PDB Search results for query - Protein Data Bank Japan

PDB: 77 results

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, Y73C/V427C/C255T MUTANT
Descriptor:	GLYCEROL, PROLYL ENDOPEPTIDASE
Authors:	Rea, D, Fulop, V.
Deposit date:	2004-05-14
Release date:	2004-07-01
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Concerted Structural Changes in the Peptidase and the Propeller Domains of Prolyl Oligopeptidase are Required for Substrate Binding J.Mol.Biol., 340, 2004

1O6F

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, D641A MUTANT WITH BOUND PEPTIDE LIGAND SUC-GLY-PRO
Descriptor:	GLYCEROL, GLYCINE, PROLINE, ...
Authors:	Rea, D, Fulop, V.
Deposit date:	2002-09-15
Release date:	2002-11-18
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Substrate-dependent competency of the catalytic triad of prolyl oligopeptidase. J. Biol. Chem., 277, 2002

1O6G

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, D641N MUTANT WITH BOUND PEPTIDE LIGAND SUC-GLY-PRO
Descriptor:	GLYCINE, PROLINE, Prolyl endopeptidase, ...
Authors:	Rea, D, Fulop, V.
Deposit date:	2002-09-15
Release date:	2002-11-18
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.4 Å)
Cite:	Substrate-dependent competency of the catalytic triad of prolyl oligopeptidase. J. Biol. Chem., 277, 2002

1UOP

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, S554A MUTANT WITH BOUND PEPTIDE LIGAND GLY-PHE-GLU-PRO
Descriptor:	GLYCEROL, PEPTIDE LIGAND GLY-PHE-GLU-PRO, PROLYL ENDOPEPTIDASE
Authors:	Rea, D, Fulop, V.
Deposit date:	2003-09-22
Release date:	2003-10-02
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Electrostatic Environment at the Active Site of Prolyl Oligopeptidase is Highly Influential During Substrate Binding J.Biol.Chem., 278, 2003

7ORX

Rhodococcus jostii RHA1 thiamine diphosphate-dependent 4-hydroxybenzoylformate decarboxylase
Descriptor:	Probable benzoylformate decarboxylase, SODIUM ION, THIAMINE DIPHOSPHATE
Authors:	Wilkinson, R.C, Fulop, V.
Deposit date:	2021-06-06
Release date:	2021-06-16
Last modified:	2024-01-31
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	Characterization of Thiamine Diphosphate-Dependent 4-Hydroxybenzoylformate Decarboxylase Enzymes from Biochemistry, 58, 2019

6GSB

Sphingobacterium sp. T2 manganese superoxide dismutase catalyses the oxidative demethylation of polymeric lignin via generation of hydroxyl radical
Descriptor:	MANGANESE (II) ION, Superoxide dismutase
Authors:	Rashid, G.M, Zhang, X, Wilkinson, R.C, Fulop, V, Cottyn, B, Baumberger, S, Bugg, D.H.
Deposit date:	2018-06-13
Release date:	2018-10-03
Last modified:	2024-01-17
Method:	X-RAY DIFFRACTION (1.45 Å)
Cite:	Sphingobacterium sp. T2 Manganese Superoxide Dismutase Catalyzes the Oxidative Demethylation of Polymeric Lignin via Generation of Hydroxyl Radical. ACS Chem. Biol., 13, 2018

6GSC

Sphingobacterium sp. T2 manganese superoxide dismutase catalyses the oxidative demethylation of polymeric lignin via generation of hydroxyl radical
Descriptor:	MANGANESE (II) ION, Superoxide dismutase
Authors:	Rashid, G.M.M, Zhang, X, Wilkinson, R.C, Fulop, V, Cottyn, B, Baumberger, S, Bugg, T.D.H.
Deposit date:	2018-06-13
Release date:	2018-10-03
Last modified:	2024-01-17
Method:	X-RAY DIFFRACTION (1.32 Å)
Cite:	Sphingobacterium sp. T2 Manganese Superoxide Dismutase Catalyzes the Oxidative Demethylation of Polymeric Lignin via Generation of Hydroxyl Radical. ACS Chem. Biol., 13, 2018

5A9G

Manganese Superoxide Dismutase from Sphingobacterium sp. T2
Descriptor:	MANGANESE (II) ION, MANGANESE SUPEROXIDE DISMUTASE
Authors:	Rashid, G.M.M, Taylor, C.R, Liu, Y, Zhang, X, Rea, D, Fulop, V, Bugg, T.D.H.
Deposit date:	2015-07-21
Release date:	2015-08-05
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (1.35 Å)
Cite:	Identification of Manganese Superoxide Dismutase from Sphingobacterium Sp. T2 as a Novel Bacterial Enzyme for Lignin Oxidation. Acs Chem.Biol., 10, 2015

