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PDB: 99 件
5EJL
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MrkH, A novel c-di-GMP dependence transcription regulatory factor.
分子名称: 1,2-ETHANEDIOL, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Klebsiella pneumoniae genome assembly NOVST, ...
著者Wang, F, Zhu, D, Gu, L.
登録日2015-11-02
公開日2016-10-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The PilZ domain of MrkH represents a novel DNA binding motif
Protein Cell, 7, 2016
5HHA
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BU of 5hha by Molmil
Structure of PvdO from Pseudomonas aeruginosa
分子名称: CALCIUM ION, PvdO
著者Bai, G, Yuan, Z, Shang, G, Xia, H, Gu, L.
登録日2016-01-10
公開日2017-01-18
最終更新日2017-01-25
実験手法X-RAY DIFFRACTION (1.24 Å)
主引用文献Crystal structure of Chromophore maturation protein from Pseudomonas aeruginosa
To Be Published
5XSP
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BU of 5xsp by Molmil
The catalytic domain of GdpP with 5'-pApA
分子名称: ADENOSINE MONOPHOSPHATE, MANGANESE (II) ION, Phosphodiesterase acting on cyclic dinucleotides
著者Wang, F, Gu, L.
登録日2017-06-15
公開日2018-01-31
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.146 Å)
主引用文献Structural and biochemical characterization of the catalytic domains of GdpP reveals a unified hydrolysis mechanism for the DHH/DHHA1 phosphodiesterase
Biochem. J., 475, 2018
5XBT
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BU of 5xbt by Molmil
The structure of BrlR bound to c-di-GMP
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Wang, F, Qing, H, Gu, L.
登録日2017-03-21
公開日2018-05-02
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.495 Å)
主引用文献BrlR from Pseudomonas aeruginosa is a receptor for both cyclic di-GMP and pyocyanin.
Nat Commun, 9, 2018
3TEF
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BU of 3tef by Molmil
Crystal Structure of the Periplasmic Catecholate-Siderophore Binding Protein VctP from Vibrio Cholerae
分子名称: Iron(III) ABC transporter, periplasmic iron-compound-binding protein
著者Liu, X, Wang, Z, Liu, S, Li, N, Chen, Y, Zhu, C, Zhu, D, Wei, T, Huang, Y, Xu, S, Gu, L.
登録日2011-08-13
公開日2012-08-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.698 Å)
主引用文献Crystal structure of periplasmic catecholate-siderophore binding protein VctP from Vibrio cholerae at 1.7 A resolution
Febs Lett., 586, 2012
3R5S
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BU of 3r5s by Molmil
Crystal structure of apo-ViuP
分子名称: Ferric vibriobactin ABC transporter, periplasmic ferric vibriobactin-binding protein
著者Li, N, Zhang, C, Li, B, Liu, X, Huang, Y, Xu, S, Gu, L.
登録日2011-03-19
公開日2012-02-08
最終更新日2012-05-30
実験手法X-RAY DIFFRACTION (1.791 Å)
主引用文献Unique iron coordination in iron-chelating molecule vibriobactin helps Vibrio cholerae evade mammalian siderocalin-mediated immune response.
J.Biol.Chem., 287, 2012
3TKL
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BU of 3tkl by Molmil
Crystal structure of the GTP-bound Rab1a in complex with the coiled-coil domain of LidA from Legionella pneumophila
分子名称: GUANOSINE-5'-TRIPHOSPHATE, LidA protein, substrate of the Dot/Icm system, ...
著者Cheng, W, Yin, K, Lu, D, Li, B, Zhu, D, Chen, Y, Zhang, H, Xu, S, Chai, J, Gu, L.
登録日2011-08-27
公開日2012-06-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.183 Å)
主引用文献Structural insights into a unique Legionella pneumophila effector LidA recognizing both GDP and GTP bound Rab1 in their active state
Plos Pathog., 8, 2012
3R5T
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Crystal structure of holo-ViuP
分子名称: (4S,5R)-N-{3-[(2,3-dihydroxybenzoyl)amino]propyl}-2-(2,3-dihydroxyphenyl)-N-[3-({[(4S,5R)-2-(2,3-dihydroxyphenyl)-5-met hyl-4,5-dihydro-1,3-oxazol-4-yl]carbonyl}amino)propyl]-5-methyl-4,5-dihydro-1,3-oxazole-4-carboxamide, 1,2-ETHANEDIOL, ACETIC ACID, ...
