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PDB: 568 results

4DL7
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Human DNA polymerase eta fails to extend primer 2 nucleotide after cisplatin crosslink (Pt-GG4).
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, Cisplatin, DNA (5'-D(*TP*AP*CP*TP*CP*GP*GP*TP*CP*AP*CP*T)-3'), ...
Authors:Zhao, Y, Biertumpfel, C, Gregory, M, Hua, Y, Hanaoka, F, Yang, W.
Deposit date:2012-02-05
Release date:2012-05-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural Basis for Chemoresistance to Cisplatin Mediated by DNA Polymerase eta
Proc.Natl.Acad.Sci.USA, 109, 2012
4DL2
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Human DNA polymerase eta inserting dCMPNPP opposite CG template (GG0a)
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*CP*GP*GP*CP*TP*CP*AP*CP*AP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*TP*GP*TP*GP*AP*G)-3'), ...
Authors:Zhao, Y, Biertumpfel, C, Gregory, M, Hua, Y, Hanaoka, F, Yang, W.
Deposit date:2012-02-05
Release date:2012-05-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural Basis for Chemoresistance to Cisplatin Mediated by DNA Polymerase eta
Proc.Natl.Acad.Sci.USA, 109, 2012
4DL6
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Human DNA polymerase eta extending primer immediately after cisplatin crosslink (Pt-GG3).
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, Cisplatin, DNA (5'-D(*TP*AP*GP*TP*GP*TP*GP*CP*C)-3'), ...
Authors:Zhao, Y, Biertumpfel, C, Gregory, M, Hua, Y, Hanaoka, F, Yang, W.
Deposit date:2012-02-05
Release date:2012-05-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis for Chemoresistance to Cisplatin Mediated by DNA Polymerase eta
Proc.Natl.Acad.Sci.USA, 109, 2012
4DL3
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Human DNA polymerase eta inserting dCMPNPP opposite GG template (GG0b).
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*TP*AP*CP*GP*GP*TP*CP*AP*CP*AP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*TP*GP*TP*GP*AP*C)-3'), ...
Authors:Zhao, Y, Biertumpfel, C, Gregory, M, Hua, Y, Hanaoka, F, Yang, W.
Deposit date:2012-02-05
Release date:2012-05-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for Chemoresistance to Cisplatin Mediated by DNA Polymerase eta
Proc.Natl.Acad.Sci.USA, 109, 2012
4DL4
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Human DNA polymerase eta inserting dCMPNPP opposite the 3'G of cisplatin crosslinked Gs (Pt-GG1).
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, Cisplatin, DNA (5'-D(*TP*AP*GP*TP*GP*TP*GP*AP*G)-3'), ...
Authors:Zhao, Y, Biertumpfel, C, Gregory, M, Hua, Y.-J, Hanaoka, F, Yang, W.
Deposit date:2012-02-05
Release date:2012-05-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for Chemoresistance to Cisplatin Mediated by DNA Polymerase eta
Proc.Natl.Acad.Sci.USA, 109, 2012
1DME
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BU of 1dme by Molmil
THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF CALLINECTES SAPIDUS METALLOTHIONEIN-I DETERMINED BY HOMONUCLEAR AND HETERONUCLEAR MAGNETIC RESONANCE SPECTOSCOPY
Descriptor: CADMIUM ION, CD6 METALLOTHIONEIN-1
Authors:Narula, S.S, Brouwer, M, Hua, Y, Armitage, I.M.
Deposit date:1994-11-22
Release date:1995-02-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of Callinectes sapidus metallothionein-1 determined by homonuclear and heteronuclear magnetic resonance spectroscopy.
Biochemistry, 34, 1995
1DMC
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BU of 1dmc by Molmil
THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF CALLINECTES SAPIDUS METALLOTHIONEIN-I DETERMINED BY HOMONUCLEAR AND HETERONUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
Descriptor: CADMIUM ION, CD6 METALLOTHIONEIN-1
Authors:Narula, S.S, Brouwer, M, Hua, Y, Armitage, I.M.
Deposit date:1994-11-22
Release date:1995-02-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of Callinectes sapidus metallothionein-1 determined by homonuclear and heteronuclear magnetic resonance spectroscopy.
Biochemistry, 34, 1995
1DMD
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BU of 1dmd by Molmil
THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF CALLINECTES SAPIDUS METALLOTHIONEIN-I DETERMINED BY HOMONUCLEAR AND HETERONUCLEAR MAGNETIC RESONANCE SPECTOSCOPY
Descriptor: CADMIUM ION, CD6 METALLOTHIONEIN-1
Authors:Narula, S.S, Brouwer, M, Hua, Y, Armitage, I.M.
Deposit date:1994-11-22
Release date:1995-02-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of Callinectes sapidus metallothionein-1 determined by homonuclear and heteronuclear magnetic resonance spectroscopy.
