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PDB: 164 results

15C8
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BU of 15c8 by Molmil
CATALYTIC ANTIBODY 5C8, FREE FAB
Descriptor: IGG 5C8 FAB (HEAVY CHAIN), IGG 5C8 FAB (LIGHT CHAIN)
Authors:Gruber, K, Wilson, I.A.
Deposit date:1998-03-18
Release date:1999-03-23
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Ligand-Induced Conformational Changes in a Catalytic Antibody: Comparison of the Bound and Unbound Structure of Fab 5C8
To be Published
1YB6
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BU of 1yb6 by Molmil
Hydroxynitrile lyase from hevea brasiliensis in complex with mandelonitrile
Descriptor: (S)-MANDELIC ACID NITRILE, (S)-acetone-cyanohydrin lyase, SULFATE ION
Authors:Gruber, K, Gartler, G, Kratky, C.
Deposit date:2004-12-20
Release date:2005-12-20
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structural determinants of the enantioselectivity of the hydroxynitrile lyase from Hevea brasiliensis
J.Biotechnol., 129, 2007
1YB7
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BU of 1yb7 by Molmil
Hydroxynitrile lyase from hevea brasiliensis in complex with 2,3-dimethyl-2-hydroxy-butyronitrile
Descriptor: (S)-2-HYDROXY-2,3-DIMETHYLBUTANENITRILE, (S)-acetone-cyanohydrin lyase, SULFATE ION
Authors:Gruber, K, Gartler, G, Kratky, C.
Deposit date:2004-12-20
Release date:2005-12-20
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Structural determinants of the enantioselectivity of the hydroxynitrile lyase from Hevea brasiliensis
J.Biotechnol., 129, 2007
1SCI
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BU of 1sci by Molmil
K236L mutant of hydroxynitrile lyase from Hevea brasiliensis
Descriptor: (S)-acetone-cyanohydrin lyase, SULFATE ION
Authors:Gruber, K, Gartler, G, Krammer, B, Schwab, H, Kratky, C.
Deposit date:2004-02-12
Release date:2004-06-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Reaction mechanism of hydroxynitrile lyases of the alpha/beta-hydrolase superfamily: the three-dimensional structure of the transient enzyme-substrate complex certifies the crucial role of LYS236
J.Biol.Chem., 279, 2004
1SCK
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BU of 1sck by Molmil
K236L mutant of hydroxynitrile lyase from Hevea brasiliensis in complex with acetone
Descriptor: (S)-acetone-cyanohydrin lyase, ACETONE, SULFATE ION
Authors:Gruber, K, Gartler, G, Krammer, B, Schwab, H, Kratky, C.
Deposit date:2004-02-12
Release date:2004-06-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Reaction mechanism of hydroxynitrile lyases of the alpha/beta-hydrolase superfamily: the three-dimensional structure of the transient enzyme-substrate complex certifies the crucial role of LYS236
J.Biol.Chem., 279, 2004
1SCQ
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BU of 1scq by Molmil
K236L mutant of hydroxynitrile lyase from Hevea brasiliensis in complex with acetonecyanohydrin
Descriptor: (S)-acetone-cyanohydrin lyase, 2-HYDROXY-2-METHYLPROPANENITRILE, SULFATE ION
Authors:Gruber, K, Gartler, G, Krammer, B, Schwab, H, Kratky, C.
Deposit date:2004-02-12
Release date:2004-06-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Reaction mechanism of hydroxynitrile lyases of the alpha/beta-hydrolase superfamily: the three-dimensional structure of the transient enzyme-substrate complex certifies the crucial role of LYS236
J.Biol.Chem., 279, 2004
1SC9
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BU of 1sc9 by Molmil
Hydroxynitrile Lyase from Hevea brasiliensis in complex with the natural substrate acetone cyanohydrin
Descriptor: (S)-acetone-cyanohydrin lyase, 2-HYDROXY-2-METHYLPROPANENITRILE, SULFATE ION
Authors:Gruber, K, Gartler, G, Krammer, B, Schwab, H, Kratky, C.
Deposit date:2004-02-12
Release date:2004-06-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Reaction mechanism of hydroxynitrile lyases of the alpha/beta-hydrolase superfamily: the three-dimensional structure of the transient enzyme-substrate complex certifies the crucial role of LYS236
J.Biol.Chem., 279, 2004
1I9C
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BU of 1i9c by Molmil
GLUTAMATE MUTASE FROM CLOSTRIDIUM COCHLEARIUM: COMPLEX WITH ADENOSYLCOBALAMIN AND SUBSTRATE
Descriptor: (2S,3S)-3-methyl-aspartic acid, 5'-DEOXYADENOSINE, COBALAMIN, ...
Authors:Gruber, K, Kratky, C.
