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PDB: 40736 results

3G1L
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EthR from Mycobacterium tuberculosis in complex with compound BDM14744
Descriptor: 3-(4-fluorophenyl)-5-phenyl-4H-1,2,4-triazole, TRANSCRIPTIONAL REGULATORY REPRESSOR PROTEIN (TETR-FAMILY) ETHR
Authors:Willand, N, Dirie, B, Carette, X, Bifani, P, Singhal, A, Desroses, M, Leroux, F, Willery, E, Mathys, V, Deprez-Poulain, R, Delcroix, G, Frenois, F, Aumercier, M, Locht, C, Villeret, V, Deprez, B, Baulard, A.R.
Deposit date:2009-01-30
Release date:2009-07-21
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Synthetic EthR inhibitors boost antituberculous activity of ethionamide.
Nat.Med. (N.Y.), 15, 2009
6TRP
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BU of 6trp by Molmil
Solution Structure of Docking Domain Complex of Pax NRPS: PaxC NDD - PaxB CDD
Descriptor: Peptide synthetase XpsB,Peptide synthetase XpsB
Authors:Watzel, J, Hacker, C, Duchardt-Ferner, E, Bode, H.B, Woehnert, J.
Deposit date:2019-12-19
Release date:2020-08-12
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:A New Docking Domain Type in the Peptide-Antimicrobial-Xenorhabdus Peptide Producing Nonribosomal Peptide Synthetase fromXenorhabdus bovienii.
Acs Chem.Biol., 15, 2020
3G6S
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Crystal structure of the endonuclease/exonuclease/phosphatase (BVU_0621) from Bacteroides vulgatus. Northeast Structural Genomics Consortium Target BvR56D
Descriptor: Putative endonuclease/exonuclease/phosphatase family protein
Authors:Forouhar, F, Lew, S, Seetharaman, J, Xiao, R, Sahdev, S, Foote, E.L, Ciccosanti, C, Wang, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-02-08
Release date:2009-02-17
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the endonuclease/exonuclease/phosphatase (BVU_0621) from Bacteroides vulgatus.
To be Published
1ACF
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ACANTHAMOEBA CASTELLANII PROFILIN IB
Descriptor: PROFILIN I
Authors:Fedorov, A.A, Magnus, K.A, Graupe, M.H, Lattman, E.E, Pollard, T.D, Almo, S.C.
Deposit date:1994-07-29
Release date:1994-08-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray structures of isoforms of the actin-binding protein profilin that differ in their affinity for phosphatidylinositol phosphates.
Proc.Natl.Acad.Sci.USA, 91, 1994
4U1G
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BU of 4u1g by Molmil
Plasmodium falciparum reticulocyte-binding protein homologue 5 (PfRH5) bound to monoclonal antibody QA1
Descriptor: QA1 monoclonal antibody heavy chain, QA1 monoclonal antibody light chain, Reticulocyte binding protein 5
Authors:Wright, K.E, Hjerrild, K.A, Bartlett, J, Douglas, A.D, Jin, J, Brown, R.E, Ashfield, R, Clemmensen, S.B, de Jongh, W.A, Draper, S.J, Higgins, M.K.
Deposit date:2014-07-15
Release date:2014-08-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of malaria invasion protein RH5 with erythrocyte basigin and blocking antibodies.
Nature, 515, 2014
1AFV
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HIV-1 CAPSID PROTEIN (P24) COMPLEX WITH FAB25.3
Descriptor: ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN), ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN), HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN, ...
Authors:Momany, C, Kovari, L.C, Prongay, A.J, Keller, W, Gitti, R.K, Lee, B.M, Gorbalenya, A.E, Tong, L, Mcclure, J, Ehrlich, L.S, Summers, M.F, Carter, C, Rossmann, M.G.
Deposit date:1997-03-14
Release date:1997-08-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Crystal structure of dimeric HIV-1 capsid protein.
Nat.Struct.Biol., 3, 1996
7M5O
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BU of 7m5o by Molmil
Cryo-EM structure of CasPhi-2 (Cas12j) bound to crRNA
Descriptor: CasPhi, ZINC ION, crRNA
Authors:Pausch, P, Soczek, K, Nogales, E, Doudna, J.
Deposit date:2021-03-24
Release date:2021-08-04
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.54 Å)
Cite:DNA interference states of the hypercompact CRISPR-Cas Phi effector.
Nat.Struct.Mol.Biol., 28, 2021
3FRZ
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Crystal Structure of HCV NS5B RNA polymerase in complex with PF868554
Descriptor: (6R)-6-cyclopentyl-6-[2-(2,6-diethylpyridin-4-yl)ethyl]-3-[(5,7-dimethyl[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)methyl]-4-hydroxy-5,6-dihydro-2H-pyran-2-one, BETA-MERCAPTOETHANOL, N-[(benzyloxy)carbonyl]-L-alpha-glutamyl-N-[(1S)-4-oxo-4-phenyl-1-propylbut-2-en-1-yl]-L-phenylalaninamide, ...
