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PDB: 687 results

6WNF
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BU of 6wnf by Molmil
The Crystal Structure of Apo Domain-Swapped Dimer Q108K:K40D:T53A:R58L:Q38F:Q4F:F57H Variant of HCRBPII
Descriptor: ACETATE ION, GLYCEROL, Retinol-binding protein 2
Authors:Ghanbarpour, A, Geiger, J.
Deposit date:2020-04-22
Release date:2020-08-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Human Cellular Retinol Binding Protein II Forms a Domain-Swapped Trimer Representing a Novel Fold and a New Template for Protein Engineering.
Chembiochem, 21, 2020
8S1X
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BU of 8s1x by Molmil
Crystal structure of Actinonin-bound PDF1 and the computationally designed DBAct553_1 protein binder
Descriptor: ACTINONIN, DBAct553_1, FORMIC ACID, ...
Authors:Marchand, A, Pacesa, M, Correia, B.E.
Deposit date:2024-02-16
Release date:2024-10-30
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Targeting hybrid neosurface fingerprints for the design of de novo drug-induced protein interactions
To Be Published
7BBL
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BU of 7bbl by Molmil
Structure of human Gemin6/Gemin7/Gemin8 trimeric complex
Descriptor: Gem-associated protein 6, Gem-associated protein 7, Gem-associated protein 8
Authors:Viswanathan, A, Grimm, C, Fischer, U.
Deposit date:2020-12-17
Release date:2021-01-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.521 Å)
Cite:Identification and structural analysis of the Schizosaccharomyces pombe SMN complex.
Nucleic Acids Res., 49, 2021
8HSI
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BU of 8hsi by Molmil
Cryo-EM structure of human TMEM87A, PE-bound
Descriptor: (1S)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(octadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
Authors:Han, A, Kim, H.M.
Deposit date:2022-12-19
Release date:2023-12-27
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:GolpHCat (TMEM87A), a unique voltage-dependent cation channel in Golgi apparatus, contributes to Golgi-pH maintenance and hippocampus-dependent memory.
Nat Commun, 15, 2024
8HTT
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BU of 8htt by Molmil
Cryo-EM structure of human TMEM87A, gluconate-bound
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, D-gluconic acid, Transmembrane protein 87A,EGFP, ...
Authors:Han, A, Kim, H.M.
Deposit date:2022-12-21
Release date:2023-12-27
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:GolpHCat (TMEM87A), a unique voltage-dependent cation channel in Golgi apparatus, contributes to Golgi-pH maintenance and hippocampus-dependent memory.
Nat Commun, 15, 2024
8KB4
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BU of 8kb4 by Molmil
Cryo-EM structure of human TMEM87A A308M
Descriptor: (9R,12R)-15-amino-12-hydroxy-6,12-dioxo-7,11,13-trioxa-12lambda~5~-phosphapentadecan-9-yl undecanoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, Transmembrane protein 87A,EGFP
Authors:Han, A, Kim, H.M.
Deposit date:2023-08-03
Release date:2024-07-10
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:GolpHCat (TMEM87A), a unique voltage-dependent cation channel in Golgi apparatus, contributes to Golgi-pH maintenance and hippocampus-dependent memory.
Nat Commun, 15, 2024
6DCM
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BU of 6dcm by Molmil
The atomic resolution crystal structure of Kringle 2 variant bound with EACA
Descriptor: 6-AMINOHEXANOIC ACID, Plasminogen
Authors:Ghanbarpour, A, Geiger, J.
Deposit date:2018-05-07
Release date:2019-05-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.031 Å)
Cite:The atomic resolution crystal structure of Kringle 2 variant bound with EACA
To Be Published
5EY0
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BU of 5ey0 by Molmil
Crystal structure of CodY from Staphylococcus aureus with GTP and Ile
Descriptor: GTP-sensing transcriptional pleiotropic repressor CodY, GUANOSINE-5'-TRIPHOSPHATE, ISOLEUCINE
Authors:Han, A, Hwang, K.Y.
Deposit date:2015-11-24
Release date:2016-09-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The structure of the pleiotropic transcription regulator CodY provides insight into its GTP-sensing mechanism
Nucleic Acids Res., 44, 2016
5EY2
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BU of 5ey2 by Molmil
Crystal structure of CodY from Bacillus cereus
Descriptor: GTP-sensing transcriptional pleiotropic repressor CodY
Authors:Han, A, Lee, W.C, Son, J, Kim, S.H, Hwang, K.Y.
