanavalin B structure determined with data from the EuXFEL, the first MHz free electron laser
分子名称: Concanavalin B
著者Gruenbein, M.L, Gorel, A, Stricker, M, Bean, R, Bielecki, J, Doerner, K, Hartmann, E, Hilpert, M, Kloos, M, Letrun, R, Sztuk-Dambietz, J, Mancuso, A, Meserschmidt, M, Nass-Kovacs, G, Ramilli, M, Roome, C.M, Sato, T, Doak, R.B, Shoeman, R.L, Foucar, L, Colletier, J.P, Barends, T.R.M, Stan, C, Schlichting, I.
登録日2018-06-22
公開日2018-09-05
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Megahertz data collection from protein microcrystals at an X-ray free-electron laser.
Nat Commun, 9, 2018
1V30
DownloadVisualize
BU of 1v30 by Molmil
Crystal Structure Of Uncharacterized Protein PH0828 From Pyrococcus horikoshii
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Hypothetical UPF0131 protein PH0828
著者Tajika, Y, Sakai, N, Yao, M, Watanabe, N, Tanaka, I.
登録日2003-10-21
公開日2004-11-09
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal structure of hypothetical protein PH0828 from Pyrococcus horikoshii.
Proteins, 57, 2004
7VBQ
DownloadVisualize
BU of 7vbq by Molmil
Heterodimer structure of Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxIJ
分子名称: FE (III) ION, Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxI, Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxJ, ...
著者Li, X, Awakawa, T, Mori, T, Abe, I.
登録日2021-09-01
公開日2022-04-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Heterodimeric Non-heme Iron Enzymes in Fungal Meroterpenoid Biosynthesis.
J.Am.Chem.Soc., 143, 2021
4AKJ
DownloadVisualize
BU of 4akj by Molmil
Ligand controlled assembly of hexamers, dihexamers, and linear multihexamer structures by an engineered acylated insulin
分子名称: CHLORIDE ION, INSULIN A CHAIN, INSULIN B CHAIN, ...
著者Steensgaard, D.B, Schluckebier, G, Strauss, H.M, Norrman, M, Thomsen, J.K, Friderichsen, A.V, Havelund, S, Jonassen, I.
登録日2012-02-23
公開日2013-01-09
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Ligand Controlled Assembly of Hexamers, Dihexamers, and Linear Multihexamer Structures by the Engineered Acylated Insulin Degludec.
Biochemistry, 52, 2013
6APA
DownloadVisualize
BU of 6apa by Molmil
Crystal structure of TEM1 beta-lactamase mutant I263A
分子名称: Beta-lactamase TEM
著者Roose, B.W, Dmochowski, I.J.
登録日2017-08-17
公開日2018-08-22
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献A Structural Basis for129Xe Hyper-CEST Signal in TEM-1 beta-Lactamase.
Chemphyschem, 20, 2019
7VBR
DownloadVisualize
BU of 7vbr by Molmil
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxI
分子名称: Fe(II)/(alpha)ketoglutarate-dependent dioxygenase TlxI
著者Li, X, Awakawa, T, Mori, T, Abe, I.
登録日2021-09-01
公開日2022-04-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Heterodimeric Non-heme Iron Enzymes in Fungal Meroterpenoid Biosynthesis.
J.Am.Chem.Soc., 143, 2021
6H3B
DownloadVisualize
BU of 6h3b by Molmil
Lysozyme: Machining protein microcrystals for structure determination by electron diffraction
分子名称: CHLORIDE ION, Lysozyme C
著者Duyvesteyn, H.M.E, Ginn, H.M, Stuart, D.I.
登録日2018-07-18
公開日2018-09-12
最終更新日2022-03-30
実験手法ELECTRON CRYSTALLOGRAPHY (1.9 Å)
主引用文献Machining protein microcrystals for structure determination by electron diffraction.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5G1K
DownloadVisualize
BU of 5g1k by Molmil
A triple mutant of DsbG engineered for denitrosylation
分子名称: SULFATE ION, THIOL DISULFIDE INTERCHANGE PROTEIN DSBG
著者Tamu Dufe, V, Van Molle, I, Lafaye, C, Wahni, K, Boudier, A, Leroy, P, Collet, J.F, Messens, J.
