2Z4H
| Crystal structure of the Cpx pathway activator NlpE from Escherichia coli | Descriptor: | Copper homeostasis protein cutF, SULFATE ION | Authors: | Hirano, Y, Hossain, M.M, Takeda, K, Tokuda, H, Miki, K. | Deposit date: | 2007-06-18 | Release date: | 2007-09-04 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Structural Studies of the Cpx Pathway Activator NlpE on the Outer Membrane of Escherichia coli Structure, 15, 2007
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3X34
| Crystal structure of the reduced form of the solubilized domain of porcine cytochrome b5 in form 1 crystal | Descriptor: | CALCIUM ION, Cytochrome b5, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Hirano, Y, Kimura, S, Tamada, T. | Deposit date: | 2015-01-14 | Release date: | 2015-07-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (0.76 Å) | Cite: | High-resolution crystal structures of the solubilized domain of porcine cytochrome b5. Acta Crystallogr.,Sect.D, 71, 2015
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3X32
| Crystal structure of the oxidized form of the solubilized domain of porcine cytochrome b5 in form 1 crystal | Descriptor: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, Cytochrome b5, ... | Authors: | Hirano, Y, Kimura, S, Tamada, T. | Deposit date: | 2015-01-14 | Release date: | 2015-07-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (0.83 Å) | Cite: | High-resolution crystal structures of the solubilized domain of porcine cytochrome b5. Acta Crystallogr.,Sect.D, 71, 2015
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3X35
| Crystal structure of the reduced form of the solubilized domain of porcine cytochrome b5 in form 2 crystal | Descriptor: | ACETATE ION, Cytochrome b5, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Hirano, Y, Kimura, S, Tamada, T. | Deposit date: | 2015-01-14 | Release date: | 2015-07-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (0.95 Å) | Cite: | High-resolution crystal structures of the solubilized domain of porcine cytochrome b5. Acta Crystallogr.,Sect.D, 71, 2015
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3X33
| Crystal structure of the oxidized form of the solubilized domain of porcine cytochrome b5 in form 2 crystal | Descriptor: | ACETATE ION, Cytochrome b5, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Hirano, Y, Kimura, S, Tamada, T. | Deposit date: | 2015-01-14 | Release date: | 2015-07-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (0.93 Å) | Cite: | High-resolution crystal structures of the solubilized domain of porcine cytochrome b5. Acta Crystallogr.,Sect.D, 71, 2015
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6L46
| High-resolution neutron and X-ray joint refined structure of copper-containing nitrite reductase from Geobacillus thermodenitrificans | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, COPPER (II) ION, ... | Authors: | Fukuda, Y, Hirano, Y, Kusaka, K, Inoue, T, Tamada, T. | Deposit date: | 2019-10-16 | Release date: | 2020-02-12 | Last modified: | 2024-04-03 | Method: | NEUTRON DIFFRACTION (1.3 Å), X-RAY DIFFRACTION | Cite: | High-resolution neutron crystallography visualizes an OH-bound resting state of a copper-containing nitrite reductase. Proc.Natl.Acad.Sci.USA, 117, 2020
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6M3D
| X-ray crystal structure of tandemly connected engrailed homeodomains (EHD) with R53A mutations and DNA complex | Descriptor: | DNA (5'-D(*GP*GP*AP*TP*TP*AP*GP*GP*AP*TP*TP*A)-3'), DNA (5'-D(*TP*AP*AP*TP*CP*CP*TP*AP*AP*TP*CP*C)-3'), SODIUM ION, ... | Authors: | Sunami, T, Hirano, Y, Tamada, T, Kono, H. | Deposit date: | 2020-03-03 | Release date: | 2020-09-16 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Structural basis for designing an array of engrailed homeodomains. Acta Crystallogr D Struct Biol, 76, 2020
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5WQR
| High resolution structure of high-potential iron-sulfur protein in the reduced state | Descriptor: | GLYCEROL, High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, ... | Authors: | Ohno, H, Takeda, K, Niwa, S, Tsujinaka, T, Hanazono, Y, Hirano, Y, Miki, K. | Deposit date: | 2016-11-28 | Release date: | 2017-06-07 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (0.8 Å) | Cite: | Crystallographic characterization of the high-potential iron-sulfur protein in the oxidized state at 0.8 angstrom resolution PLoS ONE, 12, 2017
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5WQQ