6QSI

Pseudomonas fluorescens Pf-5 thiamine diphosphate-dependent 4-hydroxybenzoylformate decarboxylase
Descriptor:	1,2-ETHANEDIOL, Benzoylformate decarboxylase, SODIUM ION, ...
Authors:	Wilkinson, R.C, Fulop, V.
Deposit date:	2019-02-20
Release date:	2020-01-08
Last modified:	2024-05-15
Method:	X-RAY DIFFRACTION (1.69 Å)
Cite:	Characterization of Thiamine Diphosphate-Dependent 4-Hydroxybenzoylformate Decarboxylase Enzymes fromRhodococcus jostiiRHA1 andPseudomonas fluorescensPf-5 Involved in Degradation of Aryl C2Lignin Degradation Fragments. Biochemistry, 58, 2019

5FW4

Structure of Thermobifida fusca DyP-type Peroxidase and Activity towards Kraft Lignin and Lignin Model Compounds
Descriptor:	DYE-DECOLORIZING PEROXIDASE TFU_3078, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE
Authors:	Rahmanpour, R, Rea, D, Jamshidi, S, Fulop, V, Bugg, T.D.H.
Deposit date:	2016-02-11
Release date:	2016-04-06
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Structure of Thermobifida Fusca Dyp-Type Peroxidase and Activity Towards Kraft Lignin and Lignin Model Compounds. Arch.Biochem.Biophys., 594, 2016

2C1U

CRYSTAL STRUCTURE OF THE DI-HAEM CYTOCHROME C PEROXIDASE FROM PARACOCCUS PANTOTROPHUS - OXIDISED FORM
Descriptor:	CALCIUM ION, DI-HAEM CYTOCHROME C PEROXIDASE, HEME C
Authors:	Echalier, A, Fulop, V.
Deposit date:	2005-09-21
Release date:	2006-01-13
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.95 Å)
Cite:	Activation and Catalysis of the Di-Heme Cytochrome C Peroxidase from Paracoccus Pantotrophus Structure, 14, 2006

2C1V

CRYSTAL STRUCTURE OF THE DI-HAEM CYTOCHROME C PEROXIDASE FROM PARACOCCUS PANTOTROPHUS - Mixed VALENCE FORM
Descriptor:	1,2-ETHANEDIOL, CALCIUM ION, DI-HAEM CYTOCHROME C PEROXIDASE, ...
Authors:	Echalier, A, Fulop, V.
Deposit date:	2005-09-21
Release date:	2006-01-13
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.2 Å)
Cite:	Activation and Catalysis of the Di-Heme Cytochrome C Peroxidase from Paracoccus Pantotrophus Structure, 14, 2006

7KY1

Molecular basis for control of antibiotic production by a bacterial hormones
Descriptor:	TetR family transcriptional regulator
Authors:	Bhukya, H, Fulop, V.
Deposit date:	2020-12-06
Release date:	2021-02-03
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (1.5000335 Å)
Cite:	Molecular basis for control of antibiotic production by a bacterial hormone. Nature, 590, 2021

2XDW

Inhibition of Prolyl Oligopeptidase with a Synthetic Unnatural Dipeptide
Descriptor:	GLYCEROL, PROLYL ENDOPEPTIDASE, SYNTHETIC PEPTIDE PHQ-PRO-YCP, ...
Authors:	Racys, D.T, Rea, D, Fulop, V, Wills, M.
Deposit date:	2010-05-09
Release date:	2010-06-23
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (1.35 Å)
Cite:	Inhibition of Prolyl Oligopeptidase with a Synthetic Unnatural Dipeptide Bioorg.Med.Chem., 18, 2010

1H2Z

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, S554A MUTANT WITH BOUND PEPTIDE LIGAND SUC-GLY-PRO
Descriptor:	GLYCEROL, GLYCINE, PROLINE, ...
Authors:	Rea, D, Fulop, V.
Deposit date:	2002-08-20
Release date:	2002-11-11
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.65 Å)
Cite:	Electrostatic Effects and Binding Determinants in the Catalysis of Prolyl Oligopeptidase: Site Specific Mutagenesis at the Oxyanion Binding Site J.Biol.Chem., 277, 2002

1H2Y

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, Y473F MUTANT WITH COVALENTLY BOUND INHIBITOR Z-PRO-PROLINAL
Descriptor:	GLYCEROL, N-BENZYLOXYCARBONYL-L-PROLYL-L-PROLINAL, PROLYL ENDOPEPTIDASE
Authors:	Rea, D, Fulop, V.
Deposit date:	2002-08-20
Release date:	2002-11-11
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.78 Å)
Cite:	Electrostatic Effects and Binding Determinants in the Catalysis of Prolyl Oligopeptidase: Site Specific Mutagenesis at the Oxyanion Binding Site J.Biol.Chem., 277, 2002

