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PDB: 74 件
7L3R
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BU of 7l3r by Molmil
23S Sarcin Ricin Loop with a 3-deazapurine A2670
分子名称: GLYCEROL, RNA (27-MER)
著者Ennifar, E, Renard, E.
登録日2020-12-18
公開日2021-05-05
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.01 Å)
主引用文献Impact of 3-deazapurine nucleobases on RNA properties.
Nucleic Acids Res., 49, 2021
8PUT
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BU of 8put by Molmil
IF5A in complex with Deoxyhypusine synthase
分子名称: DI(HYDROXYETHYL)ETHER, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Probable deoxyhypusine synthase, ...
著者Ennifar, E, D'agostino, M.
登録日2023-07-17
公開日2024-07-03
最終更新日2024-07-24
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of archaeal IF5A-DHS complex reveals insights into the hypusination mechanism.
Structure, 32, 2024
7QP2
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BU of 7qp2 by Molmil
1-deazaguanosine modified-RNA Sarcin Ricin Loop
分子名称: GLYCEROL, RNA (27-MER)
著者Ennifar, E, Micura, R, Bereiter, R, Renard, E, Kreutz, C.
登録日2021-12-30
公開日2022-07-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (0.9 Å)
主引用文献1-Deazaguanosine-Modified RNA: The Missing Piece for Functional RNA Atomic Mutagenesis.
J.Am.Chem.Soc., 144, 2022
6XUR
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BU of 6xur by Molmil
RNA dodecamer with a 6-hydrazino-2-aminopurine modified base
分子名称: MAGNESIUM ION, RNA dodecamer with a 6-hydrazino-2-aminopurine modified base
著者Ennifar, E, Micura, R, Gasser, C, Brillet, K.
登録日2020-01-21
公開日2020-02-19
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Thioguanosine Conversion Enables mRNA-Lifetime Evaluation by RNA Sequencing Using Double Metabolic Labeling (TUC-seq DUAL).
Angew.Chem.Int.Ed.Engl., 59, 2020
4Y27
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BU of 4y27 by Molmil
E.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662
分子名称: 27-mer 23S Sarcin-Ricil Loop
著者Ennifar, E, Micura, R, Fluer, S.
登録日2015-02-09
公開日2015-11-18
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (0.998 Å)
主引用文献Role of a ribosomal RNA phosphate oxygen during the EF-G-triggered GTP hydrolysis.
Proc.Natl.Acad.Sci.USA, 112, 2015
6XUS
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BU of 6xus by Molmil
RNA dodecamer with a 6-hydrazino-2-aminopurine modified base
分子名称: MAGNESIUM ION, RNA dodecamer with a 6-hydrazino-2-aminopurine modified base, SODIUM ION
著者Ennifar, E, Micura, R, Gasser, C, Brillet, K.
登録日2020-01-21
公開日2021-02-03
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Thioguanosine Conversion Enables mRNA-Lifetime Evaluation by RNA Sequencing Using Double Metabolic Labeling (TUC-seq DUAL).
Angew.Chem.Int.Ed.Engl., 59, 2020
7QSH
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BU of 7qsh by Molmil
23S ribosomal RNA Sarcin Ricin Loop 27-nt fragment containing a Xanthosine residue at position 2648
分子名称: 23S ribosomal RNA Sarcin Ricin Loop 27-nucleotide fragment, 9-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-[[tris(oxidanyl)-$l^{5}-phosphanyl]oxymethyl]oxolan-2-yl]-2-oxidanyl-1~{H}-purin-6-one, GLYCEROL, ...
著者Ennifar, E, Micura, R.
登録日2022-01-13
公開日2023-01-25
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (0.86 Å)
主引用文献Towards a comprehensive understanding of RNA deamination: synthesis and properties of xanthosine-modified RNA.
Nucleic Acids Res., 50, 2022
7QUA
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BU of 7qua by Molmil
Duplex RNA containing Xanthosine-Cytosine base pairs
分子名称: MAGNESIUM ION, RNA (5'-R(*CP*GP*CP*GP*(XAN)P*AP*UP*UP*AP*GP*CP*G)-3'), SODIUM ION
著者Ennifar, E, Micura, R.