Biochemistry, 34, 1995
1DMF
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BU of 1dmf by Molmil
THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF CALLINECTES SAPIDUS METALLOTHIONEIN-I DETERMINED BY HOMONUCLEAR AND HETERONUCLEAR MAGNETIC RESONANCE SPECTOSCOPY
Descriptor: CADMIUM ION, CD6 METALLOTHIONEIN-1
Authors:Narula, S.S, Brouwer, M, Hua, Y, Armitage, I.M.
Deposit date:1994-11-22
Release date:1995-02-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of Callinectes sapidus metallothionein-1 determined by homonuclear and heteronuclear magnetic resonance spectroscopy.
Biochemistry, 34, 1995
5IAZ
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BU of 5iaz by Molmil
The C-terminal domain of rice beta-galactosidase 1
Descriptor: beta-galactosidase 1
Authors:Rimlumduan, T, Hua, Y.-l, Tanaka, T, Ketudat-Cairns, J.R.
Deposit date:2016-02-22
Release date:2016-08-10
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of a plant beta-galactosidase C-terminal domain
Biochim.Biophys.Acta, 1864, 2016
5FJS
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BU of 5fjs by Molmil
Bacterial beta-glucosidase reveals the structural and functional basis of genetic defects in human glucocerebrosidase 2 (GBA2)
Descriptor: CALCIUM ION, GLUCOSYLCERAMIDASE
Authors:Charoenwattanasatien, R, Pengthaisong, S, Breen, I, Mutoha, R, Sansenya, S, Hua, Y, Tankrathok, A, Wu, L, Songsiriritthigul, C, Tanaka, H, Williams, S.J, Davies, G.J, Kurisu, G, Ketudat Cairns, J.R.
Deposit date:2015-10-12
Release date:2016-05-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Bacterial Beta-Glucosidase Reveals the Structural and Functional Basis of Genetic Defects in Human Glucocerebrosidase 2 (Gba2)
Acs Chem.Biol., 11, 2016
5BX5
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BU of 5bx5 by Molmil
Crystal structure of Thermoanaerobacterium xylanolyticum GH116 beta-glucosidase with glucose
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, GLYCEROL, ...
Authors:Charoenwattanasatien, R, Pengthaisong, S, Sansenya, S, Mutoh, R, Hua, Y, Tanaka, H, Kurisu, G, Ketudat Cairns, J.R.
Deposit date:2015-06-08
Release date:2016-05-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Bacterial beta-Glucosidase Reveals the Structural and Functional Basis of Genetic Defects in Human Glucocerebrosidase 2 (GBA2)
Acs Chem.Biol., 11, 2016
4XWT
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BU of 4xwt by Molmil
Crystal structure of RNase J complexed with UMP
Descriptor: DR2417, GLYCEROL, MANGANESE (II) ION, ...
Authors:Lu, M, Zhang, H, Xu, Q, Hua, Y, Zhao, Y.
Deposit date:2015-01-29
Release date:2015-12-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.003 Å)
Cite:Structural insights into catalysis and dimerization enhanced exonuclease activity of RNase J
Nucleic Acids Res., 43, 2015
3WBA
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BU of 3wba by Molmil
Rice Os3BGlu6 E178Q with Covalent Glucosyl Moiety from p-nitrophenyl glucopyranoside.
Descriptor: Beta-glucosidase 6, GLYCEROL, alpha-D-glucopyranose
Authors:Sansenya, S, Hua, Y, Cairns, J.R.K.
Deposit date:2013-05-14
Release date:2013-09-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Enzymatic and structural characterization of hydrolysis of gibberellin A4 glucosyl ester by a rice beta-d-glucosidase
Arch.Biochem.Biophys., 537, 2013
3WBE
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BU of 3wbe by Molmil
Rice Os3BGlu6 Beta-Glucosidase E178Q mutant in a covalent complex with Glc from GA4GE.
Descriptor: Beta-glucosidase 6, GLYCEROL, alpha-D-glucopyranose
Authors:Sansenya, S, Hua, Y, Cairns, J.R.K.
Deposit date:2013-05-14
Release date:2013-09-04
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Enzymatic and structural characterization of hydrolysis of gibberellin A4 glucosyl ester by a rice beta-d-glucosidase
Arch.Biochem.Biophys., 537, 2013
4XWW
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BU of 4xww by Molmil
Crystal structure of RNase J complexed with RNA
Descriptor: DR2417, GLYCEROL, MANGANESE (II) ION, ...
Authors:Lu, M, Zhang, H, Xu, Q, Hua, Y, Zhao, Y.
Deposit date:2015-01-29
Release date:2015-12-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insights into catalysis and dimerization enhanced exonuclease activity of RNase J
Nucleic Acids Res., 43, 2015
5H7E
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BU of 5h7e by Molmil
Crystal Structure of native drCPDase
Descriptor: GLYCEROL, RNA 2',3'-cyclic phosphodiesterase, SULFATE ION
Authors:Han, W, Hua, Y, Zhao, Y.
