Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 18034 件

4USC
DownloadVisualize
BU of 4usc by Molmil
Crystal structure of peroxidase from palm tree Chamaerops excelsa
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Bernardes, A, Santos, J.C, Textor, L.C, Cuadrado, N.H, Kostetsky, E.Y, Roig, M.G, Muniz, J.R.C, Shnyrov, V.L, Polikarpov, I.
登録日2014-07-07
公開日2015-05-27
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal Structure Analysis of Peroxidase from the Palm Tree Chamaerops Excelsa.
Biochimie, 111, 2015
4V92
DownloadVisualize
BU of 4v92 by Molmil
Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
分子名称: 18S RRNA, ES1, ES10, ...
著者Fernandez, I.S, Bai, X, Scheres, S.H.W, Ramakrishnan, V.
登録日2014-03-21
公開日2014-07-09
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Initiation of Translation by Cricket Paralysis Virus Ires Requires its Translocation in the Ribosome.
Cell(Cambridge,Mass.), 157, 2014
4W5Q
DownloadVisualize
BU of 4w5q by Molmil
The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8
分子名称: MAGNESIUM ION, PHENOL, Protein argonaute-2, ...
著者Schirle, N.T, MacRae, I.J.
登録日2014-08-18
公開日2014-11-12
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.101 Å)
主引用文献Gene regulation. Structural basis for microRNA targeting.
Science, 346, 2014
4V9H
DownloadVisualize
BU of 4v9h by Molmil
Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Tourigny, D.S, Fernandez, I.S, Kelley, A.C, Ramakrishnan, V.
登録日2013-03-25
公開日2014-07-09
最終更新日2014-12-10
実験手法X-RAY DIFFRACTION (2.857 Å)
主引用文献Elongation factor G bound to the ribosome in an intermediate state of translocation.
Science, 340, 2013
4UWX
DownloadVisualize
BU of 4uwx by Molmil
Structure of liprin-alpha3 in complex with mDia1 Diaphanous- inhibitory domain
分子名称: LIPRIN-ALPHA-3, NICKEL (II) ION, PROTEIN DIAPHANOUS HOMOLOG 1, ...
著者Brenig, J, de Boor, S, Knyphausen, P, Kuhlmann, N, Wroblowski, S, Baldus, L, Scislowski, L, Artz, O, Trauschies, P, Baumann, U, Neundorf, I, Lammers, M.
登録日2014-08-15
公開日2015-05-06
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural and Biochemical Basis for the Inhibitory Effect of Liprin-Alpha3 on Mouse Diaphanous 1 (Mdia1) Function.
J.Biol.Chem., 290, 2015
5K87
DownloadVisualize
BU of 5k87 by Molmil
crystal structure of malonate bound to methylaconitate isomerase PrpF from Shewanella oneidensis
分子名称: 2-methyl-aconitate isomerase, MALONATE ION
著者Rayment, I, Wetterhorn, K.
登録日2016-05-27
公開日2017-05-31
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.219 Å)
主引用文献The PrpF protein of Shewanella oneidensis MR-1 catalyzes the isomerization of 2-methyl-cis-aconitate during the catabolism of propionate via the AcnD-dependent 2-methylcitric acid cycle.
PLoS ONE, 12, 2017
5KHG
DownloadVisualize
BU of 5khg by Molmil
HCN2 CNBD in complex with cytidine-3', 5'-cyclic monophosphate (cCMP)
分子名称: 4-amino-1-[(2S,4aR,6R,7R,7aS)-2,7-dihydroxy-2-oxidotetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]pyrimidin-2(1H)-one, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2
著者Ng, L.C.T, Putrenko, I, Baronas, V, Van Petegem, F, Accili, E.A.
登録日2016-06-14
公開日2016-09-14
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.241 Å)
主引用文献Cyclic Purine and Pyrimidine Nucleotides Bind to the HCN2 Ion Channel and Variably Promote C-Terminal Domain Interactions and Opening.
Structure, 24, 2016
8S0L
DownloadVisualize
BU of 8s0l by Molmil
Crystal structure of the TMPRSS2 zymogen in complex with the nanobody A07
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Nanobody A07, ...
著者Duquerroy, S, Fernandez, I, Rey, F.
登録日2024-02-14
公開日2024-06-26
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of TMPRSS2 zymogen activation and recognition by the HKU1 seasonal coronavirus.
Cell, 187, 2024
5KD5
DownloadVisualize
BU of 5kd5 by Molmil
BT_4244 metallopeptidase from Bacteroides thetaiotaomicron
分子名称: 1,2-ETHANEDIOL, Metallopeptidase, PHOSPHATE ION, ...
著者Noach, I, Boraston, A.B.
