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PDB: 2026 results

5MFG
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BU of 5mfg by Molmil
Designed armadillo repeat protein YIIIM5AII in complex with peptide (RR)4
Descriptor: (RR)4, CALCIUM ION, YIIIM5AII
Authors:Hansen, S, Ernst, P, Reichen, C, Ewald, C, Mittl, P, Plueckthun, A.
Deposit date:2016-11-18
Release date:2017-09-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Curvature of designed armadillo repeat proteins allows modular peptide binding.
J. Struct. Biol., 201, 2018
5H4D
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BU of 5h4d by Molmil
Crystal structure of hSIRT3 in complex with a specific agonist Amiodarone hydrochloride
Descriptor: (2-butyl-1-benzofuran-3-yl){4-[2-(diethylamino)ethoxy]-3,5-diiodophenyl}methanone, 7-AMINO-4-METHYL-CHROMEN-2-ONE, ARG-HIS-LYS, ...
Authors:Zhang, S, Fu, L, Liu, J, Liu, B.
Deposit date:2016-10-31
Release date:2017-11-08
Last modified:2023-04-05
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Crystal structure of hSIRT3 in complex with a specific agonist Amiodarone hydrochloride
To Be Published
7ZLO
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BU of 7zlo by Molmil
Crystal structure of SOCS2:ElonginB:ElonginC in complex with compound 12
Descriptor: Elongin-B, Elongin-C, Suppressor of cytokine signaling 2, ...
Authors:Ramachandran, S, Ciulli, A, Makukhin, N.
Deposit date:2022-04-15
Release date:2023-04-26
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Structure-based design of a phosphotyrosine-masked covalent ligand targeting the E3 ligase SOCS2.
Nat Commun, 14, 2023
5NLW
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BU of 5nlw by Molmil
Structure of Nb36 crystal form 2
Descriptor: SULFATE ION, nanobody Nb36
Authors:Hansen, S.B, Andersen, K.R, Laursen, N.S, Andersen, G.R.
Deposit date:2017-04-05
Release date:2017-05-31
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Introducing site-specific cysteines into nanobodies for mercury labelling allows de novo phasing of their crystal structures.
Acta Crystallogr D Struct Biol, 73, 2017
5YY5
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BU of 5yy5 by Molmil
Structural definition of a unique neutralization epitope on the receptor-binding domain of MERS-CoV spike glycoprotein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain, Light chain, ...
Authors:Zhang, S, Wang, P, Zhou, P, Wang, X, Zhang, L.
Deposit date:2017-12-08
Release date:2018-08-01
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Definition of a Unique Neutralization Epitope on the Receptor-Binding Domain of MERS-CoV Spike Glycoprotein
Cell Rep, 24, 2018
5NM0
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BU of 5nm0 by Molmil
Nb36 Ser85Cys with Hg, crystal form 1
Descriptor: MERCURY (II) ION, Nb36
Authors:Hansen, S.B, Andersen, K.R, Laursen, N.S, Andersen, G.R.
Deposit date:2017-04-05
Release date:2017-06-07
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Introducing site-specific cysteines into nanobodies for mercury labelling allows de novo phasing of their crystal structures.
Acta Crystallogr D Struct Biol, 73, 2017
7ZL3
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BU of 7zl3 by Molmil
Signal peptide mimicry primes Sec61 for client-selective inhibition
Descriptor: Cyclic depsipeptide signal peptide mimic, Protein transport protein Sec61 subunit alpha, Protein transport protein Sec61 subunit beta, ...
Authors:Rehan, S, Paavilainen O, V.
Deposit date:2022-04-13
Release date:2023-03-22
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Signal peptide mimicry primes Sec61 for client-selective inhibition.
Nat.Chem.Biol., 19, 2023
5NML
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BU of 5nml by Molmil
Nb36 Ser85Cys with Hg bound
Descriptor: 1,2-ETHANEDIOL, MERCURY (II) ION, Nanobody Nb36 Ser85Cys
Authors:Hansen, S.B, Andersen, K.R, Laursen, N.S, Andersen, G.R.
Deposit date:2017-04-06
Release date:2017-06-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Introducing site-specific cysteines into nanobodies for mercury labelling allows de novo phasing of their crystal structures.
Acta Crystallogr D Struct Biol, 73, 2017
5KW9
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BU of 5kw9 by Molmil
Structural Basis for Norovirus Neutralization by a HBGA Blocking Human IgA Antibody
Descriptor: Capsid protein VP1, IgA Light chain, IgA(VH)-IgG(CH) heavy chain Fab fragment, ...