1AOM

SUBSTRATE AND PRODUCT BOUND TO CYTOCHROME CD1 NITRITE REDUCTASE
Descriptor:	HEME D, NITRIC OXIDE, NITRITE REDUCTASE, ...
Authors:	Williams, P.A, Fulop, V.
Deposit date:	1997-07-08
Release date:	1998-02-04
Last modified:	2011-07-13
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Haem-ligand switching during catalysis in crystals of a nitrogen-cycle enzyme. Nature, 389, 1997

1AOF

CYTOCHROME CD1 NITRITE REDUCTASE, REDUCED FORM
Descriptor:	HEME D, NITRITE REDUCTASE, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:	Williams, P.A, Fulop, V.
Deposit date:	1997-07-02
Release date:	1997-10-15
Last modified:	2011-07-13
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Haem-ligand switching during catalysis in crystals of a nitrogen-cycle enzyme. Nature, 389, 1997

1UQ4

RICIN A-CHAIN (RECOMBINANT) R213D MUTANT
Descriptor:	RICIN, SULFATE ION
Authors:	Marsden, C.J, Fulop, V.
Deposit date:	2003-10-15
Release date:	2004-01-02
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	The Effect of Mutations Surrounding and within the Active Site on the Catalytic Activity of Ricin a Chain Eur.J.Biochem., 271, 2004

2VWT

Crystal structure of YfaU, a metal ion dependent class II aldolase from Escherichia coli K12 - Mg-pyruvate product complex
Descriptor:	GLYCEROL, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:	Rea, D, Rakus, J.F, Gerlt, J.A, Fulop, V, Bugg, T.D.H, Roper, D.I.
Deposit date:	2008-06-26
Release date:	2008-09-09
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.93 Å)
Cite:	Crystal Structure and Functional Assignment of Yfau, a Metal Ion Dependent Class II Aldolase from Escherichia Coli K12. Biochemistry, 47, 2008

2VWS

Crystal structure of YfaU, a metal ion dependent class II aldolase from Escherichia coli K12
Descriptor:	GLYCEROL, PHOSPHATE ION, YFAU, ...
Authors:	Rea, D, Rakus, J.F, Gerlt, J.A, Fulop, V, Bugg, T.D.H, Roper, D.I.
Deposit date:	2008-06-26
Release date:	2008-09-09
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.39 Å)
Cite:	Crystal Structure and Functional Assignment of Yfau, a Metal Ion Dependent Class II Aldolase from Escherichia Coli K12. Biochemistry, 47, 2008

1AOQ

CYTOCHROME CD1 NITRITE REDUCTASE WITH SUBSTRATE AND PRODUCT BOUND
Descriptor:	HEME D, NITRIC OXIDE, NITRITE REDUCTASE, ...
Authors:	Williams, P.A, Fulop, V.
Deposit date:	1997-07-09
Release date:	1998-02-04
Last modified:	2011-07-13
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Haem-ligand switching during catalysis in crystals of a nitrogen-cycle enzyme. Nature, 389, 1997

1UQ5

RICIN A-CHAIN (RECOMBINANT) N122A MUTANT
Descriptor:	ACETATE ION, RICIN, SULFATE ION
Authors:	Marsden, C.J, Fulop, V.
Deposit date:	2003-10-15
Release date:	2004-01-02
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.4 Å)
Cite:	The Effect of Mutations Surrounding and within the Active Site on the Catalytic Activity of Ricin a Chain Eur.J.Biochem., 271, 2004

2V5J

Apo Class II aldolase HpcH
Descriptor:	2,4-DIHYDROXYHEPT-2-ENE-1,7-DIOIC ACID ALDOLASE, GLYCEROL, PHOSPHATE ION
Authors:	Rea, D, Fulop, V, Bugg, T.D.H, Roper, D.I.
Deposit date:	2007-07-05
Release date:	2007-10-02
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Structure and Mechanism of Hpch: A Metal Ion Dependent Class II Aldolase from the Homoprotocatechuate Degradation Pathway of Escherichia Coli. J.Mol.Biol., 373, 2007

2V5K

Class II aldolase HpcH - magnesium - oxamate complex
Descriptor:	2,4-DIHYDROXYHEPT-2-ENE-1,7-DIOIC ACID ALDOLASE, MAGNESIUM ION, OXAMIC ACID, ...
Authors:	Rea, D, Fulop, V, Bugg, T.D.H, Roper, D.I.
Deposit date:	2007-07-06
Release date:	2007-10-02
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Structure and Mechanism of Hpch: A Metal Ion Dependent Class II Aldolase from the Homoprotocatechuate Degradation Pathway of Escherichia Coli. J.Mol.Biol., 373, 2007

<123 4 >

Total results:	77
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Fulop, V"