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PDB: 151 件

5MX6
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BU of 5mx6 by Molmil
Crystal structure of H. pylori purine nucleoside phosphorylase from clinical isolate HpPNP-2
分子名称: ACETATE ION, DI(HYDROXYETHYL)ETHER, HYPOXANTHINE, ...
著者Stefanic, Z.
登録日2017-01-21
公開日2017-04-05
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献Structural characterization of purine nucleoside phosphorylase from human pathogen Helicobacter pylori.
Int. J. Biol. Macromol., 101, 2017
9F17
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BU of 9f17 by Molmil
Crystal structure of N term His-tag Adenylosuccinate synthetase from Helicobacter pylori
分子名称: Adenylosuccinate synthetase, CALCIUM ION, GLYCEROL, ...
著者Stefanic, Z.
登録日2024-04-18
公開日2024-09-04
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Location Is Everything: Influence of His-Tag Fusion Site on Properties of Adenylosuccinate Synthetase from Helicobacter pylori.
Int J Mol Sci, 25, 2024
8SCP
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BU of 8scp by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 1h
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
著者Fang, Z, Lelyveld, V.S, Szostak, J.W.
登録日2023-04-05
公開日2023-10-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCR
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BU of 8scr by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 4h
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
著者Fang, Z, Lelyveld, V.S, Szostak, J.W.
登録日2023-04-05
公開日2023-10-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCQ
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BU of 8scq by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 2h
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
著者Fang, Z, Lelyveld, V.S, Szostak, J.W.
登録日2023-04-05
公開日2023-10-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCS
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BU of 8scs by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 8h
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
著者Fang, Z, Lelyveld, V.S, Szostak, J.W.
登録日2023-04-05
公開日2023-10-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
6CC9
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BU of 6cc9 by Molmil
NMR data-driven model of GTPase KRas-GMPPNP:Cmpd2 complex tethered to a nanodisc
分子名称: (2R,4S)-4-[(5-bromo-1H-indole-3-carbonyl)amino]-2-[(4-chlorophenyl)methyl]piperidin-1-ium, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, ...
著者Fang, Z, Marshall, C.B, Nishikawa, T, Gossert, A.D, Jansen, J.M, Jahnke, W, Ikura, M.
登録日2018-02-06
公開日2018-09-05
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Inhibition of K-RAS4B by a Unique Mechanism of Action: Stabilizing Membrane-Dependent Occlusion of the Effector-Binding Site.
Cell Chem Biol, 25, 2018
6PTS
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BU of 6pts by Molmil
NMR data-driven model of KRas-GMPPNP:RBD-CRD complex tethered to a nanodisc (state A)
分子名称: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, GTPase KRas, ...
著者Fang, Z, Lee, K, Gasmi-Seabrook, G, Ikura, M, Marshall, C.B.
登録日2019-07-16
公開日2020-05-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Multivalent assembly of KRAS with the RAS-binding and cysteine-rich domains of CRAF on the membrane.
Proc.Natl.Acad.Sci.USA, 117, 2020
6PTW
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BU of 6ptw by Molmil
NMR data-driven model of KRas-GMPPNP:RBD-CRD complex tethered to a nanodisc (state B)
分子名称: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, GTPase KRas, ...
著者Fang, Z, Lee, K, Gasmi-Seabrook, G, Ikura, M, Marshall, C.B.
登録日2019-07-16
公開日2020-05-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Multivalent assembly of KRAS with the RAS-binding and cysteine-rich domains of CRAF on the membrane.
Proc.Natl.Acad.Sci.USA, 117, 2020
6CCX
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BU of 6ccx by Molmil
NMR data-driven model of GTPase KRas-GMPPNP:Cmpd2 complex tethered to a nanodisc
分子名称: (2R,4S)-4-[(5-bromo-1H-indole-3-carbonyl)amino]-2-[(4-chlorophenyl)methyl]piperidin-1-ium, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, ...
著者Fang, Z, Marshall, C.B, Nishikawa, T, Gossert, A.D, Jansen, J.M, Jahnke, W, Ikura, M.
登録日2018-02-07
公開日2018-09-05
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Inhibition of K-RAS4B by a Unique Mechanism of Action: Stabilizing Membrane-Dependent Occlusion of the Effector-Binding Site.
Cell Chem Biol, 25, 2018
6CCH
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BU of 6cch by Molmil
NMR data-driven model of GTPase KRas-GMPPNP tethered to a nanodisc (E3 state)
分子名称: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, GTPase KRas, ...
著者Fang, Z, Marshall, C.B, Nishikawa, T, Gossert, A.D, Jansen, J.M, Jahnke, W, Ikura, M.
登録日2018-02-07
公開日2018-08-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Inhibition of K-RAS4B by a Unique Mechanism of Action: Stabilizing Membrane-Dependent Occlusion of the Effector-Binding Site.
Cell Chem Biol, 25, 2018
8SCT
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BU of 8sct by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 24h
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
著者Fang, Z, Lelyveld, V.S, Szostak, J.W.
登録日2023-04-05
公開日2023-10-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
3UT6
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BU of 3ut6 by Molmil
Crystal structure of E. Coli PNP complexed with PO4 and formycin A