著者Li, N, Zhang, C, Li, B, Liu, X, Huang, Y, Xu, S, Gu, L.
登録日2011-03-19
公開日2012-02-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Unique iron coordination in iron-chelating molecule vibriobactin helps Vibrio cholerae evade mammalian siderocalin-mediated immune response.
J.Biol.Chem., 287, 2012
3TB4
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BU of 3tb4 by Molmil
Crystal structure of the ISC domain of VibB
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Liu, S, Zhang, C, Niu, B, Li, N, Liu, M, Wei, T, Zhu, D, Xu, S, Gu, L.
登録日2011-08-05
公開日2012-08-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Structural insight into the ISC domain of VibB from Vibrio cholerae at atomic resolution: a snapshot just before the enzymatic reaction
Acta Crystallogr.,Sect.D, 68, 2012
3TG2
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BU of 3tg2 by Molmil
Crystal structure of the ISC domain of VibB in complex with isochorismate
分子名称: (5S,6S)-5-[(1-carboxyethenyl)oxy]-6-hydroxycyclohexa-1,3-diene-1-carboxylic acid, TRIETHYLENE GLYCOL, Vibriobactin-specific isochorismatase
著者Liu, S, Zhang, C, Niu, B, Li, N, Liu, X, Liu, M, Wei, T, Zhu, D, Huang, Y, Xu, S, Gu, L.
登録日2011-08-17
公開日2012-08-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.101 Å)
主引用文献Structural insight into the ISC domain of VibB from Vibrio cholerae at atomic resolution: a snapshot just before the enzymatic reaction
Acta Crystallogr.,Sect.D, 68, 2012
3SFV
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BU of 3sfv by Molmil
Crystal structure of the GDP-bound Rab1a S25N mutant in complex with the coiled-coil domain of LidA from Legionella pneumophila
分子名称: GUANOSINE-5'-DIPHOSPHATE, LidA protein, substrate of the Dot/Icm system, ...
著者Yin, K, Lu, D, Zhu, D, Zhang, H, Li, B, Xu, S, Gu, L.
登録日2011-06-14
公開日2012-04-18
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Structural Insights into a Unique Legionella pneumophila Effector LidA Recognizing Both GDP and GTP Bound Rab1 in Their Active State
Plos Pathog., 8, 2012
4LAF
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BU of 4laf by Molmil
Crystal structure of PnpB complex with FMN
分子名称: FLAVIN MONONUCLEOTIDE, NAD(P)H dehydrogenase (quinone)
著者Su, J, Zhang, C, Li, N, Gu, L.
登録日2013-06-19
公開日2014-06-25
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.761 Å)
主引用文献Crystal structure of PnpB complex with FMN
To be Published
4LA4
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BU of 4la4 by Molmil
Crystal structure of native PnpB
分子名称: NAD(P)H dehydrogenase (quinone)
著者Su, J, Zhang, C, Li, N, Gu, L.
登録日2013-06-19
公開日2014-06-25
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Crystal structure of native PnpB
To be Published
2HKA
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BU of 2hka by Molmil
Crystal structure of bovine NPC2 and cholesterol sulfate complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, CHOLEST-5-EN-3-YL HYDROGEN SULFATE, ...
著者Xu, S, Gu, L, Benoff, B, Stock, A.M.
登録日2006-07-03
公開日2007-06-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Structural Basis of Sterol Binding by NPC2, a Lysosomal Protein Deficient in Niemann-Pick Type C2 Disease
J.Biol.Chem., 282, 2007
5XT3
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BU of 5xt3 by Molmil
The catalytic domain of GdpP with c-di-GMP
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), MANGANESE (II) ION, Phosphodiesterase acting on cyclic dinucleotides
著者Wang, F, Gu, L.