Authors:Shanker, S, Prasad, B.V.V.
Deposit date:2016-07-15
Release date:2016-10-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for norovirus neutralization by an HBGA blocking human IgA antibody.
Proc.Natl.Acad.Sci.USA, 113, 2016
8Q52
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BU of 8q52 by Molmil
A PBP-like protein built from fragments of different folds
Descriptor: Leucine-specific-binding protein,Chemotaxis protein CheY, SULFATE ION
Authors:Shanmugaratnam, S, Toledo-Patino, S, Goetz, S.K, Farias-Rico, J.A, Hocker, B.
Deposit date:2023-08-08
Release date:2024-04-10
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Molecular handcraft of a well-folded protein chimera.
Febs Lett., 598, 2024
5NLU
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BU of 5nlu by Molmil
Structure of Nb36 crystal form 1
Descriptor: SULFATE ION, single domain llama antibody Nb36
Authors:Hansen, S.B, Andersen, K.R, Laursen, N.S, Andersen, G.R.
Deposit date:2017-04-05
Release date:2017-05-31
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.193 Å)
Cite:Introducing site-specific cysteines into nanobodies for mercury labelling allows de novo phasing of their crystal structures.
Acta Crystallogr D Struct Biol, 73, 2017
5E59
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BU of 5e59 by Molmil
Crystal structure of reduced state of a novel disulfide oxidoreductase from Deinococcus radiodurans
Descriptor: FrnE protein, GLYCEROL
Authors:Bihani, S.C, Panicker, L, Kumar, V.
Deposit date:2015-10-08
Release date:2016-10-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:drFrnE Represents a Hitherto Unknown Class of Eubacterial Cytoplasmic Disulfide Oxido-Reductases.
Antioxid. Redox Signal., 28, 2018
5ZXV
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BU of 5zxv by Molmil
Structural definition of a unique neutralization epitope on the receptor-binding domain of MERS-CoV spike glycoprotein
Descriptor: MERS-CoV RBD, heavy chain, light chain
Authors:Zhang, S, Wang, X.
Deposit date:2018-05-21
Release date:2018-07-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (4.482 Å)
Cite:Structural Definition of a Unique Neutralization Epitope on the Receptor-Binding Domain of MERS-CoV Spike Glycoprotein
Cell Rep, 24, 2018
5AEI
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BU of 5aei by Molmil
Designed Armadillo repeat protein YIIIM5AII in complex with peptide (KR)5
Descriptor: ACETATE ION, CALCIUM ION, DESIGNED ARMADILLO REPEAT PROTEIN YIIIM5AII, ...
Authors:Hansen, S, Tremmel, D, Madhurantakam, C, Reichen, C, Mittl, P, Plueckthun, A.
Deposit date:2015-08-31
Release date:2016-03-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structure and Energetic Contributions of a Designed Modular Peptide-Binding Protein with Picomolar Affinity.
J.Am.Chem.Soc., 138, 2016
3H16
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BU of 3h16 by Molmil
Crystal structure of a bacteria TIR domain, PdTIR from Paracoccus denitrificans
Descriptor: SULFATE ION, TIR protein
Authors:Chan, S.L, Low, L.Y, Santelli, E, Pascual, J.
Deposit date:2009-04-11
Release date:2009-06-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular Mimicry in Innate Immunity: CRYSTAL STRUCTURE OF A BACTERIAL TIR DOMAIN.
J.Biol.Chem., 284, 2009
5IOO
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BU of 5ioo by Molmil
Accommodation of massive sequence variation in Nanoarchaeota by the C-type lectin fold
Descriptor: AvpA, MAGNESIUM ION
Authors:Handa, S, Paul, B, Miller, J, Valentine, D, Ghosh, P.
Deposit date:2016-03-08
Release date:2016-11-09
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (2.521 Å)
Cite:Conservation of the C-type lectin fold for accommodating massive sequence variation in archaeal diversity-generating retroelements.