分子名称: (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol, PHOSPHATE ION, Purine nucleoside phosphorylase deoD-type
著者Stefanic, Z.
登録日2011-11-25
公開日2012-05-23
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.895 Å)
主引用文献New phosphate binding sites in the crystal structure of Escherichia coli purine nucleoside phosphorylase complexed with phosphate and formycin A.
Febs Lett., 586, 2012
5USE
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BU of 5use by Molmil
5-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant
分子名称: DNA (5'-D(*AP*TP*GP*(T5S)P*CP*G)-3'), MAGNESIUM ION, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), ...
著者Fang, Z, Qin, L, Huang, Z.
登録日2017-02-13
公開日2017-03-08
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate
Chemistryselect, 8, 2023
5USG
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BU of 5usg by Molmil
5-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant
分子名称: DNA (5'-D(*AP*(T5S)P*GP*(T5S)P*CP*G)-3'), MAGNESIUM ION, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), ...
著者Fang, Z, Qin, L, Huang, Z.
登録日2017-02-13
公開日2017-03-08
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate
Chemistryselect, 8, 2023
5US2
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BU of 5us2 by Molmil
2-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant
分子名称: DNA (5'-D(*AP*(US3)P*GP*TP*CP*G)-3'), MAGNESIUM ION, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), ...
著者Fang, Z, Yang, F, Huang, Z.
登録日2017-02-13
公開日2017-03-08
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献2-Se-T-modified-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant
To Be Published
5USA
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BU of 5usa by Molmil
5-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant
分子名称: DNA (5'-D(*AP*(T5S)P*GP*TP*CP*G)-3'), MAGNESIUM ION, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), ...
著者Fang, Z, Qin, L, Huang, Z.
登録日2017-02-13
公開日2017-03-08
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate
Chemistryselect, 8, 2023
5W7N
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BU of 5w7n by Molmil
2-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant
分子名称: DNA (5'-D(*AP*(US3)P*GP*(US3)P*CP*G)-3'), MAGNESIUM ION, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), ...
著者Fang, Z, Yang, F, Huang, Z.
登録日2017-06-20
公開日2017-06-28
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献2-Se-T2/4-modified-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant
To Be Published
5MX8
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BU of 5mx8 by Molmil
Crystal structure of H. pylori purine nucleoside phosphorylase from clinical isolate HpPNP-3
分子名称: HYPOXANTHINE, PHOSPHATE ION, Purine nucleoside phosphorylase DeoD-type, ...
著者Stefanic, Z.
登録日2017-01-21
公開日2017-04-05
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural characterization of purine nucleoside phosphorylase from human pathogen Helicobacter pylori.
Int. J. Biol. Macromol., 101, 2017
8TDY
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BU of 8tdy by Molmil
16mer self-complementary duplex RNA with D:U pair sequence 1
分子名称: MAGNESIUM ION, RNA
著者Fang, Z, Jia, X, Szostak, J.W.
登録日2023-07-05
公開日2024-06-12
最終更新日2024-06-26
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Diaminopurine in Nonenzymatic RNA Template Copying.
J.Am.Chem.Soc., 146, 2024
8TE2
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BU of 8te2 by Molmil
16mer self-complementary duplex RNA with D:C pair sequence 2
分子名称: CALCIUM ION, RNA
著者Fang, Z, Jia, X, Szostak, J.W.
登録日2023-07-05
公開日2024-06-12
最終更新日2024-06-26
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Diaminopurine in Nonenzymatic RNA Template Copying.
J.Am.Chem.Soc., 146, 2024
9JJI
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BU of 9jji by Molmil
Local refinement of RHDV GI.2 T=1 VLP
分子名称: Capsid protein
著者Ruan, Z, Shao, Q, Song, Y, Hu, B, Fan, Z, Wei, H, Liu, Y, Wang, F, Fang, Q.
登録日2024-09-13
公開日2024-10-16
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Near-atomic structures of RHDV reveal insights into capsid assembly and different conformations between mature virion and VLP
J.Virol.
9JJH
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BU of 9jjh by Molmil
Cryo-EM structure of a T=1 VLP of RHDV GI.2 with N-terminal 1-37 residues truncated
分子名称: Capsid protein
著者Ruan, Z, Shao, Q, Song, Y, Hu, B, Fan, Z, Wei, H, Liu, Y, Wang, F, Fang, Q.
登録日2024-09-13
公開日2024-10-16
実験手法ELECTRON MICROSCOPY (2.4 Å)
主引用文献Near-atomic structures of RHDV reveal insights into capsid assembly and different conformations between mature virion and VLP
J.Virol.
9JJJ
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BU of 9jjj by Molmil
Cryo-EM structure of a T=3 VLP of RHDV GI.2
分子名称: Capsid protein
著者Ruan, Z, Shao, Q, Song, Y, Hu, B, Fan, Z, Wei, H, Liu, Y, Wang, F, Fang, Q.
登録日2024-09-13
公開日2024-10-16
実験手法ELECTRON MICROSCOPY (2.45 Å)
主引用文献Near-atomic structures of RHDV reveal insights into capsid assembly and different conformations between mature virion and VLP
J.Virol.
9JJG
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BU of 9jjg by Molmil
Cryo-EM structure of RHDV GI.2 virion
分子名称: Genome polyprotein
著者Ruan, Z, Shao, Q, Song, Y, Hu, B, Fan, Z, Wei, H, Liu, Y, Wang, F, Fang, Q.
登録日2024-09-13
公開日2024-10-16
実験手法ELECTRON MICROSCOPY (2.46 Å)
主引用文献Near-atomic structures of RHDV reveal insights into capsid assembly and different conformations between mature virion and VLP
J.Virol., 2014

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件を2024-10-30に公開中

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