登録日2016-06-07
公開日2017-01-11
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Recognition of protein-linked glycans as a determinant of peptidase activity.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8S0N
DownloadVisualize
BU of 8s0n by Molmil
Crystal structure of the TMPRSS2 zymogen in complex with the nanobody A07
分子名称: Transmembrane protease serine 2, nanobody A07
著者Duquerroy, S, Fernandez, I, Rey, F.
登録日2024-02-14
公開日2024-06-26
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis of TMPRSS2 zymogen activation and recognition by the HKU1 seasonal coronavirus.
Cell, 187, 2024
5K5F
DownloadVisualize
BU of 5k5f by Molmil
NMR structure of the HLTF HIRAN domain
分子名称: Helicase-like transcription factor
著者Bezsonova, I, Neculai, D, Korzhnev, D, Weigelt, J, Bountra, C, Edwards, A, Arrowsmith, C, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
登録日2016-05-23
公開日2016-06-08
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR structure of the HLTF HIRAN domain
To Be Published
9FFH
DownloadVisualize
BU of 9ffh by Molmil
Native capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
分子名称: Major capsid protein
著者Bardy, P, MacDonald, C.I.W, Jenkins, H.T, Chechik, M, Hart, S.J, Turkenburg, J.P, Blaza, J.N, Fogg, P.C.M, Antson, A.A.
登録日2024-05-23
公開日2024-06-12
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献A stargate mechanism of Microviridae genome delivery unveiled by cryogenic electron tomography.
Biorxiv, 2024
5JPW
DownloadVisualize
BU of 5jpw by Molmil
Molecular basis for protein recognition specificity of the DYNLT1/Tctex1 canonical binding groove. Characterization of the interaction with activin receptor IIB
分子名称: Dynein light chain Tctex-type 1,Cytoplasmic dynein 1 intermediate chain 2
著者Rodriguez-Crespo, I, Merino-Gracia, J, Bruix, M, Zamora-Carreras, H.
登録日2016-05-04
公開日2016-08-17
最終更新日2024-07-03
実験手法SOLUTION NMR
主引用文献Molecular Basis for the Protein Recognition Specificity of the Dynein Light Chain DYNLT1/Tctex1: CHARACTERIZATION OF THE INTERACTION WITH ACTIVIN RECEPTOR IIB.
J.Biol.Chem., 291, 2016
9FFG
DownloadVisualize
BU of 9ffg by Molmil
Empty capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
分子名称: Major capsid protein
著者Bardy, P, MacDonald, C.I.W, Jenkins, H.T, Byrom, L, Chechik, M, Hart, S.J, Turkenburg, J.P, Blaza, J.N, Fogg, P.C.M, Antson, A.A.
登録日2024-05-23
公開日2024-06-12
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献A stargate mechanism of Microviridae genome delivery unveiled by cryogenic electron tomography.
Biorxiv, 2024
5KKF
DownloadVisualize
BU of 5kkf by Molmil
Crystal structure of TEM1 beta-lactamase mutant I263L
分子名称: Beta-lactamase TEM
著者Roose, B.W, Dmochowski, I.J.
登録日2016-06-21
公開日2017-06-28
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献A Structural Basis for129Xe Hyper-CEST Signal in TEM-1 beta-Lactamase.
Chemphyschem, 2018
7TA5
DownloadVisualize
BU of 7ta5 by Molmil
Crystal structure of cyanophycin synthetase 2 from Gloeothece citriformis
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BICINE, D(-)-TARTARIC ACID, ...
著者Sharon, I, Schmeing, T.M.
登録日2021-12-20
公開日2022-03-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure and Function of the beta-Asp-Arg Polymerase Cyanophycin Synthetase 2.
Acs Chem.Biol., 17, 2022
5KK2
DownloadVisualize
BU of 5kk2 by Molmil
Architecture of fully occupied GluA2 AMPA receptor - TARP complex elucidated by single particle cryo-electron microscopy
分子名称: Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit
著者Zhao, Y, Chen, S, Yoshioka, C, Baconguis, I, Gouaux, E.
登録日2016-06-20
公開日2016-07-06
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (7.3 Å)
主引用文献Architecture of fully occupied GluA2 AMPA receptor-TARP complex elucidated by cryo-EM.
Nature, 536, 2016
9CRN
DownloadVisualize
BU of 9crn by Molmil
Crystal structure of Streptococcus pyogenes TglA
分子名称: GLYCEROL, SODIUM ION, Transglutaminase-like domain-containing protein
著者Campbell, I.R, Neiditch, M.B.
登録日2024-07-22
公開日2024-08-14
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Crystal structure of Streptococcus pyogenes TglA
To Be Published
9EQ5
DownloadVisualize
BU of 9eq5 by Molmil
CryoEM Structure of Phenylalanine Ammonia Lyase from Planctomyces brasiliencis
分子名称: Histidine ammonia-lyase, [(1R)-1-amino-2-phenylethyl]phosphonic acid
著者Duhoo, Y, Buslov, I, Desmons, S.