Bmc Struct.Biol., 16, 2016
3H6P
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BU of 3h6p by Molmil
Crystal structure of Rv3019c-Rv3020c from Mycobacterium tuberculosis
Descriptor: ESAT-6 LIKE PROTEIN ESXS, ESAT-6-like protein esxR, GLYCEROL
Authors:Chan, S, Arbing, M, Phan, T, Kaufmann, M, Cascio, D, Eisenberg, D, TB Structural Genomics Consortium (TBSGC), Integrated Center for Structure and Function Innovation (ISFI)
Deposit date:2009-04-23
Release date:2009-06-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Crystal structure of Rv3019c-Rv3020c from Mycobacterium tuberculosis
To be Published
5BN4
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BU of 5bn4 by Molmil
Structure of a unique ATP synthase NeqA-NeqB in complex with ANP from Nanoarcheaum equitans
Descriptor: MAGNESIUM ION, NEQ263, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Mohanty, S, Jobichen, C, Chichili, V.P.R, Sivaraman, J.
Deposit date:2015-05-25
Release date:2015-09-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.699 Å)
Cite:Structural Basis for a Unique ATP Synthase Core Complex from Nanoarcheaum equitans
J.Biol.Chem., 290, 2015
5BO5
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BU of 5bo5 by Molmil
Structure of a unique ATP synthase subunit NeqB from Nanoarcheaum equitans
Descriptor: MAGNESIUM ION, NEQ263, SULFATE ION
Authors:Mohanty, S, Jobichen, C, Chichili, V.P.R, Sivaraman, J.
Deposit date:2015-05-27
Release date:2015-09-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.808 Å)
Cite:Structural Basis for a Unique ATP Synthase Core Complex from Nanoarcheaum equitans
J.Biol.Chem., 290, 2015
5MA3
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BU of 5ma3 by Molmil
GFP-binding DARPin fusion gc_R11
Descriptor: 1,2-ETHANEDIOL, Green fluorescent protein, R11
Authors:Hansen, S, Stueber, J, Ernst, P, Bojar, D, Batyuk, A, Plueckthun, A.
Deposit date:2016-11-03
Release date:2017-11-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity.
Sci Rep, 7, 2017
5MA5
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BU of 5ma5 by Molmil
GFP-binding DARPin fusion gc_K11
Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, Green fluorescent protein, ...
Authors:Hansen, S, Stueber, J, Ernst, P, Koch, A, Bojar, D, Batyuk, A, Plueckthun, A.
Deposit date:2016-11-03
Release date:2017-11-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity.
Sci Rep, 7, 2017
5MFD
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BU of 5mfd by Molmil
Designed armadillo repeat protein YIIIM''6AII in complex with pD_(KR)5
Descriptor: CALCIUM ION, Capsid decoration protein,pD_(KR)5, YIIIM''6AII
Authors:Hansen, S, Kiefer, J, Madhurantakam, C, Mittl, P, Plueckthun, A.
Deposit date:2016-11-18
Release date:2017-07-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of designed armadillo repeat proteins binding to peptides fused to globular domains.
Protein Sci., 26, 2017
5MFC
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BU of 5mfc by Molmil
Designed armadillo repeat protein YIIIM5AII in complex with (KR)4-GFP
Descriptor: (KR)4-Green fluorescent protein,Green fluorescent protein, ACETATE ION, YIIIM5AII
Authors:Hansen, S, Kiefer, J, Madhurantakam, C, Mittl, P, Plueckthun, A.
Deposit date:2016-11-18
Release date:2017-07-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of designed armadillo repeat proteins binding to peptides fused to globular domains.
Protein Sci., 26, 2017
8K70
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BU of 8k70 by Molmil
Structural basis for the distinct roles of non-conserved Pro116 and conserved Tyr124 of BCH domain of yeast p50RhoGAP
Descriptor: Putative Rho GTPase-activating protein C1565.02c, TETRAETHYLENE GLYCOL
Authors:Shankar, S, Sivaraman, J.
Deposit date:2023-07-26
Release date:2024-05-29
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Structural basis for the distinct roles of non-conserved Pro116 and conserved Tyr124 of BCH domain of yeast p50RhoGAP.
Cell.Mol.Life Sci., 81, 2024
5MFN
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BU of 5mfn by Molmil
Designed armadillo repeat protein YIIIM5AII
Descriptor: CALCIUM ION, D-MALATE, YIIIM5AII
Authors:Hansen, S, Ernst, P, Reichen, C, Ewald, C, Mittl, P, Plueckthun, A.
Deposit date:2016-11-18
Release date:2017-09-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Curvature of designed armadillo repeat proteins allows modular peptide binding.
J. Struct. Biol., 201, 2018

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