登録日2016-03-28
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Sulfur Denitrosylation by an Engineered Trx-Like Dsbg Enzyme Identifies Nucleophilic Cysteine Hydrogen Bonds as Key Functional Determinant.
J.Biol.Chem., 291, 2016
1UNO
DownloadVisualize
BU of 1uno by Molmil
Crystal structure of a d,l-alternating peptide
分子名称: H-(L-TYR-D-TYR)4-LYS-OH
著者Alexopoulos, E, Kuesel, A, Uson, I, Diederichsen, U, Sheldrick, G.M.
登録日2003-09-11
公開日2004-09-24
最終更新日2019-07-24
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Solution and Structure of an Alternating D,L-Peptide
Acta Crystallogr.,Sect.D, 60, 2004
6CMN
DownloadVisualize
BU of 6cmn by Molmil
Co-Crystal Structure of HIV-1 TAR Bound to Lab-Evolved RRM TBP6.7
分子名称: TAR-Binding Protein 6.7, Trans-Activation Response RNA Element
著者Belashov, I.A, Wedekind, J.E.
登録日2018-03-05
公開日2018-06-06
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.796 Å)
主引用文献Structure of HIV TAR in complex with a Lab-Evolved RRM provides insight into duplex RNA recognition and synthesis of a constrained peptide that impairs transcription.
Nucleic Acids Res., 46, 2018
6CMR
DownloadVisualize
BU of 6cmr by Molmil
Closed structure of active SHP2 mutant E76D bound to SHP099 inhibitor
分子名称: 6-(4-azanyl-4-methyl-piperidin-1-yl)-3-[2,3-bis(chloranyl)phenyl]pyrazin-2-amine, Tyrosine-protein phosphatase non-receptor type 11
著者Padua, R.A.P, Sun, Y, Marko, I, Pitsawong, W, Kern, D.
登録日2018-03-06
公開日2018-11-14
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Mechanism of activating mutations and allosteric drug inhibition of the phosphatase SHP2.
Nat Commun, 9, 2018
5OMD
DownloadVisualize
BU of 5omd by Molmil
Crystal structure of S. cerevisiae Ddc2 N-terminal coiled-coil domain
分子名称: DNA damage checkpoint protein LCD1
著者Deshpande, I, Seeber, A, Shimada, K, Keusch, J.J, Gut, H, Gasser, S.M.
登録日2017-07-28
公開日2017-10-25
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Basis of Mec1-Ddc2-RPA Assembly and Activation on Single-Stranded DNA at Sites of Damage.
Mol. Cell, 68, 2017
1V7L
DownloadVisualize
BU of 1v7l by Molmil
Structure of 3-isopropylmalate isomerase small subunit from Pyrococcus horikoshii
分子名称: 3-isopropylmalate dehydratase small subunit
著者Yao, M, Kirita, T, Sakai, N, Tanaka, I.
登録日2003-12-18
公開日2004-11-16
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Crystal Structure of the Pyrococcus horikoshii Isopropylmalate Isomerase Small Subunit Provides Insight into the Dual Substrate Specificity of the Enzyme
J.Mol.Biol., 344, 2004
1UPH
DownloadVisualize
BU of 1uph by Molmil
HIV-1 Myristoylated Matrix
分子名称: GAG POLYPROTEIN
著者Tang, C, Loeliger, E, Luncsford, P, Kinde, I, Beckett, D, Summers, M.F.
登録日2003-10-01
公開日2004-01-08
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Entropic Switch Regulates Myristate Exposure in the HIV-1 Matrix Protein
Proc.Natl.Acad.Sci.USA, 101, 2004
4AC5
DownloadVisualize
BU of 4ac5 by Molmil
Lipidic sponge phase crystal structure of the Bl. viridis reaction centre solved using serial femtosecond crystallography
分子名称: 15-cis-1,2-dihydroneurosporene, BACTERIOCHLOROPHYLL B, BACTERIOPHEOPHYTIN B, ...