Authors:Parge, H.E.
Deposit date:2009-01-08
Release date:2009-03-10
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Discovery of (R)-6-cyclopentyl-6-(2-(2,6-diethylpyridin-4-yl)ethyl)-3-((5,7-dimethyl-[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)methyl)-4-hydroxy-5,6-dihydropyran-2-one (PF-00868554) as a potent and orally available hepatitis C virus polymerase inhibitor.
J.Med.Chem., 52, 2009
3FXB
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Crystal structure of the ectoine-binding protein UehA
Descriptor: (4S)-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID, TRAP dicarboxylate transporter, DctP subunit
Authors:Lecher, J, Pittelkow, M, Bursy, J, Smits, S.H.J, Schmitt, L, Bremer, E.
Deposit date:2009-01-20
Release date:2009-05-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The crystal structure of UehA in complex with ectoine-A comparison with other TRAP-T binding proteins.
J.Mol.Biol., 389, 2009
1A1H
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QGSR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE)
Descriptor: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3'), QGSR ZINC FINGER PEPTIDE, ...
Authors:Elrod-Erickson, M, Benson, T.E, Pabo, C.O.
Deposit date:1997-12-10
Release date:1998-06-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition.
Structure, 6, 1998
3FZC
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OXA-24 beta-lactamase complex with SA3-53 inhibitor
Descriptor: (2S,3R)-4-(2-aminoethylcarbamoyloxy)-2-[(2-methanoylindolizin-3-yl)amino]-3-methyl-3-sulfino-butanoic acid, Beta-lactamase OXA-24, TETRAETHYLENE GLYCOL
Authors:Romero, A, Santillana, E.
Deposit date:2009-01-24
Release date:2010-02-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design, synthesis, and crystal structures of 6-alkylidene-2'-substituted penicillanic acid sulfones as potent inhibitors of Acinetobacter baumannii OXA-24 carbapenemase.
J.Am.Chem.Soc., 132, 2010
1A1R
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HCV NS3 PROTEASE DOMAIN:NS4A PEPTIDE COMPLEX
Descriptor: NS3 PROTEIN, NS4A PROTEIN, ZINC ION
Authors:Kim, J.L, Morgenstern, K.A, Lin, C, Fox, T, Dwyer, M.D, Landro, J.A, Chambers, S.P, Markland, W, Lepre, C.A, O'Malley, E.T, Harbeson, S.L, Rice, C.M, Murcko, M.A, Caron, P.R, Thomson, J.A.
Deposit date:1997-12-15
Release date:1998-06-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the hepatitis C virus NS3 protease domain complexed with a synthetic NS4A cofactor peptide.
Cell(Cambridge,Mass.), 87, 1996
6U4X
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BU of 6u4x by Molmil
Crystal structure of Equine Serum Albumin complex with ibuprofen
Descriptor: IBUPROFEN, SULFATE ION, Serum albumin, ...
Authors:Czub, M.P, Handing, K.B, Venkataramany, B.S, Steen, E.H, Shabalin, I.G, Satchell, K.J, Joachimiak, A, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2019-08-26
Release date:2019-09-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Albumin-Based Transport of Nonsteroidal Anti-Inflammatory Drugs in Mammalian Blood Plasma.
J.Med.Chem., 63, 2020
2Q20
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BU of 2q20 by Molmil
Structure of the germline Vk1 O18/O8 light chain variable domain homodimer
Descriptor: Vk1 O18/O8 germline light chain variable domain
Authors:Thompson, J.R, Ramirez-Alvarado, M, Baden, E.M.
Deposit date:2007-05-25
Release date:2008-04-08
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Altered dimer interface decreases stability in an amyloidogenic protein.
J.Biol.Chem., 283, 2008
7MRW
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Native RhopH complex of the malaria parasite Plasmodium falciparum
Descriptor: Cytoadherence linked asexual protein 3.1, High molecular weight rhoptry protein 2, High molecular weight rhoptry protein 3
Authors:Ho, C.M, Jih, J, Lai, M, Li, X.R, Goldberg, D.E, Beck, J.R, Zhou, Z.H.
Deposit date:2021-05-10
Release date:2021-09-15
Method:ELECTRON MICROSCOPY (3.72 Å)
Cite:Native structure of the RhopH complex, a key determinant of malaria parasite nutrient acquisition.
Proc.Natl.Acad.Sci.USA, 118, 2021
6U32
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Crystal structure of HaloTag bound to tetramethylrhodamine-HaloTag ligand
Descriptor: 9-[2-carboxy-5-({2-[2-(hexyloxy)ethoxy]ethyl}carbamoyl)phenyl]-6-(dimethylamino)-N,N-dimethyl-3H-xanthen-3-iminium, CHLORIDE ION, HaloTag
Authors:Berro, A.J, Schreiter, E.R.