Deposit date:2016-11-18
Release date:2017-09-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the RNA 2',3'-cyclic phosphodiesterase from Deinococcus radiodurans
Acta Crystallogr F Struct Biol Commun, 73, 2017
5H7F
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BU of 5h7f by Molmil
Crystal Structure of Mn-derivative drCPDase
Descriptor: RNA 2',3'-cyclic phosphodiesterase, SULFATE ION
Authors:Han, W, Hua, Y, Zhao, Y.
Deposit date:2016-11-18
Release date:2017-11-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:Crystal Structure of Mn-derivative drCPDase
To be published
6MO1
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BU of 6mo1 by Molmil
Structure of dengue virus protease with an allosteric Inhibitor that blocks replication
Descriptor: 5-[4-(aminomethyl)phenyl]-6-[4-(furan-3-yl)phenyl]-N-[(piperidin-4-yl)methyl]pyrazin-2-amine, FLAVIVIRUS_NS2B/Peptidase S7
Authors:Lin, Y.-L, Hua, Y, Nie, S, Wu, J, Wu, F, Huo, T, Yao, Y, Song, Y.
Deposit date:2018-10-03
Release date:2019-05-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Discovery, X-ray Crystallography and Antiviral Activity of Allosteric Inhibitors of Flavivirus NS2B-NS3 Protease.
J.Am.Chem.Soc., 141, 2019
6MO0
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BU of 6mo0 by Molmil
Structure of dengue virus protease with an allosteric Inhibitor that blocks replication
Descriptor: 1-(4-{3-[4-(furan-3-yl)phenyl]-5-[(piperidin-4-yl)methoxy]pyrazin-2-yl}phenyl)methanamine, FLAVIVIRUS_NS2B/Peptidase S7
Authors:Lin, Y.-L, Nie, S, Hua, Y, Wu, J, Wu, F, Huo, T, Yao, Y, Song, Y.
Deposit date:2018-10-03
Release date:2019-05-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Discovery, X-ray Crystallography and Antiviral Activity of Allosteric Inhibitors of Flavivirus NS2B-NS3 Protease.
J. Am. Chem. Soc., 141, 2019
6MO2
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BU of 6mo2 by Molmil
Structure of dengue virus protease with an allosteric Inhibitor that blocks replication
Descriptor: 1-(4-{5-[(piperidin-4-yl)methoxy]-3-[4-(1H-pyrazol-4-yl)phenyl]pyrazin-2-yl}phenyl)methanamine, FLAVIVIRUS_NS2B/Peptidase S7
Authors:Lin, Y.-L, Nie, S, Hua, Y, Wu, J, Wu, F, Huo, T, Yao, Y, Song, Y.
Deposit date:2018-10-03
Release date:2019-05-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Discovery, X-ray Crystallography and Antiviral Activity of Allosteric Inhibitors of Flavivirus NS2B-NS3 Protease.
J.Am.Chem.Soc., 141, 2019
5F56
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BU of 5f56 by Molmil
Structure of RecJ complexed with DNA and SSB-ct
Descriptor: ALA-ASP-LEU-PRO-PHE, DNA (5'-D(*CP*TP*GP*AP*TP*GP*GP*CP*A)-3'), MANGANESE (II) ION, ...
Authors:Zhao, Y, Hua, Y, Cheng, K.
Deposit date:2015-12-04
Release date:2016-06-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for DNA 5 -end resection by RecJ
Elife, 5, 2016
4OCH
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BU of 4och by Molmil
Apo structure of Smr domain of MutS2 from Deinococcus radiodurans
Descriptor: Endonuclease MutS2, GLYCEROL
Authors:Zhang, H, Zhao, Y, Xu, Q, Hua, Y.J.
Deposit date:2014-01-09
Release date:2014-06-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.4001 Å)
Cite:Structural and functional studies of MutS2 from Deinococcus radiodurans.
Dna Repair, 21, 2014
4J9P
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BU of 4j9p by Molmil
Human DNA polymerase eta-DNA postinsertion binary complex with TA base pair
Descriptor: DNA (5'-D(*C*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*TP*CP*AP*TP*A)-3'), DNA polymerase eta, ...
Authors:Zhao, Y, Gregory, M, Biertumpfel, C, Hua, Y, Hanaoka, F, Yang, W.
Deposit date:2013-02-16
Release date:2013-05-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mechanism of somatic hypermutation at the WA motif by human DNA polymerase eta.
Proc.Natl.Acad.Sci.USA, 110, 2013
4J9N
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BU of 4j9n by Molmil
Human DNA polymerase eta-DNA ternary complex: misincorporation G opposite T after a G at the primer 3' end (GA/G)
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA, DNA polymerase eta, ...
Authors:Zhao, Y, Gregory, M, Biertumpfel, C, Hua, Y, Hanaoka, F, Yang, W.
Deposit date:2013-02-16
Release date:2013-05-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.956 Å)
Cite:Mechanism of somatic hypermutation at the WA motif by human DNA polymerase eta.
Proc.Natl.Acad.Sci.USA, 110, 2013

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