著者Johansson, L.C, Arnlund, D, White, T.A, Katona, G, DePonte, D.P, Weierstall, U, Doak, R.B, Shoeman, R.L, Lomb, L, Malmerberg, E, Davidsson, J, Nass, K, Liang, M, Andreasson, J, Aquila, A, Bajt, S, Barthelmess, M, Barty, A, Bogan, M.J, Bostedt, C, Bozek, J.D, Caleman, C, Coffee, R, Coppola, N, Ekeberg, T, Epp, S.W, Erk, B, Fleckenstein, H, Foucar, L, Graafsma, H, Gumprecht, L, Hajdu, J, Hampton, C.Y, Hartmann, R, Hartmann, A, Hauser, G, Hirsemann, H, Holl, P, Hunter, M.S, Kassemeyer, S, Kimmel, N, Kirian, R.A, Maia, F.R.N.C, Marchesini, S, Martin, A.V, Reich, C, Rolles, D, Rudek, B, Rudenko, A, Schlichting, I, Schulz, J, Seibert, M.M, Sierra, R, Soltau, H, Starodub, D, Stellato, F, Stern, S, Struder, L, Timneanu, N, Ullrich, J, Wahlgren, W.Y, Wang, X, Weidenspointner, G, Wunderer, C, Fromme, P, Chapman, H.N, Spence, J.C.H, Neutze, R.
登録日2011-12-14
公開日2012-02-15
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (8.2 Å)
主引用文献Lipidic Phase Membrane Protein Serial Femtosecond Crystallography.
Nat.Methods, 9, 2012
6CI5
DownloadVisualize
BU of 6ci5 by Molmil
Crystal structure of the formyltransferase PseJ from Anoxybacillus kamchatkensis in complex with UDP-4,6-dideoxy-4-formamido-L-AltNAc and tetrahydrofolate
分子名称: (2R,3R,4S,5R,6S)-3-(acetylamino)-5-(formylamino)-4-hydroxy-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name), N-[4-({[(6R)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid, SULFATE ION, ...
著者Reimer, J.M, Harb, I, Schmeing, T.M.
登録日2018-02-23
公開日2018-10-17
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.00003052 Å)
主引用文献Structural Insight into a Novel Formyltransferase and Evolution to a Nonribosomal Peptide Synthetase Tailoring Domain.
ACS Chem. Biol., 13, 2018
6CIA
DownloadVisualize
BU of 6cia by Molmil
Crystal structure of aldo-keto reductase from Klebsiella pneumoniae in complex with NADPH.
分子名称: Aldo/keto reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Lipowska, J, Leung, E.S, Shabalin, I.G, Grabowski, M, Almo, S.C, Satchell, K.J, Joachimiak, A, Lewinski, K, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2018-02-23
公開日2018-03-07
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of of aldo-keto reductase from Klebsiella pneumoniae in complex with NADPH.
to be published
5FM6
DownloadVisualize
BU of 5fm6 by Molmil
Double-heterohexameric rings of full-length Rvb1(ADP)Rvb2(apo)
分子名称: ADENOSINE-5'-DIPHOSPHATE, PHOSPHATE ION, RVB1, ...
著者Silva-Martin, N, Dauden, M.I, Glatt, S, Hoffmann, N.A, Mueller, C.W.
登録日2015-11-02
公開日2016-01-20
実験手法X-RAY DIFFRACTION (2.997 Å)
主引用文献The Combination of X-Ray Crystallography and Cryo-Electron Microscopy Provides Insight Into the Overall Architecture of the Dodecameric Rvb1/Rvb2 Complex.
Plos One, 11, 2016

223790

件を2024-08-14に公開中

PDB statisticsPDBj update infoContact PDBjnumon