| High resolution structure of high-potential iron-sulfur protein in the oxidized state | Descriptor: | GLYCEROL, High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, ... | Authors: | Ohno, H, Takeda, K, Niwa, S, Tsujinaka, T, Hanazono, Y, Hirano, Y, Miki, K. | Deposit date: | 2016-11-28 | Release date: | 2017-06-07 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (0.8 Å) | Cite: | Crystallographic characterization of the high-potential iron-sulfur protein in the oxidized state at 0.8 angstrom resolution PLoS ONE, 12, 2017
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4P9T
| Structure of the free form of the N-terminal VH1 domain of monomeric alpha-catenin | Descriptor: | 1,2-ETHANEDIOL, Catenin alpha-2, DI(HYDROXYETHYL)ETHER, ... | Authors: | Shibahara, T, Hirano, Y, Hakoshima, T. | Deposit date: | 2014-04-04 | Release date: | 2015-04-29 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structure of the free form of the N-terminal VH1 domain of monomeric alpha-catenin. Febs Lett., 589, 2015
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7VOS
| High-resolution neutron and X-ray joint refined structure of high-potential iron-sulfur protein in the oxidized state | Descriptor: | AMMONIUM ION, GLYCEROL, High-potential iron-sulfur protein, ... | Authors: | Hanazono, Y, Hirano, Y, Takeda, K, Kusaka, K, Tamada, T, Miki, K. | Deposit date: | 2021-10-14 | Release date: | 2022-06-01 | Last modified: | 2024-04-03 | Method: | NEUTRON DIFFRACTION (0.66 Å), X-RAY DIFFRACTION | Cite: | Revisiting the concept of peptide bond planarity in an iron-sulfur protein by neutron structure analysis. Sci Adv, 8, 2022
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8IHY
| X-ray crystal structure of Q387E mutant of endo-1,4-beta glucanase from Eisenia fetida | Descriptor: | CALCIUM ION, Endoglucanase, GLYCEROL, ... | Authors: | Kuroki, C, Hirano, Y, Nakazawa, M, Sakamoto, T, Tamada, T, Ueda, M. | Deposit date: | 2023-02-24 | Release date: | 2023-12-06 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | A single mutation Asp43Arg was increased 2.5-fold the catalytic activity and maintained the stability of cold-adapted endo-1,4-beta glucanase (Ef-EG2) from Eisenia fetida. Curr Res Biotechnol, 5, 2023
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8IHW
| X-ray crystal structure of D43R mutant of endo-1,4-beta glucanase from Eisenia fetida | Descriptor: | CALCIUM ION, Endoglucanase, GLYCEROL, ... | Authors: | Kuroki, C, Hirano, Y, Nakazawa, M, Sakamoto, T, Tamada, T, Ueda, M. | Deposit date: | 2023-02-24 | Release date: | 2023-12-06 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | A single mutation Asp43Arg was increased 2.5-fold the catalytic activity and maintained the stability of cold-adapted endo-1,4-beta glucanase (Ef-EG2) from Eisenia fetida. Curr Res Biotechnol, 5, 2023
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8IHX
| X-ray crystal structure of N372D mutant of endo-1,4-beta glucanase from Eisenia fetida | Descriptor: | CALCIUM ION, Endoglucanase, GLYCEROL, ... | Authors: | Kuroki, C, Hirano, Y, Nakazawa, M, Sakamoto, T, Tamada, T, Ueda, M. | Deposit date: | 2023-02-24 | Release date: | 2023-12-06 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | A single mutation Asp43Arg was increased 2.5-fold the catalytic activity and maintained the stability of cold-adapted endo-1,4-beta glucanase (Ef-EG2) from Eisenia fetida. Curr Res Biotechnol, 5, 2023
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7CQY
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6L8A
| Tetrathionate hydrolase from Acidithiobacillus ferrooxidans | Descriptor: | BETA-ALANINE, GLYCINE, SULFATE ION, ... | Authors: | Tamada, T, Hirano, Y. | Deposit date: | 2019-11-05 | Release date: | 2020-11-11 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.95004809 Å) | Cite: | Reaction mechanism of tetrathionate hydrolysis based on the crystal structure of tetrathionate hydrolase from Acidithiobacillus ferrooxidans. Protein Sci., 30, 2020
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3W05
| Crystal structure of Oryza sativa DWARF14 (D14) in complex with PMSF | Descriptor: | 1,2-ETHANEDIOL, Dwarf 88 esterase, phenylmethanesulfonic acid | Authors: | Kagiyama, M, Hirano, Y, Mori, T, Kim, S.Y, Kyozuka, J, Seto, Y, Yamaguchi, S, Hakoshima, T. | Deposit date: | 2012-10-19 | Release date: | 2013-01-23 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.58 Å) | Cite: | Structures of D14 and D14L in the strigolactone and karrikin signaling pathways Genes Cells, 18, 2013
