1H2Y

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, Y473F MUTANT WITH COVALENTLY BOUND INHIBITOR Z-PRO-PROLINAL

Summary for 1H2Y

• Entry DOI: 10.2210/pdb1h2y/pdb
• Related: 1E5T 1E8M 1E8N 1H2W 1H2X 1H2Z 1O6F 1O6G 1QFM 1QFS
• Related PRD ID: PRD_000692
• Descriptor: PROLYL ENDOPEPTIDASE, N-BENZYLOXYCARBONYL-L-PROLYL-L-PROLINAL, GLYCEROL, ... (4 entities in total)
• Functional Keywords: hydrolase, prolyl oligopeptidase, amnesia, alpha/ beta- hydrolase, beta-propeller, serine protease
• Biological source: SUS SCROFA (PIG)
• Cellular location: Cytoplasm: P23687
• Total number of polymer chains: 1
• Total formula weight: 81639.19

Authors

Rea, D.,Fulop, V. (deposition date: 2002-08-20, release date: 2002-11-11, Last modification date: 2024-11-06)

Primary citation

Szeltner, Z.,Rea, D.,Renner, V.,Fulop, V.,Polgar, L.
Electrostatic Effects and Binding Determinants in the Catalysis of Prolyl Oligopeptidase: Site Specific Mutagenesis at the Oxyanion Binding Site
J.Biol.Chem., 277:42613-, 2002

PubMed Abstract: Prolyl oligopeptidase, a member of a new family of serine peptidases, plays an important role in memory disorders. Earlier x-ray crystallographic investigations indicated that stabilization of the tetrahedral transition state of the reaction involved hydrogen bond formation between the oxyanion of the tetrahedral intermediate and the OH group of Tyr(473). The contribution of the OH group was tested with the Y473F variant using various substrates. The charged succinyl-Gly-Pro-4-nitroanilide was hydrolyzed with a much lower k(cat)/K(m) compared with the neutral benzyloxycarbonyl-G1y-Pro-2-naphthylamide, although the binding modes of the two substrates were similar, as shown by x-ray crystallography. This suggested that electrostatic interactions between Arg(643) and the succinyl group competed with the productive binding mechanism. Unlike most enzyme reactions, catalysis by the wild-type enzyme exhibited positive activation entropy. In contrast, the activation entropy for the Y473F variant was negative, suggesting that the tyrosine OH group is involved in stabilizing both the transition state and the water shell at the active site. Importantly, Tyr(473) is also implicated in the formation of the enzyme-substrate complex. The nonlinear Arrhenius plot suggested a greater significance of the oxyanion binding site at physiological temperature. The results indicated that Tyr(473) was more needed at high pH, at high temperature, and with charged substrates exhibiting "internally competitive inhibition."

PubMed: 12202494
DOI: 10.1074/JBC.M208043200

Experimental method

X-RAY DIFFRACTION (1.78 Å)