Deposit date:2001-03-19
Release date:2002-03-19
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Radical Shuttling in a Protein: Ribose Pseudorotation Controls Alkyl-Radical Transfer in the Coenzyme B(12) Dependent Enzyme Glutamate Mutase
Angew.Chem.Int.Ed.Engl., 40, 2001
1CB7
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BU of 1cb7 by Molmil
GLUTAMATE MUTASE FROM CLOSTRIDIUM COCHLEARIUM RECONSTITUTED WITH METHYL-COBALAMIN
Descriptor: CO-METHYLCOBALAMIN, D(-)-TARTARIC ACID, PROTEIN (GLUTAMATE MUTASE)
Authors:Gruber, K, Reitzer, R, Kratky, C.
Deposit date:1999-03-03
Release date:2000-02-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Glutamate mutase from Clostridium cochlearium: the structure of a coenzyme B12-dependent enzyme provides new mechanistic insights.
Structure Fold.Des., 7, 1999
6FY4
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BU of 6fy4 by Molmil
Structure of human NAD(P) H:quinone oxidoreductase in complex with N-(2-bromophenyl)pyrrolidine-1-sulfonamide
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, N-(2-bromophenyl)pyrrolidine-1-sulfonamide, NAD(P)H dehydrogenase [quinone] 1
Authors:Gruber, K, Hromic, A.
Deposit date:2018-03-10
Release date:2019-03-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:A small molecule chaperone rescues the stability and activity of a cancer-associated variant of NAD(P)H:quinone oxidoreductase 1 in vitro.
Febs Lett., 594, 2020
35C8
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BU of 35c8 by Molmil
CATALYTIC ANTIBODY 5C8, FAB-INHIBITOR COMPLEX
Descriptor: IGG 5C8, N-(PARA-GLUTARAMIDOPHENYL-ETHYL)-PIPERIDINIUM-N-OXIDE
Authors:Gruber, K, Wilson, I.A.
Deposit date:1998-03-18
Release date:1999-03-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for antibody catalysis of a disfavored ring closure reaction.
Biochemistry, 38, 1999
25C8
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BU of 25c8 by Molmil
CATALYTIC ANTIBODY 5C8, FAB-HAPTEN COMPLEX
Descriptor: IGG 5C8, N-METHYL-N-(PARA-GLUTARAMIDOPHENYL-ETHYL)-PIPERIDINIUM ION
Authors:Gruber, K, Wilson, I.A.
Deposit date:1998-03-18
Release date:1999-03-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for antibody catalysis of a disfavored ring closure reaction.
Biochemistry, 38, 1999
6H9F
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BU of 6h9f by Molmil
Structure of glutamate mutase reconstituted with bishomo-coenzyme B12
Descriptor: (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-propyl-oxolane-3,4-diol, COBALAMIN, D(-)-TARTARIC ACID, ...
Authors:Gruber, K, Csitkovits, V, Kratky, C.
Deposit date:2018-08-03
Release date:2019-08-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-Based Demystification of Radical Catalysis by a Coenzyme B 12 Dependent Enzyme-Crystallographic Study of Glutamate Mutase with Cofactor Homologues.
Angew.Chem.Int.Ed.Engl., 61, 2022
6H9E
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BU of 6h9e by Molmil
Structure of glutamate mutase reconstituted with homo-coenzyme B12
Descriptor: (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-ethyl-oxolane-3,4-diol, COBALAMIN, D(-)-TARTARIC ACID, ...
Authors:Gruber, K, Csitkovits, V, Kratky, C.
Deposit date:2018-08-03
Release date:2019-08-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structure-Based Demystification of Radical Catalysis by a Coenzyme B 12 Dependent Enzyme-Crystallographic Study of Glutamate Mutase with Cofactor Homologues.
Angew.Chem.Int.Ed.Engl., 61, 2022
1YNA
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BU of 1yna by Molmil
ENDO-1,4-BETA-XYLANASE, ROOM TEMPERATURE, PH 4.0
Descriptor: ENDO-1,4-BETA-XYLANASE
Authors:Gruber, K, Kratky, C.
Deposit date:1996-08-22
Release date:1997-02-12
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Thermophilic xylanase from Thermomyces lanuginosus: high-resolution X-ray structure and modeling studies.
Biochemistry, 37, 1998
2YAS
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BU of 2yas by Molmil
HYDROXYNITRILE LYASE FROM HEVEA BRASILIENSIS COMPLEXED WITH RHODANIDE
Descriptor: PROTEIN (HYDROXYNITRILE LYASE), SULFATE ION, THIOCYANATE ION
Authors:Gruber, K, Gugganig, M, Kratky, C.
Deposit date:1999-03-11
Release date:1999-10-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Three-dimensional structures of enzyme-substrate complexes of the hydroxynitrile lyase from Hevea brasiliensis.
Protein Sci., 8, 1999
4V3B
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BU of 4v3b by Molmil
The structure of alpha2,3-sialyltransferase variant 1 from Pasteurella dagmatis in complex with the donor product CMP
Descriptor: CYTIDINE-5'-MONOPHOSPHATE, SIALYLTRANSFERASE
Authors:Pavkov-Keller, T, Schmoelzer, K, Czabany, T, Luley-Goedl, C, Ribitsch, D, Schwab, H, Nidetzky, B, Gruber, K.