登録日2022-01-17
公開日2023-01-25
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Towards a comprehensive understanding of RNA deamination: synthesis and properties of xanthosine-modified RNA.
Nucleic Acids Res., 50, 2022
7QTN
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BU of 7qtn by Molmil
Duplex RNA containing Xanthosine-Cytosine base pairs
分子名称: RNA (5'-R(*GP*GP*UP*AP*(RY)P*UP*GP*CP*GP*(XAN)P*UP*AP*CP*C)-3'), RNA (5'-R(*GP*GP*UP*AP*CP*UP*GP*CP*GP*(XAM)P*UP*AP*CP*C)-3')
著者Ennifar, E, Micura, R.
登録日2022-01-14
公開日2023-01-25
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Towards a comprehensive understanding of RNA deamination: synthesis and properties of xanthosine-modified RNA.
Nucleic Acids Res., 50, 2022
3ISN
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BU of 3isn by Molmil
Crystal structure of HIV-1 RT bound to A 6-vinylpyrimidine inhibitor
分子名称: 6-ethenyl-N,N-dimethyl-2-(methylsulfonyl)pyrimidin-4-amine, Reverse transcriptase/ribonuclease H, p51 RT
著者Ennifar, E, Freisz, S, Bec, G, Dumas, P, Botta, M, Radi, M.
登録日2009-08-26
公開日2010-03-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structure of HIV-1 Reverse Transcriptase Bound to a Non-Nucleoside Inhibitor with a Novel Mechanism of Action
Angew.Chem.Int.Ed.Engl., 49, 2010
1F7Y
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BU of 1f7y by Molmil
THE CRYSTAL STRUCTURE OF TWO UUCG LOOPS HIGHLIGHTS THE ROLE PLAYED BY 2'-HYDROXYL GROUPS IN ITS UNUSUAL STABILITY
分子名称: 16S RIBOSOMAL RNA FRAGMENT, 30S RIBOSOMAL PROTEIN S15, MAGNESIUM ION, ...
著者Ennifar, E, Nikouline, A, Serganov, A, Tishchenko, S, Nevskaya, N, Garber, M, Ehresmann, B, Ehresmann, C, Nikonov, S, Dumas, P.
登録日2000-06-28
公開日2000-11-22
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The crystal structure of UUCG tetraloop.
J.Mol.Biol., 304, 2000
5MRX
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BU of 5mrx by Molmil
27-nt SRL with a 5-hydroxymethyl cytidine modification
分子名称: RNA (27-MER)
著者Ennifar, E, Micura, R.
登録日2016-12-28
公開日2018-01-17
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (0.851 Å)
主引用文献Synthesis, Thermodynamic Properties, and Crystal Structure of RNA Oligonucleotides Containing 5-Hydroxymethylcytosine
J.Org.Chem., 2017
1WVD
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BU of 1wvd by Molmil
HIV-1 Dis(Mal) Duplex CoCl2-Soaked
分子名称: 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', COBALT (II) ION
著者Ennifar, E, Walter, P, Dumas, P.
登録日2004-12-15
公開日2004-12-21
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.93 Å)
主引用文献A crystallographic study of the binding of 13 metal ions to two related RNA duplexes
Nucleic Acids Res., 31, 2003
462D
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BU of 462d by Molmil
CRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITE
分子名称: MAGNESIUM ION, RNA (5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G) -3')
著者Ennifar, E, Yusupov, M, Walter, P, Marquet, R, Ehresmann, C, Ehresmann, B, Dumas, P.
登録日1999-03-18
公開日1999-12-02
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The crystal structure of the dimerization initiation site of genomic HIV-1 RNA reveals an extended duplex with two adenine bulges.
Structure Fold.Des., 7, 1999
4NXH
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BU of 4nxh by Molmil
2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin Loop
分子名称: 23S ribosomal RNA Sarcin Ricin Loop, GLYCEROL, SULFATE ION
著者Ennifar, E, Micura, R, Kosutic, M.
登録日2013-12-09
公開日2014-12-10
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.158 Å)
主引用文献Surprising base pairing and structural properties of 2'-trifluoromethylthio-modified ribonucleic acids.
J.Am.Chem.Soc., 136, 2014
6Y0Y
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BU of 6y0y by Molmil
Sarcin Ricin Loop, mutant C2666U
分子名称: MAGNESIUM ION, RNA (27-MER), SODIUM ION
著者Ennifar, E, Westhof, E.