登録日2017-06-16
公開日2018-01-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.591 Å)
主引用文献Structural and biochemical characterization of the catalytic domains of GdpP reveals a unified hydrolysis mechanism for the DHH/DHHA1 phosphodiesterase
Biochem. J., 475, 2018
5XSI
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BU of 5xsi by Molmil
The catalytic domain of GdpP
分子名称: MANGANESE (II) ION, Phosphodiesterase acting on cyclic dinucleotides
著者Wang, F, Gu, L.
登録日2017-06-14
公開日2018-01-31
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural and biochemical characterization of the catalytic domains of GdpP reveals a unified hydrolysis mechanism for the DHH/DHHA1 phosphodiesterase
Biochem. J., 475, 2018
5XSN
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BU of 5xsn by Molmil
The catalytic domain of GdpP with c-di-AMP
分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, MANGANESE (II) ION, Phosphodiesterase acting on cyclic dinucleotides
著者Wang, F, Gu, L.
登録日2017-06-14
公開日2018-01-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献Structural and biochemical characterization of the catalytic domains of GdpP reveals a unified hydrolysis mechanism for the DHH/DHHA1 phosphodiesterase
Biochem. J., 475, 2018
5XLY
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BU of 5xly by Molmil
Crystal structure of CheR1 in complex with c-di-GMP-bound MapZ
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Chemotaxis protein methyltransferase 1, Cyclic diguanosine monophosphate-binding protein PA4608
著者Yuan, Z, Zhu, Y, Gu, L.
登録日2017-05-12
公開日2017-08-23
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.763 Å)
主引用文献Structural basis for the regulation of chemotaxis by MapZ in the presence of c-di-GMP
Acta Crystallogr D Struct Biol, 73, 2017
5XBW
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BU of 5xbw by Molmil
The structure of BrlR
分子名称: Probable transcriptional regulator
著者Wang, F, Qing, H, Gu, L.
登録日2017-03-21
公開日2018-05-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.109 Å)
主引用文献BrlR from Pseudomonas aeruginosa is a receptor for both cyclic di-GMP and pyocyanin.
Nat Commun, 9, 2018
5XBI
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BU of 5xbi by Molmil
The structure of BrlR-C domain bound to 3-amino-2-phenazino(a pyocyanin analog)
分子名称: 3-azanylphenazin-2-ol, DI(HYDROXYETHYL)ETHER, Probable transcriptional regulator
著者Wang, F, Qing, H, Gu, L.
登録日2017-03-17
公開日2018-03-21
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献BrlR from Pseudomonas aeruginosa is a receptor for both cyclic di-GMP and pyocyanin.
Nat Commun, 9, 2018
5GZ2
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BU of 5gz2 by Molmil
luciferase complex with 7-cy-L
分子名称: (4S)-2-[6-(azepan-1-yl)-1,3-benzothiazol-2-yl]-4,5-dihydro-1,3-thiazole-4-carboxylic acid, Luciferin 4-monooxygenase
著者Su, J, Wang, F, Gu, L.
登録日2016-09-26
公開日2017-09-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献luciferase complex with 7-cy-L
To Be Published
8J6W
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BU of 8j6w by Molmil
Full length crystal structure of Escherichia coli Fur
分子名称: Ferric uptake regulation protein, ZINC ION
著者Zhang, F, Wang, X, Gu, L.
登録日2023-04-26
公開日2024-05-01
実験手法X-RAY DIFFRACTION (2.66 Å)
主引用文献Full length crystal structure of Escherichia coli Fur
To Be Published
2FP3
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BU of 2fp3 by Molmil
Crystal structure of the Drosophila initiator caspase Dronc
分子名称: Caspase Nc
著者Yan, N, Gu, L, Shi, Y.
登録日2006-01-15
公開日2006-01-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure and activation mechanism of the Drosophila initiator caspase dronc
J.Biol.Chem., 281, 2006
5ZR4
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Manganese-dependent transcriptional repressor
分子名称: Metal-dependent transcriptional regulator
著者Cong, X.Y, Gu, L.C, Wang, J.B.
登録日2018-04-23
公開日2019-01-23
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Crystal structures of manganese-dependent transcriptional repressor MntR (Rv2788) from Mycobacterium tuberculosis in apo and manganese bound forms.
Biochem. Biophys. Res. Commun., 501, 2018
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