Deposit date:2015-11-24
Release date:2016-09-14
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structure of the pleiotropic transcription regulator CodY provides insight into its GTP-sensing mechanism
Nucleic Acids Res., 44, 2016
5EY1
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BU of 5ey1 by Molmil
Crystal structure of CodY from Staphylococcus aureus with GTP and Ile
Descriptor: GTP-sensing transcriptional pleiotropic repressor CodY, GUANOSINE-5'-TRIPHOSPHATE, ISOLEUCINE
Authors:Han, A, Hwang, K.Y.
Deposit date:2015-11-24
Release date:2016-09-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structure of the pleiotropic transcription regulator CodY provides insight into its GTP-sensing mechanism
Nucleic Acids Res., 44, 2016
5FA9
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BU of 5fa9 by Molmil
Bifunctional Methionine Sulfoxide Reductase AB (MsrAB) from Treponema denticola
Descriptor: (4S,5S)-1,2-DITHIANE-4,5-DIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Peptide methionine sulfoxide reductase MsrA
Authors:Han, A, Son, J, Kim, H.-Y, Hwang, K.Y.
Deposit date:2015-12-11
Release date:2016-09-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Essential Role of the Linker Region in the Higher Catalytic Efficiency of a Bifunctional MsrA-MsrB Fusion Protein
Biochemistry, 55, 2016
1N6J
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BU of 1n6j by Molmil
Structural basis of sequence-specific recruitment of histone deacetylases by Myocyte Enhancer Factor-2
Descriptor: 5'-D(*AP*GP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*GP*C)-3', 5'-D(*GP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*CP*T)-3', Calcineurin-binding protein Cabin 1, ...
Authors:Han, A, Pan, F, Stroud, J.C, Youn, H.D, Liu, J.O, Chen, L.
Deposit date:2002-11-11
Release date:2003-11-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Sequence-specific recruitment of transcriptional co-repressor Cabin1 by myocyte enhancer factor-2
Nature, 422, 2003
3LST
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BU of 3lst by Molmil
Crystal Structure of CalO1, Methyltransferase in Calicheamicin Biosynthesis, SAH bound form
Descriptor: 1,2-ETHANEDIOL, CalO1 Methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Chang, A, Singh, S, Bingman, C.A, Thorson, J.S, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2010-02-12
Release date:2010-03-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural characterization of CalO1: a putative orsellinic acid methyltransferase in the calicheamicin-biosynthetic pathway.
Acta Crystallogr.,Sect.D, 67, 2011
3OTI
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BU of 3oti by Molmil
Crystal Structure of CalG3, Calicheamicin Glycostyltransferase, TDP and calicheamicin T0 bound form
Descriptor: CHLORIDE ION, CalG3, Calicheamicin T0, ...
Authors:Chang, A, Singh, S, Bingman, C.A, Thorson, J.S, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2010-09-11
Release date:2010-12-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.597 Å)
Cite:Complete set of glycosyltransferase structures in the calicheamicin biosynthetic pathway reveals the origin of regiospecificity.
Proc.Natl.Acad.Sci.USA, 108, 2011
3OTH
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BU of 3oth by Molmil
Crystal Structure of CalG1, Calicheamicin Glycostyltransferase, TDP and calicheamicin alpha3I bound form
Descriptor: CalG1, Calicheamicin alpha3I, THYMIDINE-5'-DIPHOSPHATE
Authors:Chang, A, Singh, S, Bingman, C.A, Thorson, J.S, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2010-09-11
Release date:2010-12-15
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Complete set of glycosyltransferase structures in the calicheamicin biosynthetic pathway reveals the origin of regiospecificity.
Proc.Natl.Acad.Sci.USA, 108, 2011
3OTG
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BU of 3otg by Molmil
Crystal Structure of CalG1, Calicheamicin Glycostyltransferase, TDP bound form
Descriptor: CHLORIDE ION, CalG1, THYMIDINE-5'-DIPHOSPHATE
Authors:Chang, A, Singh, S, Bingman, C.A, Thorson, J.S, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2010-09-11
Release date:2010-12-15
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Complete set of glycosyltransferase structures in the calicheamicin biosynthetic pathway reveals the origin of regiospecificity.
Proc.Natl.Acad.Sci.USA, 108, 2011
3PKP
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BU of 3pkp by Molmil
Q83S Variant of S. Enterica RmlA with dATP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Glucose-1-phosphate thymidylyltransferase, MAGNESIUM ION
Authors:Chang, A, Moretti, R, Bingman, C.A, Thorson, J.S, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2010-11-11
Release date:2011-01-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Expanding the Nucleotide and Sugar 1-Phosphate Promiscuity of Nucleotidyltransferase RmlA via Directed Evolution.