Deposit date:2019-08-21
Release date:2020-09-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The HaloTag as a general scaffold for far-red tunable chemigenetic indicators.
Nat.Chem.Biol., 17, 2021
2PFS
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Crystal structure of universal stress protein from Nitrosomonas europaea
Descriptor: CHLORIDE ION, Universal stress protein
Authors:Chruszcz, M, Evdokimova, E, Cymborowski, M, Kagan, O, Savchenko, A, Edwards, A, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-04-05
Release date:2007-05-08
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural and functional insight into the universal stress protein family.
Evol Appl, 6, 2013
6U95
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BU of 6u95 by Molmil
Adeno-associated virus strain AAVhu.37 capsid icosahedral structure
Descriptor: Capsid protein VP1
Authors:Kaelber, J.T, Yost, S.A, Firlar, E, Mercer, A.C.
Deposit date:2019-09-06
Release date:2019-09-18
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Structure of the AAVhu.37 capsid by cryoelectron microscopy.
Acta Crystallogr.,Sect.F, 76, 2020
6UA3
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Human Mcl-1 in complex with a modified Bim BH3 peptide
Descriptor: Induced myeloid leukemia cell differentiation protein Mcl-1, modified Bim BH3 peptide
Authors:Mandal, T, Grant, R.A, Keating, A.E.
Deposit date:2019-09-10
Release date:2020-09-16
Method:X-RAY DIFFRACTION (1.552 Å)
Cite:Inhibitor peptides against Mcl-1 containing non-natural amino acids show potent apoptotic response.
To Be Published
3FR4
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BU of 3fr4 by Molmil
N-Benzyl-indolo carboxylic acids: Design and synthesis of potent and selective adipocyte Fatty-Acid Binding Protein (A-FABP) inhibitors
Descriptor: 9-[2-(trifluoromethyl)benzyl]-2,3,4,9-tetrahydro-1H-carbazole-8-carboxylic acid, Fatty acid-binding protein, adipocyte
Authors:Barf, T, Hammer, K, Lehmann, F, Haile, S, Axen, E, Medina, C, Uppenberg, J, Svensson, S, Rondahl, L, Lundb ck, T.
Deposit date:2009-01-08
Release date:2009-03-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:N-Benzyl-indolo carboxylic acids: Design and synthesis of potent and selective adipocyte fatty-acid binding protein (A-FABP) inhibitors.
Bioorg.Med.Chem.Lett., 19, 2009
2PZU
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BU of 2pzu by Molmil
Crystal structure of Staphylococcal nuclease variant V66N/P117G/H124L/S128A at cryogenic temperature
Descriptor: PHOSPHATE ION, Thermonuclease
Authors:Schlessman, J.L, Abe, C, Garcia-Moreno, E.B.
Deposit date:2007-05-18
Release date:2008-05-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallographic study of hydration of an internal cavity in engineered proteins with buried polar or ionizable groups.
Biophys.J., 94, 2008
2Q5G
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BU of 2q5g by Molmil
Ligand binding domain of PPAR delta receptor in complex with a partial agonist
Descriptor: Peroxisome proliferator-activated receptor delta, [(7-{[2-(3-MORPHOLIN-4-YLPROP-1-YN-1-YL)-6-{[4-(TRIFLUOROMETHYL)PHENYL]ETHYNYL}PYRIDIN-4-YL]THIO}-2,3-DIHYDRO-1H-INDEN- 4-YL)OXY]ACETIC ACID
Authors:Pettersson, I, Sauerberg, P, Johansson, E, Hoffman, I, Tari, L.W, Hunter, M.J, Nix, J.
Deposit date:2007-06-01
Release date:2008-06-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Design of a partial PPARdelta agonist.
Bioorg.Med.Chem.Lett., 17, 2007
1A1I
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BU of 1a1i by Molmil
RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE)
Descriptor: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3'), RADR ZIF268 ZINC FINGER PEPTIDE, ...
Authors:Elrod-Erickson, M, Benson, T.E, Pabo, C.O.
Deposit date:1997-12-10
Release date:1998-06-17
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition.
Structure, 6, 1998
1A1G
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DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE)
Descriptor: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3'), DSNR ZINC FINGER PEPTIDE, ...
Authors:Elrod-Erickson, M, Benson, T.E, Pabo, C.O.
Deposit date:1997-12-10
Release date:1998-06-10
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition.
Structure, 6, 1998
1A1K
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RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE)
Descriptor: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*TP*CP*CP*CP*AP*CP*GP*C)-3'), RADR ZIF268 VARIANT, ...
Authors:Elrod-Erickson, M, Benson, T.E, Pabo, C.O.
Deposit date:1997-12-10
Release date:1998-06-10
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition.
Structure, 6, 1998

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