Deposit date:2014-10-17
Release date:2015-04-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Complete Switch from Alpha2,3- to Alpha2,6-Regioselectivity in Pasteurella Dagmatis Beta-D-Galactoside Sialyltransferase by Active-Site Redesign
Chem.Commun.(Camb.), 51, 2015
8OIM
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BU of 8oim by Molmil
Crystal structure of the lipase SpL from Sphingomonas sp. HXN-200
Descriptor: Lipase
Authors:Mokos, D, Gruber, K, Daniel, B.
Deposit date:2023-03-23
Release date:2024-04-03
Method:X-RAY DIFFRACTION (1.994 Å)
Cite:Amide formation of (hetero)aromatic esters and primary amines in buffer catalyzed by serine hydrolases: An Asp next to Ser of the catalytic triad of serine hydrolases is crucial for activity
To Be Published
4UXA
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BU of 4uxa by Molmil
Improved variant of (R)-selective manganese-dependent hydroxynitrile lyase from bacteria
Descriptor: CUPIN 2 CONSERVED BARREL DOMAIN PROTEIN, MANGANESE (II) ION
Authors:Pavkov-Keller, T, Wiedner, R, Kothbauer, B, Gruber-Khadjawi, M, Schwab, H, Steiner, K, Gruber, K.
Deposit date:2014-08-21
Release date:2015-01-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Improving the Properties of Bacterial R-Selective Hydroxynitrile Lyases for Industrial Applications
Chemcatchem, 2015
4FQF
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BU of 4fqf by Molmil
Crystal structure of a thionitrate intermediate of human aldehyde dehydrogenase-2
Descriptor: Aldehyde dehydrogenase, mitochondrial, MAGNESIUM ION, ...
Authors:Lang, B.S, Gruber, K.
Deposit date:2012-06-25
Release date:2012-09-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.281 Å)
Cite:Vascular Bioactivation of Nitroglycerin by Aldehyde Dehydrogenase-2: REACTION INTERMEDIATES REVEALED BY CRYSTALLOGRAPHY AND MASS SPECTROMETRY.
J.Biol.Chem., 287, 2012
4FR8
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BU of 4fr8 by Molmil
Crystal structure of human aldehyde dehydrogenase-2 in complex with nitroglycerin
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-DIPHOSPHATE, Aldehyde dehydrogenase, ...
Authors:Lang, B.S, Gruber, K.
Deposit date:2012-06-26
Release date:2012-09-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Vascular Bioactivation of Nitroglycerin by Aldehyde Dehydrogenase-2: REACTION INTERMEDIATES REVEALED BY CRYSTALLOGRAPHY AND MASS SPECTROMETRY.
J.Biol.Chem., 287, 2012
8C66
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BU of 8c66 by Molmil
Structure of the Reconstructed Ancestor of Phenolic Acid Decarboxylase AncPAD55
Descriptor: Phenolic acid decarboxylase N55, SULFATE ION
Authors:Schruefer, A, Mokos, D, Gruber, K, Daniel, B.
Deposit date:2023-01-11
Release date:2023-07-19
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Reconstructed ancestral sequence of bacterial phenolic acid decarboxylase show increased thermostability
To Be Published
4FQD
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BU of 4fqd by Molmil
Crystal structure of the enolpyruvyl transferase NikO from Streptomyces tendae
Descriptor: NikO protein, SULFATE ION
Authors:Oberdorfer, G, Gruber, K.
Deposit date:2012-06-25
Release date:2012-07-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and functional characterization of NikO, an enolpyruvyl transferase essential in nikkomycin biosynthesis.
J.Biol.Chem., 287, 2012
3D2J
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BU of 3d2j by Molmil
Structure of berberine bridge enzyme from Eschscholzia californica, tetragonal crystal form
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, ...
Authors:Winkler, A, Lyskowski, A, Macheroux, P, Gruber, K.
Deposit date:2008-05-08
Release date:2008-10-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:A concerted mechanism for berberine bridge enzyme
Nat.Chem.Biol., 4, 2008
3ZOH
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BU of 3zoh by Molmil
Crystal structure of FMN-binding protein (YP_005476) from Thermus thermophilus with bound 1-Cyclohex-2-enone
Descriptor: FLAVIN MONONUCLEOTIDE, FLAVOREDOXIN, cyclohex-2-en-1-one
Authors:Pavkov-Keller, T, Steinkellner, G, Gruber, C.C, Steiner, K, Winkler, C, Schwamberger, O, Schwab, H, Faber, K, Gruber, K.
Deposit date:2013-02-21
Release date:2014-05-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Identification of Promiscuous Ene-Reductase Activity by Mining Structural Databases Using Active Site Constellations.
Nat.Commun., 5, 2014

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