J.Biol.Chem., 286, 2011
3PKQ
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BU of 3pkq by Molmil
Q83D Variant of S. Enterica RmlA with dGTP
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DI(HYDROXYETHYL)ETHER, Glucose-1-phosphate thymidylyltransferase, ...
Authors:Chang, A, Moretti, R, Bingman, C.A, Thorson, J.S, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2010-11-11
Release date:2011-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Expanding the Nucleotide and Sugar 1-Phosphate Promiscuity of Nucleotidyltransferase RmlA via Directed Evolution.
J.Biol.Chem., 286, 2011
7L73
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BU of 7l73 by Molmil
Crystal structure of the first bromodomain (BD1) of human BRDT bound to ERK5-IN-1
Descriptor: 11-cyclopentyl-2-({2-ethoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one, Bromodomain testis-specific protein
Authors:Chan, A, Karim, M.R, Schonbrunn, E.
Deposit date:2020-12-25
Release date:2021-06-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors.
J.Med.Chem., 64, 2021
7LEJ
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BU of 7lej by Molmil
Crystal structure of the second bromodomain (BD2) of human BRDT bound to Volasertib
Descriptor: Bromodomain testis-specific protein, N-{trans-4-[4-(cyclopropylmethyl)piperazin-1-yl]cyclohexyl}-4-{[(7R)-7-ethyl-5-methyl-8-(1-methylethyl)-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxybenzamide
Authors:Chan, A, Karim, M.R, Schonbrunn, E.
Deposit date:2021-01-14
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors.
J.Med.Chem., 64, 2021
7LEK
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BU of 7lek by Molmil
Crystal structure of the second bromodomain (BD2) of human BRDT bound to ERK5-IN-1
Descriptor: 1,2-ETHANEDIOL, 11-cyclopentyl-2-({2-ethoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one, Bromodomain testis-specific protein, ...
Authors:Chan, A, Karim, M.R, Schonbrunn, E.
Deposit date:2021-01-14
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors.
J.Med.Chem., 64, 2021
7LEL
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BU of 7lel by Molmil
Crystal structure of the second bromodomain (BD2) of human BRDT bound to Bromosporine
Descriptor: Bromodomain testis-specific protein, Bromosporine
Authors:Chan, A, Karim, M.R, Schonbrunn, E.
Deposit date:2021-01-14
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors.
J.Med.Chem., 64, 2021
7LEM
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BU of 7lem by Molmil
Crystal structure of the first bromodomain (BD1) of human BRDT bound to LRRK2-IN-1
Descriptor: 1,2-ETHANEDIOL, 2-[(2-methoxy-4-{[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl}phenyl)amino]-5,11-dimethyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one, Bromodomain testis-specific protein
Authors:Chan, A, Karim, M.R, Schonbrunn, E.
Deposit date:2021-01-14
Release date:2021-07-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors.
J.Med.Chem., 64, 2021
7LRK
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BU of 7lrk by Molmil
Crystal structure of BPTF bromodomain in complex with inhibitor Pdy-3-093
Descriptor: 1,2-ETHANEDIOL, 4-chloranyl-2-methyl-5-[[(3~{S})-pyrrolidin-3-yl]amino]pyridazin-3-one, Nucleosome-remodeling factor subunit BPTF
Authors:Chan, A, Schonbrunn, E.
Deposit date:2021-02-16
Release date:2022-08-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:New Design Rules for Developing Potent Cell-Active Inhibitors of the Nucleosome Remodeling Factor (NURF) via BPTF Bromodomain Inhibition.
J.Med.Chem., 64, 2021
7LP0
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BU of 7lp0 by Molmil
Crystal structure of BPTF bromodomain in complex with inhibitor Pdy-3-077
Descriptor: 1,2-ETHANEDIOL, 4-chlorol-2-methyl-5-[[(3~{R})-1-methylpiperidin-3-yl]amino]pyridazin-3-one, DIMETHYL SULFOXIDE, ...
Authors:Chan, A, Schonbrunn, E.
Deposit date:2021-02-11
Release date:2022-08-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:New Design Rules for Developing Potent Cell-Active Inhibitors of the Nucleosome Remodeling Factor (NURF) via BPTF Bromodomain Inhibition.
J.Med.Chem., 64, 2021

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