登録日2020-02-10
公開日2021-02-17
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Sarcin Ricin Loop, mutant C2666U
To Be Published
6Y0T
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BU of 6y0t by Molmil
Sarcin Ricin Loop, mutant C2666A U2653G C2667A
分子名称: MAGNESIUM ION, POTASSIUM ION, RNA (27-MER)
著者Ennifar, E, Westhof, E.
登録日2020-02-10
公開日2021-02-17
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.393 Å)
主引用文献Sarcin Ricin Loop, mutant C2666A U2653G C2667A
To Be Published
6ZXZ
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BU of 6zxz by Molmil
Sarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modification
分子名称: POTASSIUM ION, SODIUM ION, Sarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modification
著者Ennifar, E.
登録日2020-07-30
公開日2020-12-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.44 Å)
主引用文献2'- O -Trifluoromethylated RNA - a powerful modification for RNA chemistry and NMR spectroscopy.
Chem Sci, 11, 2020
6ZYB
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BU of 6zyb by Molmil
Sarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modification
分子名称: Sarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modification
著者Ennifar, E.
登録日2020-07-31
公開日2020-12-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (0.9 Å)
主引用文献2'- O -Trifluoromethylated RNA - a powerful modification for RNA chemistry and NMR spectroscopy.
Chem Sci, 11, 2020
5NQI
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BU of 5nqi by Molmil
E.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modification
分子名称: E.Coli 27-mer SRL RNA
著者Ennifar, E, Micura, R.
登録日2017-04-20
公開日2017-07-26
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (0.851 Å)
主引用文献Synthesis, Thermodynamic Properties, and Crystal Structure of RNA Oligonucleotides Containing 5-Hydroxymethylcytosine.
J. Org. Chem., 82, 2017
1K9W
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BU of 1k9w by Molmil
HIV-1(MAL) RNA Dimerization Initiation Site
分子名称: HIV-1 DIS(Mal)UU RNA, MAGNESIUM ION
著者Ennifar, E, Walter, P, Ehresmann, B, Ehresmann, C, Dumas, P.
登録日2001-10-31
公開日2001-11-30
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site.
Nat.Struct.Biol., 8, 2001
4NMG
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BU of 4nmg by Molmil
2'-Trifluoromethylthio-2'-deoxyuridine-modified SRL
分子名称: 23S ribosomal RNA Sarcin Ricin Loop
著者Ennifar, E, Micura, R, Kosutic, M.
登録日2013-11-15
公開日2014-11-19
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.01 Å)
主引用文献Surprising base pairing and structural properties of 2'-trifluoromethylthio-modified ribonucleic acids.
J.Am.Chem.Soc., 136, 2014
4NLF
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BU of 4nlf by Molmil
2'-trifluoromethylthio-2'-deoxycytidine-modified SRL
分子名称: 23S ribosomal RNA Sarcin Ricin Loop, SULFATE ION
著者Ennifar, E, Micura, R, Kosutic, M.
登録日2013-11-14
公開日2014-11-19
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Surprising base pairing and structural properties of 2'-trifluoromethylthio-modified ribonucleic acids.
J.Am.Chem.Soc., 136, 2014
1NLC
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BU of 1nlc by Molmil
HIV-1 DIS(Mal) duplex Zn-soaked
分子名称: HIV-1 DIS(MAL) genomic RNA, ZINC ION
著者Ennifar, E, Walter, P, Dumas, P.
登録日2003-01-07
公開日2003-05-13
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献A crystallographic study of the binding of 13 metal ions to two related RNA duplexes.
Nucleic Acids Res., 31, 2003
3S8U
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BU of 3s8u by Molmil
Crystal structure of a 2-azido-adenine-modified RNA
分子名称: Ecoli 23 S rRNA Sarcin Ricin loop
著者Ennifar, E, Micura, R.
登録日2011-05-31
公開日2012-04-11
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献2'-Azido RNA, a Versatile Tool for Chemical Biology: Synthesis, X-ray Structure, siRNA Applications, Click Labeling.
Acs Chem.Biol., 7, 2012

 

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件を2025-04-02に公開中

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