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3W06
| Crystal structure of Arabidopsis thaliana DWARF14 Like (AtD14L) | Descriptor: | 1,2-ETHANEDIOL, Hydrolase, alpha/beta fold family protein | Authors: | Kagiyama, M, Hirano, Y, Mori, T, Kim, S.Y, Kyozuka, J, Seto, Y, Yamaguchi, S, Hakoshima, T. | Deposit date: | 2012-10-19 | Release date: | 2013-01-23 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.15 Å) | Cite: | Structures of D14 and D14L in the strigolactone and karrikin signaling pathways Genes Cells, 18, 2013
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3W04
| Crystal structure of Oryza sativa DWARF14 (D14) | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... | Authors: | Kagiyama, M, Hirano, Y, Mori, T, Kim, S.Y, Kyozuka, J, Seto, Y, Yamaguchi, S, Hakoshima, T. | Deposit date: | 2012-10-19 | Release date: | 2013-01-23 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Structures of D14 and D14L in the strigolactone and karrikin signaling pathways Genes Cells, 18, 2013
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3AAC
| Small heat shock protein hsp14.0 with the mutations of I120F and I122F in the form II crystal | Descriptor: | Putative uncharacterized protein ST1653 | Authors: | Takeda, K, Hayashi, T, Abe, T, Hirano, Y, Hanazono, Y, Yohda, M, Miki, K. | Deposit date: | 2009-11-13 | Release date: | 2010-11-17 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Dimer structure and conformational variability in the N-terminal region of an archaeal small heat shock protein, StHsp14.0 J.Struct.Biol., 174, 2011
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3AAB
| Small heat shock protein hsp14.0 with the mutations of I120F and I122F in the form I crystal | Descriptor: | GLYCEROL, ISOPROPYL ALCOHOL, Putative uncharacterized protein ST1653 | Authors: | Takeda, K, Hayashi, T, Abe, T, Hirano, Y, Hanazono, Y, Yohda, M, Miki, K. | Deposit date: | 2009-11-13 | Release date: | 2010-11-17 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.851 Å) | Cite: | Dimer structure and conformational variability in the N-terminal region of an archaeal small heat shock protein, StHsp14.0 J.Struct.Biol., 174, 2011
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3WX2
| Mouse Cereblon thalidomide binding domain, native | Descriptor: | Protein cereblon, SULFATE ION, ZINC ION | Authors: | Mori, T, Ito, T, Hirano, Y, Yamaguchi, Y, Handa, H, Hakoshima, T. | Deposit date: | 2014-07-10 | Release date: | 2014-08-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structure of the human Cereblon-DDB1-lenalidomide complex reveals basis for responsiveness to thalidomide analogs Nat.Struct.Mol.Biol., 21, 2014
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3WX1
| Mouse Cereblon thalidomide binding domain, selenomethionine derivative | Descriptor: | Protein cereblon, SULFATE ION, ZINC ION | Authors: | Mori, T, Ito, T, Hirano, Y, Yamaguchi, Y, Handa, H, Hakoshima, T. | Deposit date: | 2014-07-10 | Release date: | 2014-08-06 | Last modified: | 2014-09-17 | Method: | X-RAY DIFFRACTION (1.93 Å) | Cite: | Structure of the human Cereblon-DDB1-lenalidomide complex reveals basis for responsiveness to thalidomide analogs Nat.Struct.Mol.Biol., 21, 2014
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3W6X
| Yeast N-acetyltransferase Mpr1 in complex with CHOP | Descriptor: | (4S)-4-hydroxy-L-proline, CHLORIDE ION, HEXAETHYLENE GLYCOL, ... | Authors: | Nasuno, R, Hirano, Y, Itoh, T, Hakoshima, T, Hibi, T, Takagi, H. | Deposit date: | 2013-02-25 | Release date: | 2013-08-07 | Last modified: | 2023-12-06 | Method: | X-RAY DIFFRACTION (2.299 Å) | Cite: | Structural and functional analysis of the yeast N-acetyltransferase Mpr1 involved in oxidative stress tolerance via proline metabolism Proc.Natl.Acad.Sci.USA, 110, 2013
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3W6S
| yeast N-acetyltransferase Mpr1 involved in oxidative stress tolerance via proline metabolism | Descriptor: | HEXAETHYLENE GLYCOL, MAGNESIUM ION, MPR1 protein | Authors: | Nasuno, R, Hirano, Y, Itoh, T, Hakoshima, T, Hibi, T, Takagi, H. | Deposit date: | 2013-02-21 | Release date: | 2013-07-17 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural and functional analysis of the yeast N-acetyltransferase Mpr1 involved in oxidative stress tolerance via proline metabolism Proc.Natl.Acad.Sci.USA, 110, 2013
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