登録日2024-03-20
公開日2024-08-07
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (2.17 Å)
主引用文献Engineered Phenylalanine Ammonia-Lyases for the Enantioselective Synthesis of Aspartic Acid Derivatives.
Angew.Chem.Int.Ed.Engl., 63, 2024
5KZN
DownloadVisualize
BU of 5kzn by Molmil
Metabotropic Glutamate Receptor
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, MAGNESIUM ION, Metabotropic glutamate receptor 2
著者Chappell, M.D, Li, R, Smith, S.C, Dressman, B.A, Tromiczak, E.G, Tripp, A.E, Blanco, M.-J, Vetman, T, Quimby, S.J, Matt, J, Britton, T, Fivush, A.M, Schkeryantz, J.M, Mayhugh, D, Erickson, J.A, Bures, M, Jaramillo, C, Carpintero, M, de Diego, J.E, Barberis, M, Garcia-Cerrada, S, Soriano, J.F, Antonysamy, S, Atwell, S, MacEwan, I, Condon, B, Bradley, C, Wang, J, Zhang, A, Conners, K, Groshong, C, Wasserman, S.R, Koss, J.W, Witkin, J.M, Li, X, Overshiner, C, Wafford, K.A, Seidel, W, Wang, X.-S, Heinz, B.A, Swanson, S, Catlow, J, Bedwell, D, Monn, J.A, Mitch, C.H, Ornstein, P.
登録日2016-07-25
公開日2016-12-28
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Discovery of (1S,2R,3S,4S,5R,6R)-2-Amino-3-[(3,4-difluorophenyl)sulfanylmethyl]-4-hydroxy-bicyclo[3.1.0]hexane-2,6-dicarboxylic Acid Hydrochloride (LY3020371HCl): A Potent, Metabotropic Glutamate 2/3 Receptor Antagonist with Antidepressant-Like Activity.
J. Med. Chem., 59, 2016
5KJO
DownloadVisualize
BU of 5kjo by Molmil
X-ray structure of PcCel45A expressed in Aspergillus nidullans
分子名称: 1,2-ETHANEDIOL, Endoglucanase V-like protein
著者Godoy, A.S, Ramia, M.P, Camilo, C.M, Polikarpov, I.
登録日2016-06-20
公開日2017-06-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献X-ray structure of PcCel45A expressed in Aspergillus nidullans
To Be Published
8RM0
DownloadVisualize
BU of 8rm0 by Molmil
Cryo-EM structure of a Foamy Virus fusion glycoprotein stabilized in the prefusion conformation
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp130, ...
著者Fernandez, I, Backovic, M.
登録日2024-01-04
公開日2024-10-23
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structures of the Foamy virus fusion protein reveal an unexpected link with the F protein of paramyxo- and pneumoviruses.
Sci Adv, 10, 2024
8RM1
DownloadVisualize
BU of 8rm1 by Molmil
Cryo-EM structure of a Foamy Virus fusion glycoprotein in the postfusion conformation
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp130, ...
著者Fernandez, I, Backovic, M.
登録日2024-01-04
公開日2024-10-23
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structures of the Foamy virus fusion protein reveal an unexpected link with the F protein of paramyxo- and pneumoviruses.
Sci Adv, 10, 2024
7SWO
DownloadVisualize
BU of 7swo by Molmil
C98C7 Fab in complex with SARS-CoV-2 Spike 6P (RBD local reconstruction)
分子名称: C98C7 Fab heavy chain, C98C7 Fab light chain, Spike protein S1
著者Windsor, I.W, Tong, P, Wesemann, D.R, Harrison, S.C.
登録日2021-11-20
公開日2022-04-27
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Antibodies induced by an ancestral SARS-CoV-2 strain that cross-neutralize variants from Alpha to Omicron BA.1.
Sci Immunol, 7, 2022
7SWP
DownloadVisualize
BU of 7swp by Molmil
G32Q4 Fab in complex with SARS-CoV-2 Spike 6P (RBD local reconstruction)
分子名称: G32Q4 Fab heavy chain, G32Q4 Fab light chain, Spike protein S1
著者Windsor, I.W, Tong, P, Wesemann, D.R, Harrison, S.C.
登録日2021-11-20
公開日2022-04-27
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Antibodies induced by an ancestral SARS-CoV-2 strain that cross-neutralize variants from Alpha to Omicron BA.1.
Sci Immunol, 7, 2022

227344

件を2024-11-13に公開中

PDB statisticsPDBj update infoContact PDBjnumon